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1.
Proc Natl Acad Sci U S A ; 121(5): e2318522121, 2024 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-38261620

RESUMEN

Axonemal dynein motors drive ciliary motility and can consist of up to twenty distinct components with a combined mass of ~2 MDa. In mammals, failure of dyneins to assemble within the axonemal superstructure leads to primary ciliary dyskinesia. Syndromic phenotypes include infertility, rhinitis, severe bronchial conditions, and situs inversus. Nineteen specific cytosolic factors (Dynein Axonemal Assembly Factors; DNAAFs) are necessary for axonemal dynein assembly, although the detailed mechanisms involved remain very unclear. Here, we identify the essential assembly factor DNAAF3 as a structural ortholog of S-adenosylmethionine-dependent methyltransferases. We demonstrate that dynein heavy chains, especially those forming the ciliary outer arms, are methylated on key residues within various nucleotide-binding sites and on microtubule-binding domain helices directly involved in the transition to low binding affinity. These variable modifications, which are generally missing in a Chlamydomonas null mutant for the DNAAF3 ortholog PF22 (DAB1), likely impact on motor mechanochemistry fine-tuning the activities of individual dynein complexes.


Asunto(s)
Dineínas Axonemales , Metiltransferasas , Animales , Citosol , Citoesqueleto , Metilación , Mamíferos
2.
Proc Natl Acad Sci U S A ; 118(17)2021 04 27.
Artículo en Inglés | MEDLINE | ID: mdl-33875586

RESUMEN

Coordinated beating is crucial for the function of multiple cilia. However, the molecular mechanism is poorly understood. Here, we characterize a conserved ciliary protein CYB5D1 with a heme-binding domain and a cordon-bleu ubiquitin-like domain. Mutation or knockdown of Cyb5d1 in zebrafish impaired coordinated ciliary beating in the otic vesicle and olfactory epithelium. Similarly, the two flagella of an insertional mutant of the CYB5D1 ortholog in Chlamydomonas (Crcyb5d1) showed an uncoordinated pattern due to a defect in the cis-flagellum. Biochemical analyses revealed that CrCYB5D1 is a radial spoke stalk protein that binds heme only under oxidizing conditions. Lack of CrCYB5D1 resulted in a reductive shift in flagellar redox state and slowing down of the phototactic response. Treatment of Crcyb5d1 with oxidants restored coordinated flagellar beating. Taken together, these data suggest that CrCYB5D1 may integrate environmental and intraciliary signals and regulate the redox state of cilia, which is crucial for the coordinated beating of multiple cilia.


Asunto(s)
Cilios/metabolismo , Cilios/fisiología , Citocromos b5/metabolismo , Animales , Axonema/metabolismo , Chlamydomonas/metabolismo , Chlamydomonas/fisiología , Citocromos b5/fisiología , Dineínas/metabolismo , Flagelos/metabolismo , Flagelos/fisiología , Proteínas de Unión al Hemo/metabolismo , Proteínas de Unión al Hemo/fisiología , Microtúbulos/metabolismo , Mutación , Pez Cebra/metabolismo
3.
Zoolog Sci ; 37(1): 7-13, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-32068369

RESUMEN

The outer dynein arm-docking complex (ODA-DC), which was first identified in the green alga Chlamydomonas reinhardtii, is a protein complex that mediates the binding of axonemal dynein and doublet microtubules. To gain a better understanding of the evolutionary conservation and functional diversity of the ODA-DC, we knocked down a homolog of DC2, a major subunit of the ODA-DC, in the planarian Schmidtea mediterranea. Planaria are carnivorous flatworms that move by beating cilia on their ventral surface against a secreted mucus layer. These organisms have recently been used for cilia research because knockdown of flatworm genes by RNA interference (RNAi) is readily achieved through feeding with double-stranded RNA (dsRNA). Lack of DC2 in S. mediterranea caused several defects in cilia, including low beat frequency, decreased ciliary density, and a reduction in ciliary length. The loss of DC2 function C. reinhardtii mutant oda1 shows slow jerky swimming, but has two flagella of almost normal length. These data suggest that the function of a DC2 homolog in S. mediterranea cilia may be somewhat different from DC2 in C. reinhardtii flagella.


Asunto(s)
Dineínas Axonemales/metabolismo , Cilios/patología , Planarias/metabolismo , Secuencia de Aminoácidos , Animales , Dineínas Axonemales/genética , Cilios/genética , Cilios/metabolismo , Cilios/ultraestructura , Flagelos , Microscopía Electrónica de Transmisión , Movimiento , Planarias/genética , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , Interferencia de ARN
4.
Thorax ; 73(2): 157-166, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-28790179

RESUMEN

RATIONALE: Primary ciliary dyskinesia is a genetically heterogeneous inherited condition characterised by progressive lung disease arising from abnormal cilia function. Approximately half of patients have situs inversus. The estimated prevalence of primary ciliary dyskinesia in the UK South Asian population is 1:2265. Early, accurate diagnosis is key to implementing appropriate management but clinical diagnostic tests can be equivocal. OBJECTIVES: To determine the importance of genetic screening for primary ciliary dyskinesia in a UK South Asian population with a typical clinical phenotype, where standard testing is inconclusive. METHODS: Next-generation sequencing was used to screen 86 South Asian patients who had a clinical history consistent with primary ciliary dyskinesia. The effect of a CCDC103 p.His154Pro missense variant compared with other dynein arm-associated gene mutations on diagnostic/phenotypic variability was tested. CCDC103 p.His154Pro variant pathogenicity was assessed by oligomerisation assay. RESULTS: Sixteen of 86 (19%) patients carried a homozygous CCDC103 p.His154Pro mutation which was found to disrupt protein oligomerisation. Variable diagnostic test results were obtained including normal nasal nitric oxide levels, normal ciliary beat pattern and frequency and a spectrum of partial and normal dynein arm retention. Fifteen (94%) patients or their sibling(s) had situs inversus suggesting CCDC103 p.His154Pro patients without situs inversus are missed. CONCLUSIONS: The CCDC103 p.His154Pro mutation is more prevalent than previously thought in the South Asian community and causes primary ciliary dyskinesia that can be difficult to diagnose using pathology-based clinical tests. Genetic testing is critical when there is a strong clinical phenotype with inconclusive standard diagnostic tests.


Asunto(s)
Pueblo Asiatico/genética , Síndrome de Kartagener/etnología , Síndrome de Kartagener/genética , Proteínas Asociadas a Microtúbulos/genética , Mutación/genética , Adolescente , Adulto , Niño , Preescolar , Estudios de Cohortes , Femenino , Humanos , Masculino , Pakistán/etnología , Reino Unido , Adulto Joven
5.
J Biol Chem ; 290(12): 7388-401, 2015 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-25572396

RESUMEN

CCDC103 is an ∼29-kDa protein consisting of a central RPAP3_C domain flanked by N- and C-terminal coiled coils. Defects in CCDC103 lead to primary ciliary dyskinesia caused by the loss of outer dynein arms. This protein is present along the entire length of the ciliary axoneme and does not require other dynein or docking complex components for its integration. Unlike other known dynein assembly factors within the axoneme, CCDC103 is not solubilized by 0.6 M NaCl and requires more chaotropic conditions, such as 0.5 M KI. Alternatively, it can be extracted using 0.3% sarkosyl. CCDC103 forms stable dimers and other oligomers in solution through interactions involving the central domain. The smallest particle observed by dynamic light scattering has a hydrodynamic diameter of ∼25 nm. Furthermore, CCDC103 binds microtubules directly, forming ∼9-nm diameter particles that exhibit a 12-nm spacing on the microtubule lattice, suggesting that there may be two CCDC103 units per outer arm dynein repeat. Although the outer dynein arm docking complex is necessary to form arrays of dyneins along microtubules, it is not sufficient to set up a single array in a precise location on each axonemal doublet. We propose that CCDC103 helps generate a high-affinity site on the doublets for outer arm assembly, either through direct interactions or indirectly, perhaps by modifying the underlying microtubule lattice.


Asunto(s)
Axonema/metabolismo , Dineínas/metabolismo , Proteínas Asociadas a Microtúbulos/metabolismo , Microtúbulos/metabolismo , Secuencia de Aminoácidos , Animales , Caenorhabditis elegans/metabolismo , Electroforesis en Gel de Poliacrilamida , Técnica del Anticuerpo Fluorescente , Humanos , Proteínas Asociadas a Microtúbulos/química , Datos de Secuencia Molecular , Unión Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido
6.
Am J Hum Genet ; 93(4): 672-86, 2013 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-24094744

RESUMEN

Primary ciliary dyskinesia (PCD) is caused when defects of motile cilia lead to chronic airway infections, male infertility, and situs abnormalities. Multiple causative PCD mutations account for only 65% of cases, suggesting that many genes essential for cilia function remain to be discovered. By using zebrafish morpholino knockdown of PCD candidate genes as an in vivo screening platform, we identified c21orf59, ccdc65, and c15orf26 as critical for cilia motility. c21orf59 and c15orf26 knockdown in zebrafish and planaria blocked outer dynein arm assembly, and ccdc65 knockdown altered cilia beat pattern. Biochemical analysis in Chlamydomonas revealed that the C21orf59 ortholog FBB18 is a flagellar matrix protein that accumulates specifically when cilia motility is impaired. The Chlamydomonas ida6 mutant identifies CCDC65/FAP250 as an essential component of the nexin-dynein regulatory complex. Analysis of 295 individuals with PCD identified recessive truncating mutations of C21orf59 in four families and CCDC65 in two families. Similar to findings in zebrafish and planaria, mutations in C21orf59 caused loss of both outer and inner dynein arm components. Our results characterize two genes associated with PCD-causing mutations and elucidate two distinct mechanisms critical for motile cilia function: dynein arm assembly for C21orf59 and assembly of the nexin-dynein regulatory complex for CCDC65.


Asunto(s)
Trastornos de la Motilidad Ciliar/genética , Glicoproteínas/genética , Síndrome de Kartagener/genética , Pez Cebra/genética , Animales , Chlamydomonas/genética , Cilios/genética , Análisis Mutacional de ADN/métodos , Dineínas/genética , Femenino , Humanos , Masculino , Mutación , Sistemas de Lectura Abierta , Planarias/genética , Proteoma/genética
7.
Mol Biol Cell ; 35(7): ar89, 2024 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-38696262

RESUMEN

Cilia are highly complex motile, sensory, and secretory organelles that contain perhaps 1000 or more distinct protein components, many of which are subject to various posttranslational modifications such as phosphorylation, N-terminal acetylation, and proteolytic processing. Another common modification is the addition of one or more methyl groups to the side chains of arginine and lysine residues. These tunable additions delocalize the side-chain charge, decrease hydrogen bond capacity, and increase both bulk and hydrophobicity. Methylation is usually mediated by S-adenosylmethionine (SAM)-dependent methyltransferases and reversed by demethylases. Previous studies have identified several ciliary proteins that are subject to methylation including axonemal dynein heavy chains that are modified by a cytosolic methyltransferase. Here, we have performed an extensive proteomic analysis of multiple independently derived cilia samples to assess the potential for SAM metabolism and the extent of methylation in these organelles. We find that cilia contain all the enzymes needed for generation of the SAM methyl donor and recycling of the S-adenosylhomocysteine and tetrahydrofolate byproducts. In addition, we find that at least 155 distinct ciliary proteins are methylated, in some cases at multiple sites. These data provide a comprehensive resource for studying the consequences of methyl marks on ciliary biology.


Asunto(s)
Cilios , Procesamiento Proteico-Postraduccional , Proteómica , S-Adenosilmetionina , Cilios/metabolismo , S-Adenosilmetionina/metabolismo , Metilación , Proteómica/métodos , Animales , Humanos , Metiltransferasas/metabolismo , S-Adenosilhomocisteína/metabolismo , Epigenoma
8.
J Biol Chem ; 287(5): 3108-22, 2012 Jan 27.
Artículo en Inglés | MEDLINE | ID: mdl-22157010

RESUMEN

Dynein light chain 1 (LC1/DNAL1) is one of the most highly conserved components of ciliary axonemal outer arm dyneins, and it associates with both a heavy chain motor unit and tubulin located within the A-tubule of the axonemal outer doublet microtubules. In a variety of model systems, lack of LC1 or expression of mutant forms leads to profound defects in ciliary motility, including the failure of the hydrodynamic coupling needed for ciliary metachronal synchrony, random stalling during the power/recovery stroke transition, an aberrant response to imposed viscous load, and in some cases partial failure of motor assembly. These phenotypes have led to the proposal that LC1 acts as part of a mechanical switch to control motor function in response to alterations in axonemal curvature. Here we have used NMR chemical shift mapping to define the regions perturbed by a series of mutations in the C-terminal domain that yield a range of phenotypic effects on motility. In addition, we have identified the subdomain of LC1 involved in binding microtubules and characterized the consequences of an Asn → Ser alteration within the terminal leucine-rich repeat that in humans causes primary ciliary dyskinesia. Together, these data define a series of functional subdomains within LC1 and allow us to propose a structural model for the organization of the dynein heavy chain-LC1-microtubule ternary complex that is required for the coordinated activity of dynein motors in cilia.


Asunto(s)
Proteínas Asociadas a Microtúbulos/química , Modelos Moleculares , Sustitución de Aminoácidos , Axonema/química , Axonema/genética , Axonema/metabolismo , Chlamydomonas/química , Chlamydomonas/genética , Chlamydomonas/metabolismo , Cilios/química , Cilios/genética , Cilios/metabolismo , Humanos , Proteínas Asociadas a Microtúbulos/genética , Proteínas Asociadas a Microtúbulos/metabolismo , Mutación Missense , Resonancia Magnética Nuclear Biomolecular , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína
9.
Cytoskeleton (Hoboken) ; 77(1-2): 25-35, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31858719

RESUMEN

CCDC103 is a small protein with unusual biophysical properties that is required for outer dynein arm assembly on ciliary axonemes. Mutations in both human and zebrafish CCDC103 proteins lead to primary ciliary dyskinesia. Previous studies revealed that this protein can oligomerize and appears to be arrayed along the entire length of the ciliary axoneme. CCDC103 also binds purified microtubules directly and indeed stabilizes them. Here we use biochemical approaches to identify two regions of CCDC103 that mediate self-interaction. In both cases, these associations are stable to heating in the presence of detergent and are not disrupted by strong reducing agents. One interaction region consists of a 27-residue inherently disorder segment that can mediate heat/detergent-resistant dimerization when attached to unrelated monomeric proteins. The second interface includes the C-terminal RPAP3_C alpha helical domain. Our data suggest that CCDC103 can form an unconventional polymer and we propose models for how the monomers might be organized. We also use molecular modeling of the RPAP3_C domain to determine the structural consequences of the pathogenic H154P mutation found in human PCD patients.


Asunto(s)
Axonema/metabolismo , Cilios/metabolismo , Dineínas/metabolismo , Flagelos/metabolismo , Proteínas Asociadas a Microtúbulos/metabolismo , Humanos , Proteínas Asociadas a Microtúbulos/genética , Modelos Moleculares , Mutación , Estructura Secundaria de Proteína , Andamios del Tejido
10.
Mol Biol Cell ; 30(15): 1834-1845, 2019 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-31116681

RESUMEN

WDR92 associates with a prefoldin-like cochaperone complex and known dynein assembly factors. WDR92 has been very highly conserved and has a phylogenetic signature consistent with it playing a role in motile ciliary assembly or activity. Knockdown of WDR92 expression in planaria resulted in ciliary loss, reduced beat frequency and dyskinetic motion of the remaining ventral cilia. We have now identified a Chlamydomonas wdr92 mutant that encodes a protein missing the last four WD repeats. The wdr92-1 mutant builds only ∼0.7-µm cilia lacking both inner and outer dynein arms, but with intact doublet microtubules and central pair. When cytoplasmic extracts prepared by freeze/thaw from a control strain were fractionated by gel filtration, outer arm dynein components were present in several distinct high molecular weight complexes. In contrast, wdr92-1 extracts almost completely lacked all three outer arm heavy chains, while the IFT dynein heavy chain was present in normal amounts. A wdr92-1 tpg1-2 double mutant builds ∼7-µm immotile flaccid cilia that completely lack dynein arms. These data indicate that WDR92 is a key assembly factor specifically required for the stability of axonemal dynein heavy chains in cytoplasm and suggest that cytoplasmic/IFT dynein heavy chains use a distinct folding pathway.


Asunto(s)
Proteínas Algáceas/metabolismo , Axonema/metabolismo , Chlamydomonas/metabolismo , Dineínas/metabolismo , Repeticiones WD40 , Proteínas Algáceas/química , Secuencia de Aminoácidos , Axonema/ultraestructura , Secuencia de Bases , Chlamydomonas/ultraestructura , Cilios/metabolismo , Cilios/ultraestructura , Ritmo Circadiano , Ácido Glutámico/metabolismo , Modelos Biológicos , Mutación/genética , Estabilidad Proteica
11.
Mol Biol Cell ; 16(12): 5661-74, 2005 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-16195342

RESUMEN

Tctex1 and Tctex2 were originally described as potential distorters/sterility factors in the non-Mendelian transmission of t-haplotypes in mice. These proteins have since been identified as subunits of cytoplasmic and/or axonemal dyneins. Within the Chlamydomonas flagellum, Tctex1 is a subunit of inner arm I1. We have now identified a second Tctex1-related protein (here termed LC9) in Chlamydomonas. LC9 copurifies with outer arm dynein in sucrose density gradients and is missing only in those strains completely lacking this motor. Zero-length cross-linking of purified outer arm dynein indicates that LC9 interacts directly with both the IC1 and IC2 intermediate chains. Immunoblot analysis revealed that LC2, LC6, and LC9 are missing in an IC2 mutant strain (oda6-r88) that can assemble outer arms but exhibits significantly reduced flagellar beat frequency. This defect is unlikely to be due to lack of LC6, because an LC6 null mutant (oda13) exhibits only a minor swimming abnormality. Using an LC2 null mutant (oda12-1), we find that although some outer arm dynein components assemble in the absence of LC2, they are nonfunctional. In contrast, dyneins from oda6-r88, which also lack LC2, retain some activity. Furthermore, we observed a synthetic assembly defect in an oda6-r88 oda12-1 double mutant. These data suggest that LC2, LC6, and LC9 have different roles in outer arm assembly and are required for wild-type motor function in the Chlamydomonas flagellum.


Asunto(s)
Proteínas Portadoras/fisiología , Chlamydomonas reinhardtii/fisiología , Proteínas de Drosophila/fisiología , Dineínas/fisiología , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Sitios de Unión , Proteínas Portadoras/química , Proteínas Portadoras/genética , Chlamydomonas reinhardtii/efectos de los fármacos , Proteínas de Drosophila/química , Proteínas de Drosophila/genética , Etildimetilaminopropil Carbodiimida/farmacología , Humanos , Ratones , Datos de Secuencia Molecular , Alineación de Secuencia , Homología de Secuencia de Aminoácido
12.
Mol Biol Cell ; 15(8): 3891-902, 2004 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-15194815

RESUMEN

The radial spokes are required for Ca(2+)-initiated intraflagellar signaling, resulting in modulation of inner and outer arm dynein activity. However, the mechanochemical properties of this signaling pathway remain unknown. Here, we describe a novel nucleoside diphosphate kinase (NDK) from the Chlamydomonas flagellum. This protein (termed p61 or RSP23) consists of an N-terminal catalytic NDK domain followed by a repetitive region that includes three IQ motifs and a highly acidic C-terminal segment. We find that p61 is missing in axonemes derived from the mutants pf14 (lacks radial spokes) and pf24 (lacks the spoke head and several stalk components) but not in those from pf17 (lacking only the spoke head). The p61 protein can be extracted from oda1 (lacks outer dynein arms) and pf17 axonemes with 0.5 M KI, and copurifies with radial spokes in sucrose density gradients. Furthermore, p61 contains two classes of calmodulin binding site: IQ1 interacts with calmodulin-Sepharose beads in a Ca(2+)-independent manner, whereas IQ2 and IQ3 show Ca(2+)-sensitive associations. Wild-type axonemes exhibit two distinct NDKase activities, at least one of which is stimulated by Ca(2+). This Ca(2+)-responsive enzyme, which accounts for approximately 45% of total axonemal NDKase, is missing from pf14 axonemes. We found that purified radial spokes also exhibit NDKase activity. Thus, we conclude that p61 is an integral component of the radial spoke stalk that binds calmodulin and exhibits Ca(2+)-controlled NDKase activity. These observations suggest that nucleotides other than ATP may play an important role in the signal transduction pathway that underlies the regulatory mechanism defined by the radial spokes.


Asunto(s)
Calcio/metabolismo , Chlamydomonas/enzimología , Flagelos/enzimología , Nucleósido-Difosfato Quinasa/análisis , Nucleósido-Difosfato Quinasa/química , Proteínas Protozoarias/análisis , Proteínas Protozoarias/química , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Calmodulina/metabolismo , Chlamydomonas/genética , Flagelos/fisiología , Guanosina Trifosfato/metabolismo , Datos de Secuencia Molecular , Nucleósido-Difosfato Quinasa/metabolismo , Filogenia , Proteínas de Plantas , Estructura Terciaria de Proteína , Proteínas Protozoarias/aislamiento & purificación , Proteínas Protozoarias/metabolismo , Transducción de Señal
13.
Mol Biol Cell ; 15(10): 4633-46, 2004 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-15304520

RESUMEN

Members of the LC7/Roadblock family of light chains (LCs) have been found in both cytoplasmic and axonemal dyneins. LC7a was originally identified within Chlamydomonas outer arm dynein and associates with this motor's cargo-binding region. We describe here a novel member of this protein family, termed LC7b that is also present in the Chlamydomonas flagellum. Levels of LC7b are reduced approximately 20% in axonemes isolated from strains lacking inner arm I1 and are approximately 80% lower in the absence of the outer arms. When both dyneins are missing, LC7b levels are diminished to <10%. In oda9 axonemal extracts that completely lack outer arms, LC7b copurifies with inner arm I1, whereas in ida1 extracts that are devoid of I1 inner arms it associates with outer arm dynein. We also have observed that some LC7a is present in both isolated axonemes and purified 18S dynein from oda1, suggesting that it is also a component of both the outer arm and inner arm I1. Intriguingly, in axonemal extracts from the LC7a null mutant, oda15, which assembles approximately 30% of its outer arms, LC7b fails to copurify with either dynein, suggesting that it interacts with LC7a. Furthermore, both the outer arm gamma heavy chain and DC2 from the outer arm docking complex completely dissociate after salt extraction from oda15 axonemes. EDC cross-linking of purified dynein revealed that LC7b interacts with LC3, an outer dynein arm thioredoxin; DC2, an outer arm docking complex component; and also with the phosphoprotein IC138 from inner arm I1. These data suggest that LC7a stabilizes both the outer arms and inner arm I1 and that both LC7a and LC7b are involved in multiple intradynein interactions within both dyneins.


Asunto(s)
Proteínas Portadoras/metabolismo , Chlamydomonas reinhardtii/metabolismo , Dineínas/metabolismo , Proteínas Motoras Moleculares/metabolismo , Proteínas Protozoarias/metabolismo , Secuencia de Aminoácidos , Animales , Proteínas Portadoras/clasificación , Proteínas Portadoras/genética , Chlamydomonas reinhardtii/citología , Dineínas/química , Dineínas/genética , Flagelos/metabolismo , Flagelos/ultraestructura , Humanos , Proteínas Motoras Moleculares/genética , Datos de Secuencia Molecular , Filogenia , Proteínas de Plantas , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Protozoarias/clasificación , Proteínas Protozoarias/genética , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo
14.
Elife ; 62017 05 17.
Artículo en Inglés | MEDLINE | ID: mdl-28513435

RESUMEN

The pathways controlling cilium biogenesis in different cell types have not been fully elucidated. We recently identified peptidylglycine α-amidating monooxygenase (PAM), an enzyme required for generating amidated bioactive signaling peptides, in Chlamydomonas and mammalian cilia. Here, we show that PAM is required for the normal assembly of motile and primary cilia in Chlamydomonas, planaria and mice. Chlamydomonas PAM knockdown lines failed to assemble cilia beyond the transition zone, had abnormal Golgi architecture and altered levels of cilia assembly components. Decreased PAM gene expression reduced motile ciliary density on the ventral surface of planaria and resulted in the appearance of cytosolic axonemes lacking a ciliary membrane. The architecture of primary cilia on neuroepithelial cells in Pam-/- mouse embryos was also aberrant. Our data suggest that PAM activity and alterations in post-Golgi trafficking contribute to the observed ciliogenesis defects and provide an unanticipated, highly conserved link between PAM, amidation and ciliary assembly.


Asunto(s)
Chlamydomonas/enzimología , Cilios/metabolismo , Oxigenasas de Función Mixta/metabolismo , Complejos Multienzimáticos/metabolismo , Biogénesis de Organelos , Animales , Técnicas de Silenciamiento del Gen , Ratones/embriología , Ratones Noqueados , Oxigenasas de Función Mixta/genética , Complejos Multienzimáticos/genética , Planarias/enzimología
15.
Mol Biol Cell ; 27(8): 1204-9, 2016 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-26912790

RESUMEN

WDR92 is a highly conserved WD-repeat protein that has been proposed to be involved in apoptosis and also to be part of a prefoldin-like cochaperone complex. We found that WDR92 has a phylogenetic signature that is generally compatible with it playing a role in the assembly or function of specifically motile cilia. To test this hypothesis, we performed an RNAi-based knockdown of WDR92 gene expression in the planarianSchmidtea mediterraneaand were able to achieve a robust reduction in mRNA expression to levels undetectable under our standard RT-PCR conditions. We found that this treatment resulted in a dramatic reduction in the rate of organismal movement that was caused by a switch in the mode of locomotion from smooth, cilia-driven gliding to muscle-based, peristaltic contractions. Although the knockdown animals still assembled cilia of normal length and in similar numbers to controls, these structures had reduced beat frequency and did not maintain hydrodynamic coupling. By transmission electron microscopy we observed that many cilia had pleiomorphic defects in their architecture, including partial loss of dynein arms, incomplete closure of the B-tubule, and occlusion or replacement of the central pair complex by accumulated electron-dense material. These observations suggest that WDR92 is part of a previously unrecognized cytoplasmic chaperone system that is specifically required to fold key components necessary to build motile ciliary axonemes.


Asunto(s)
Proteínas del Helminto/química , Proteínas del Helminto/metabolismo , Planarias/citología , Animales , Axonema/metabolismo , Cilios/genética , Cilios/metabolismo , Cilios/ultraestructura , Técnicas de Silenciamiento del Gen , Proteínas del Helminto/genética , Microscopía Electrónica de Transmisión , Chaperonas Moleculares/metabolismo , Complejos Multiproteicos/metabolismo , Filogenia , Planarias/genética , Planarias/metabolismo , Interferencia de ARN
16.
Methods Mol Biol ; 1454: 245-54, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27514927

RESUMEN

Planarian flatworms are carnivorous invertebrates with astounding regenerative properties. They have a ventral surface on which thousands of motile cilia are exposed to the extracellular environment. These beat in a synchronized manner against secreted mucus thereby propelling the animal forward. Similar to the nematode Caenorhabditis elegans, the planarian Schmidtea mediterranea is easy to maintain in the laboratory and is highly amenable to simple RNAi approaches through feeding with dsRNA. The methods are simple and robust, and the level of gene expression reduction that can be obtained is, in many cases, almost total. Moreover, cilia assembly and function is not essential for viability in this organism, as animals readily survive for weeks even with the apparent total absence of this organelle. Both genome and expressed sequence tag databases are available and allow design of vectors to target any desired gene of choice. Combined, these feature make planaria a useful model system in which to examine ciliary assembly and motility, especially in the context of a ciliated epithelium where many organelles beat in a hydrodynamically coupled synchronized manner. In addition, as planaria secrete mucus against which the cilia beat to generate propulsive force, this system may also prove useful for analysis of mucociliary interactions. In this chapter, we provide simple methods to maintain a planarian colony, knockdown gene expression by RNAi, and analyze the resulting animals for whole organism motility as well as ciliary architecture and function.


Asunto(s)
Cilios/fisiología , Locomoción , Planarias/fisiología , Animales , Cilios/ultraestructura , Técnicas de Silenciamiento del Gen , Microscopía , Microscopía Electrónica , Planarias/ultraestructura , Interferencia de ARN
17.
Mol Biol Cell ; 24(17): 2668-77, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23864713

RESUMEN

Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163 [FAP163]) as being closely related to the D1bIC(FAP133) intermediate chain (IC) of the dynein that powers this movement. Biochemical analysis revealed that FAP163 is present in the flagellar matrix and is actively trafficked by IFT. Furthermore, FAP163 copurified with D1bIC(FAP133) and the LC8 dynein light chain, indicating that it is an integral component of the retrograde IFT dynein. To assess the functional role of FAP163, we generated an RNA interference knockdown of the orthologous protein (WD60) in planaria. The Smed-wd60(RNAi) animals had a severe ciliary assembly defect that dramatically compromised whole-organism motility. Most cilia were present as short stubs that had accumulated large quantities of IFT particle-like material between the doublet microtubules and the membrane. The few remaining approximately full-length cilia had a chaotic beat with a frequency reduced from 24 to ∼10 Hz. Thus WD60/FAP163 is a dynein IC that is absolutely required for retrograde IFT and ciliary assembly.


Asunto(s)
Chlamydomonas reinhardtii/metabolismo , Cilios/metabolismo , Dineínas/metabolismo , Flagelos/metabolismo , Planarias/genética , Planarias/metabolismo , Animales , Transporte Biológico , Chlamydomonas reinhardtii/genética , Cilios/genética , ADN de Plantas , Dineínas/genética , Dineínas/aislamiento & purificación , Proteínas Motoras Moleculares/genética , Proteínas Motoras Moleculares/aislamiento & purificación , Proteínas Motoras Moleculares/metabolismo , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Transporte de Proteínas , Alineación de Secuencia
18.
Mol Biol Cell ; 23(18): 3554-65, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22855525

RESUMEN

The cytoplasmic dynein regulatory factor Lis1, which induces a persistent tight binding to microtubules and allows for transport of cargoes under high-load conditions, is also present in motile cilia/flagella. We observed that Lis1 levels in flagella of Chlamydomonas strains that exhibit defective motility due to mutation of various axonemal substructures were greatly enhanced compared with wild type; this increase was absolutely dependent on the presence within the flagellum of the outer arm dynein α heavy chain/light chain 5 thioredoxin unit. To assess whether cells might interpret defective motility as a "high-load environment," we reduced the flagellar beat frequency of wild-type cells through enhanced viscous load and by reductive stress; both treatments resulted in increased levels of flagellar Lis1, which altered the intrinsic beat frequency of the trans flagellum. Differential extraction of Lis1 from wild-type and mutant axonemes suggests that the affinity of outer arm dynein for Lis1 is directly modulated. In cytoplasm, Lis1 localized to two punctate structures, one of which was located near the base of the flagella. These data reveal that the cell actively monitors motility and dynamically modulates flagellar levels of the dynein regulatory factor Lis1 in response to imposed alterations in beat parameters.


Asunto(s)
Proteínas Algáceas/metabolismo , Chlamydomonas reinhardtii/metabolismo , Dineínas/metabolismo , Flagelos/metabolismo , Proteínas Algáceas/genética , Axonema/genética , Axonema/metabolismo , Axonema/fisiología , Chlamydomonas reinhardtii/genética , Chlamydomonas reinhardtii/fisiología , Flagelos/fisiología , Immunoblotting , Microscopía Fluorescente , Movimiento/fisiología , Mutación
19.
Mol Biol Cell ; 21(21): 3669-79, 2010 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-20844081

RESUMEN

Motile cilia mediate the flow of mucus and other fluids across the surface of specialized epithelia in metazoans. Efficient clearance of peri-ciliary fluids depends on the precise coordination of ciliary beating to produce metachronal waves. The role of individual dynein motors and the mechanical feedback mechanisms required for this process are not well understood. Here we used the ciliated epithelium of the planarian Schmidtea mediterranea to dissect the role of outer arm dynein motors in the metachronal synchrony of motile cilia. We demonstrate that animals that completely lack outer dynein arms display a significant decline in beat frequency and an inability of cilia to coordinate their oscillations and form metachronal waves. Furthermore, lack of a key mechanosensitive regulatory component (LC1) yields a similar phenotype even though outer arms still assemble in the axoneme. The lack of metachrony was not due simply to a decrease in ciliary beat frequency, as reducing this parameter by altering medium viscosity did not affect ciliary coordination. In addition, we did not observe a significant temporal variability in the beat cycle of impaired cilia. We propose that this conformational switch provides a mechanical feedback system within outer arm dynein that is necessary to entrain metachronal synchrony.


Asunto(s)
Dineínas/fisiología , Planarias/fisiología , Animales , Señalización del Calcio , Cilios/enzimología , Cilios/fisiología , Cilios/ultraestructura , Dineínas/deficiencia , Epitelio/fisiología , Locomoción/fisiología , Mecanorreceptores/fisiología , Modelos Animales , Planarias/citología , Planarias/genética , Planarias/ultraestructura , Conformación Proteica
20.
J Cell Biol ; 186(2): 283-95, 2009 Jul 27.
Artículo en Inglés | MEDLINE | ID: mdl-19620633

RESUMEN

A system distinct from the central pair-radial spoke complex was proposed to control outer arm dynein function in response to alterations in the mechanical state of the flagellum. In this study, we examine the role of a Chlamydomonas reinhardtii outer arm dynein light chain that associates with the motor domain of the gamma heavy chain (HC). We demonstrate that expression of mutant forms of LC1 yield dominant-negative effects on swimming velocity, as the flagella continually beat out of phase and stall near or at the power/recovery stroke switchpoint. Furthermore, we observed that LC1 interacts directly with tubulin in a nucleotide-independent manner and tethers this motor unit to the A-tubule of the outer doublet microtubules within the axoneme. Therefore, this dynein HC is attached to the same microtubule by two sites: via both the N-terminal region and the motor domain. We propose that this gamma HC-LC1-microtubule ternary complex functions as a conformational switch to control outer arm activity.


Asunto(s)
Proteínas Portadoras/metabolismo , Movimiento Celular/fisiología , Chlamydomonas reinhardtii , Proteínas de Drosophila/metabolismo , Flagelos , Proteínas Protozoarias/metabolismo , Animales , Proteínas Portadoras/química , Proteínas Portadoras/genética , Chlamydomonas reinhardtii/citología , Chlamydomonas reinhardtii/fisiología , Proteínas de Drosophila/química , Proteínas de Drosophila/genética , Dineínas , Flagelos/metabolismo , Flagelos/ultraestructura , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Fenotipo , Estructura Terciaria de Proteína , Proteínas Protozoarias/química , Proteínas Protozoarias/genética , Tubulina (Proteína)/metabolismo
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