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1.
Chemistry ; 30(9): e202303765, 2024 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-38088491

RESUMEN

A neutral silylyne complex with a Cr≡Si triple bond was prepared by dehydrogenation of a chromium silylene complex with Cr-H and Si-H bonds, and was isolated as monomeric crystals, unlike dimeric forms of its tungsten and molybdenum congeners. The strong Cr(δ-)-Si(δ+) bond polarity was revealed by the reaction with MeOH and DFT calculations. The chromium silylyne complex reacted with H2 under LED (365 nm) irradiation to reproduce the precursor silylene complex with a (H)Cr=Si(H) moiety, as a result of 1,2-H-H addition across the Cr≡Si triple bond. Similarly, the chromium silylyne complex reacted with benzene under irradiation to afford an 1,2-addition product with a (H)Cr=Si(Ph) moiety, via benzene C-H bond activation accompanied by Si-C bond forming.

2.
J Struct Biol ; 211(3): 107551, 2020 09 01.
Artículo en Inglés | MEDLINE | ID: mdl-32589927

RESUMEN

The interpretation of cell biological processes hinges on the elucidation of the underlying structures. Their three-dimensional analysis using electron tomography has extended our understanding of cellular organelles tremendously. The investigations depend on the availability of appropriate instruments for data recording. So far, such investigations have been done to a great extent on 300 keV transmission electron microscopes. Here we show the implementation of STEM tomography on a 200 kV FEG transmission electron microscope, including the tuning of the condenser for forming a beam with a small illumination aperture, dual-axis data recording, and evaluation of the maximum sample thickness and quality of the data. Our results show that the approach is accomplishable and promising, with high reliability, and reaching excellent data quality from plastic sections with a thickness of at least 900 nm.


Asunto(s)
Tomografía con Microscopio Electrónico/instrumentación , Tomografía con Microscopio Electrónico/métodos , Procesamiento de Imagen Asistido por Computador/métodos , Animales , Riñón/diagnóstico por imagen , Ratones , Programas Informáticos , Adhesión del Tejido
3.
Biosci Biotechnol Biochem ; 79(4): 640-2, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25560769

RESUMEN

The streptavidin/biotin interaction has been widely used as a useful tool in research fields. For application to a pre-targeting system, we previously developed a streptavidin mutant that binds to an iminobiotin analog while abolishing affinity for natural biocytin. Here, we design a bivalent iminobiotin analog that shows 1000-fold higher affinity than before, and determine its crystal structure complexed with the mutant protein.


Asunto(s)
Biotina/análogos & derivados , Estreptavidina/química , Biotina/síntesis química , Biotina/química , Cristalografía por Rayos X , Diseño de Fármacos , Modelos Moleculares , Mutación , Unión Proteica , Dominios y Motivos de Interacción de Proteínas
4.
J Phys Chem B ; 122(9): 2536-2543, 2018 03 08.
Artículo en Inglés | MEDLINE | ID: mdl-29420036

RESUMEN

Function/location of menaquinone (MQ) was studied in the photosynthetic reaction center of Heliobacterium (Hbt.) modesticaldum (hRC), which is one of the most primitive homodimeric type I RCs. The spin-polarized electron paramagnetic resonance signals of light-induced radical pair species, which are made of oxidized electron donor bacteriochlorophyll g (P800+) and reduced menaquinone (MQ-) or iron-sulfur cluster (FX-), were measured in the oriented membranes of Hbt. modesticaldum at cryogenic temperature. The spectral shape of transient electron spin-polarized signal of P800+FX- radical pair state varied little with respect to the direction of the external magnetic field. It suggested a dominant contribution of the spin evolution on the precursor primary radical pair P800+A0- state with the larger isotropic magnetic exchange interaction J than the anisotropic dipole interaction D. The pure P800+MQ- signal was simulated by subtracting the effects of spin evolution during the electron-transfer process. It was concluded that the J value of the P800+MQ- radical pair is negative with an amplitude almost comparable to | D|. It is in contrast to a positive and small J value of the P700+PhyQ- state in photosystem I (PS I). The results indicate similar but somewhat different locations/binding sites of quinones between hRC and PS I.


Asunto(s)
Bacterioclorofilas/química , Clostridiales/química , Luz , Complejo de Proteína del Fotosistema I/química , Vitamina K 2/química , Bacterioclorofilas/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Radicales Libres/química , Radicales Libres/metabolismo , Complejo de Proteína del Fotosistema I/metabolismo , Vitamina K 2/metabolismo
5.
J Phys Chem B ; 120(18): 4204-12, 2016 05 12.
Artículo en Inglés | MEDLINE | ID: mdl-27101081

RESUMEN

Orientations of the FA and FB iron-sulfur (FeS) clusters in a structure-unknown type-I homodimeric heriobacterial reaction center (hRC) were studied in oriented membranes of the thermophilic anaerobic photosynthetic bacterium Heliobacterium modesticaldum by electron paramagnetic resonance (EPR), and compared with those in heterodimeric photosystem I (PS I). The Rieske-type FeS center in the cytochrome b/c complex showed a well-oriented EPR signal. Illumination at 14 K induced an FB(-) signal with g-axes of gz = 2.066, gy = 1.937, and gx = 1.890, tilted at angles of 60°, 60°, and 45°, respectively, with respect to the membrane normal. Chemical reduction with dithionite produced an additional signal of FA(-), which magnetically interacted with FB(-), with gz = 2.046, gy = 1.942, and gx = 1.911 at 30°, 60°, and 90°, respectively. The angles and redox properties of FA(-) and FB(-) in hRC resemble those of FB(-) and FA(-), respectively, in PS I. Therefore, FA and FB in hRC, named after their g-value similarities, seem to be located like FB and FA, not like FA and FB, respectively, in PS I. The reducing side of hRC could resemble those in PS I, if the names of FA and FB are interchanged with each other.


Asunto(s)
Proteínas Bacterianas/química , Clostridiales/metabolismo , Proteínas Hierro-Azufre/química , Complejo de Proteína del Fotosistema I/química , Proteínas Bacterianas/metabolismo , Dimerización , Espectroscopía de Resonancia por Spin del Electrón , Proteínas Hierro-Azufre/metabolismo , Oxidación-Reducción , Complejo de Proteína del Fotosistema I/metabolismo
6.
J Phys Chem B ; 119(27): 8480-9, 2015 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-26075484

RESUMEN

The type I photosynthetic reaction center (RC) of heliobacteria (hRC) is a homodimer containing cofactors almost analogous to those in the plant photosystem I (PS I). However, its three-dimensional structure is not yet clear. PS I uses phylloquinone (PhyQ) as a secondary electron acceptor (A1), while the available evidence has suggested that menaquinone (MQ) in hRC has no function as A1. The present study identified a new transient electron spin-polarized electron paramagnetic resonance (ESP-EPR) signal, arising from the radical pair of the oxidized electron donor and the reduced electron acceptor (P800(+)MQ(-)), in the hRC core complex and membranes from Heliobacterium modesticaldum. The ESP signal could be detected at 5-20 K upon flash excitation only after prereduction of the iron-sulfur center, F(X), and was selectively lost by extraction of MQ with diethyl ether. MQ was suggested to be located closer to F(X) than PhyQ in PS I based on the simulation of the unique A/E (A, absorption; E, emission) ESP pattern, the reduction/oxidation rates of MQ, and the power saturation property of the static MQ(-) signal. The result revealed the quinone usage as the secondary electron acceptor in hRC, as in the case of PS I.


Asunto(s)
Proteínas Bacterianas/química , Electrones , Complejo de Proteína del Fotosistema I/química , Vitamina K 2/química , Membrana Celular/química , Clostridiales , Dimerización , Espectroscopía de Resonancia por Spin del Electrón , Éter/química , Oxidación-Reducción , Temperatura
7.
J Biochem ; 157(6): 467-75, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25645976

RESUMEN

For a multistep pre-targeting method using antibodies, a streptavidin mutant with low immunogenicity, termed low immunogenic streptavidin mutant No. 314 (LISA-314), was produced previously as a drug delivery tool. However, endogenous biotins (BTNs) with high affinity (Kd < 10(-10) M) for the binding pocket of LISA-314 prevents access of exogenous BTN-labelled anticancer drugs. In this study, we improve the binding pocket of LISA-314 to abolish its affinity for endogenous BTN species, therefore ensuring that the newly designed LISA-314 binds only artificial BTN analogue. The replacement of three amino acid residues was performed in two steps to develop a mutant termed V212, which selectively binds to 6-(5-((3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamido)hexanoic acid (iminobiotin long tail, IMNtail). Surface plasmon resonance results showed that V212 has a Kd value of 5.9 × 10(-7) M towards IMNtail, but no binding affinity for endogenous BTN species. This V212/IMNtail system will be useful as a novel delivery tool for anticancer therapy.


Asunto(s)
Biotina/metabolismo , Mutación , Estreptavidina/genética , Cristalografía por Rayos X , Modelos Moleculares , Conformación Proteica , Espectroscopía de Protones por Resonancia Magnética , Estreptavidina/química , Estreptavidina/metabolismo , Resonancia por Plasmón de Superficie
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