TAML- and Buffer-Catalyzed Oxidation of Picric Acid by H2O2: Products, Kinetics, DFT, and the Mechanism of Dual Catalysis.

Studies of the oxidative degradation of picric acid (2,4,6-trinitrophenol) by H2O2 catalyzed by a fluorine-tailed tetraamido macrocyclic ligand (TAML) activator of peroxides [FeIII{4,5-Cl2C6H2-1,2-(NCOCMe2NCO)2CF2}(OH2)]- (2) in neutral and mildly basic solutions revealed that oxidative degradation of this explosive demands components of phosphate or carbonate buffers and is not oxidized in their absence. The TAML- and buffer-catalyzed oxidation is subject to severe substrate inhibition, which results in at least 1000-fold retardation of the interaction between the iron(III) resting state of 2 and H2O2. The inhibition accounts for a unique pH profile for the TAML catalysis with the highest activity at pH 7. Less aggressive TAMLs such as [FeIII{C6H4-1,2-(NCOCMe2NCO)2CMe2}(OH2)]- are catalytically inactive. The roles of buffer components in modulating catalysis have been clarified through detailed kinetic investigations of the degradation process, which is first order in the concentration of 2 and shows ascending hyperbolic dependencies in the concentrations of all three participants, i.e., H2O2, picrate, and phosphate/carbonate. The reactivity trends are consistent with a mechanism involving the formation of double ([LFeIII-Q]2-) and triple ([LFeIII-{Q-H2PO4}]3-) associates, which are unreactive and reactive toward H2O2, respectively. The binding of phosphate converts [LFeIII-Q]2- to the reactive triple associate. Density functional theory suggests that the stability of the double associate is achieved via both Fe-Ophenol binding and π-π stacking. The triple associate is an outer-sphere complex where phosphate binding occurs noncovalently through hydrogen bonds. A linear free energy relationship analysis of the reactivity of the mono-, di-, and trinitro phenols suggests that the rate-limiting step involves an electron transfer from phenolate to an oxidized ironoxo intermediate, giving phenoxy radicals that undergo further rapid oxidation that lead to eventual mineralization.

Analysis of Hydrogen Atom Abstraction from Ethylbenzene by an FeVO(TAML) Complex.

It was shown previously (Chem. Eur. J. 2015, 21, 1803) that the rate of hydrogen atom abstraction, k, from ethylbenzene (EB) by TAML complex [FeV(O)B*]- (1) in acetonitrile exhibits a large kinetic isotope effect (KIE ∼ 26) in the experimental range 233-243 K. The extrapolated tangents of ln(k/T) vs T-1 plots for EB-d10 and EB gave a large, negative intercept difference, Int(EB) - Int(EB-d10) = -34.5 J mol-1 K-1 for T-1 → 0, which is shown to be exclusively due to an isotopic mass effect on tunneling. A decomposition of the apparent activation barrier in terms of electronic, ZPE, thermal enthalpic, tunneling, and entropic contributions is presented. Tunneling corrections to ΔH⧧ and ΔS⧧ are estimated to be large. The DFT prediction, using functional B3LYP and basis set 6-311G, for the electronic contribution is significantly smaller than suggested by experiment. However, the agreement improves after correction for the basis set superposition error in the interaction between EB and 1. The kinetic model employed has been used to predict rate constants outside the experimental temperature range, which enabled us to compare the reactivity of 1 with those of other hydrogen abstracting complexes.

Activation parameters as mechanistic probes in the TAML iron(V)-oxo oxidations of hydrocarbons.

The results of low-temperature investigations of the oxidations of 9,10-dihydroanthracene, cumene, ethylbenzene, [D10]ethylbenzene, cyclooctane, and cyclohexane by an iron(V)-oxo TAML complex (2; see Figure 1) are presented, including product identification and determination of the second-order rate constants k2 in the range 233-243 K and the activation parameters (ΔH(≠) and ΔS(≠)). Statistically normalized k2 values (log k2') correlate linearly with the C-H bond dissociation energies DC-H, but ΔH(≠) does not. The point for 9,10-dihydroanthracene for the ΔH(≠) vs. DC-H correlation lies markedly off a common straight line of best fit for all other hydrocarbons, suggesting it proceeds via an alternate mechanism than the rate-limiting C-H bond homolysis promoted by 2. Contribution from an electron-transfer pathway may be substantial for 9,10-dihydroanthracene. Low-temperature kinetic measurements with ethylbenzene and [D10]ethylbenzene reveal a kinetic isotope effect of 26, indicating tunneling. The tunnel effect is drastically reduced at 0 °C and above, although it is an important feature of the reactivity of TAML activators at lower temperatures. The diiron(IV) µ-oxo dimer that is often a common component of the reaction medium involving 2 also oxidizes 9,10-dihydroanthracene, although its reactivity is three orders of magnitude lower than that of 2.

Efficient merging of copper and photoredox catalysis for the asymmetric cross-dehydrogenative-coupling of alkynes and tetrahydroisoquinolines.

A highly efficient catalytic asymmetric alkynylation of prochiral CH2 groups in tetrahydroisoquinoline was developed using copper catalyzed cross-dehydrogenative-coupling of sp(3) and sp C-H bonds with the assistance of a photocatalyst and visible light.

TAML activator/peroxide-catalyzed facile oxidative degradation of the persistent explosives trinitrotoluene and trinitrobenzene in micellar solutions.

TAML activators are well-known for their ability to activate hydrogen peroxide to oxidize persistent pollutants in water. The trinitroaromatic explosives, 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitrobenzene (TNB), are often encountered together as persistent, toxic pollutants. Here we show that an aggressive TAML activator with peroxides boosts the effectiveness of the known surfactant/base promoted breakdown of TNT and transforms the surfactant induced nondestructive binding of base to TNB into an extensive multistep degradation process. Treatment of basic cationic surfactant solutions of either TNT or TNB with TAML/peroxide (hydrogen peroxide and tert-butylhydroperoxide, TBHP) gave complete pollutant removal for both in <1 h with >75% of the nitrogen and ≥20% of the carbon converted to nitrite/nitrate and formate, respectively. For TNT, the TAML advantage is to advance the process toward mineralization. Basic surfactant solutions of TNB gave the colored solutions typical of known Meisenheimer complexes which did not progress to degradation products over many hours. However with added TAML activator, the color was bleached quickly and the TNB starting compound was degraded extensively toward minerals within an hour. A slower surfactant-free TAML activator/peroxide process also degrades TNT/TNB effectively. Thus, TAML/peroxide amplification effectively advances TNT and TNB water treatment giving reason to explore the environmental applicability of the approach.

Single-Cell Proteomics with Spatial Attributes: Tools and Techniques.

Now-a-days, the single-cell proteomics (SCP) concept is attracting interest, especially in clinical research, because it can identify the proteomic signature specific to diseased cells. This information is very essential when dealing with the progression of certain diseases, such as cancer, diabetes, Alzheimer's, etc. One of the major drawbacks of conventional destructive proteomics is that it gives an average idea about the protein expression profile in the disease condition. During the extraction of the protein from a biopsy or blood sample, proteins may come from both diseased cells and adjacent normal cells or any other cells from the disease environment. Again, SCP along with spatial attributes is utilized to learn about the heterogeneous function of a single protein. Before performing SCP, it is necessary to isolate single cells. This can be done by various techniques, including fluorescence-activated cell sorting (FACS), magnetic-activated cell sorting (MACS), laser capture microdissection (LCM), microfluidics, manual cell picking/micromanipulation, etc. Among the different approaches for proteomics, mass spectrometry-based proteomics tools are widely used for their high resolution as well as sensitivity. This Review mainly focuses on the mass spectrometry-based approaches for the study of single-cell proteomics.

Stability and bifurcation analysis of a heroin model with diffusion, delay and nonlinear incidence rate.

As we all know, the use of heroin and other drugs in Europe and more specifically in Ireland and the resulting prevalence are well documented. A huge population is still dying using heroin every day. This may happen due to, several reasons like, excessive use of painkiller, lack of awareness etc. It has also inspired mathematical modelers to develop dynamical systems predicting the use of heroin in long run. In this work, the effect of heroin in Europe has been discussed by constructing a suitable mathematical model. Our model describes the process of treatment for heroin users by consolidating a sensible utilitarian structure that speaking to the restricted accessibility of treatment. In the treatment time frame, because of the discretion of the medication clients, some kind of time delay called immunity delay might be found. The effect of immunity delay on the system's stability has been examined. The existence of positive solution and its boundedness has been established. Also, the local stability of the interior equilibrium point has been studied. Taking the immunity delay as the key parameter, the condition for Hopf-bifurcation has been studied. Using normal form theory and center manifold theorem, we have likewise talked about the direction and stability of delay induced Hopf-bifurcation. The corresponding reaction diffusion system with Dirichlet boundary condition has been considered and the Turing instability has been studied. Obtained solutions have also been plotted by choosing a suitable value of the parameters as the support of our obtained analytical results.

On the reactivity of mononuclear iron(V)oxo complexes.

Ferric tetraamido macrocyclic ligand (TAML)-based catalysts [Fe{C(6)H(4)-1,2-(NCOCMe(2)NCO)(2)CR(2)}(OH(2))]PPh(4) [1; R = Me (a), Et (b)] are oxidized by m-chloroperoxybenzoic acid at -40 °C in acetonitrile containing trace water in two steps to form Fe(V)oxo complexes (2a,b). These uniquely authenticated Fe(V)(O) species comproportionate with the Fe(III) starting materials 1a,b to give µ-oxo-(Fe(IV))(2) dimers. The comproportionation of 1a-2a is faster and that of 1b-2b is slower than the oxidation by 2a,b of sulfides (p-XC(6)H(4)SMe) to sulfoxides, highlighting a remarkable steric control of the dynamics. Sulfide oxidation follows saturation kinetics in [p-XC(6)H(4)SMe] with electron-rich substrates (X = Me, H), but changes to linear kinetics with electron-poor substrates (X = Cl, CN) as the sulfide affinity for iron decreases. As the sulfide becomes less basic, the Fe(IV)/Fe(III) ratio at the end of reaction for 2b suggests a decreasing contribution of concerted oxygen-atom transfer (Fe(V) → Fe(III)) concomitant with increasing electron transfer oxidation (Fe(V) → Fe(IV)). Fe(V) is more reactive toward PhSMe than Fe(IV) by 4 orders of magnitude, a gap even larger than that known for peroxidase Compounds I and II. The findings reinforce prior work typecasting TAML activators as faithful peroxidase mimics.

Revised Mechanism for a Ruthenium-Catalyzed Coupling of Aldehyde and Terminal Alkyne.

Ruthenium catalysts have been found to be of great use for many kinds of reactions. Understanding the details of the catalytic cycle allows to not only rationalize experimental results but also to improve upon reactions. Herein, we present a detailed computational study of a ruthenium-catalyzed coupling between a terminal alkyne and an aldehyde. The reaction under examination facilitates novel access to olefins with the concurrent loss of a single carbon as carbon monoxide. The reaction was first developed in 2009, but the tentative mechanism initially proposed was proven to be contradictory to some experimental data obtained since then. Using a combination of computational investigations and isotope-labeling experiments, several potential mechanisms have been studied. In contrast to the [2+2] cycloaddition mechanism suggested for similar catalysts, we propose a new consensus pathway that proceeds through the formation of a ruthenium-vinylidene complex that undergoes an aldol-type reaction with the aldehyde to yield the product olefins. Computational insights into the influence of different reagents used to optimize reaction conditions and the intricacies of decarbonylation of a Ru-CO complex affecting catalyst turnover are highlighted.

Zebrafish Assays as Developmental Toxicity Indicators in The Design of TAML Oxidation Catalysts.

TAML activators promise a novel water treatment approach by efficiently catalysing peroxide-based degradation of chemicals of high concern at environmental concentrations. Green design ethics demands an exploration of TAML toxicity. Exposure to high concentrations of certain activators caused adverse effects in zebrafish. At typical TAML operational concentrations, development was not perturbed.