The role of plants in the formation of species-specific features in grass flies (Diptera, Chloropidae, Meromyza).

In the current manuscript, we present the results of comparative analysis of seven species of Meromyza flies in the "variegata" cluster and of the evolutionary close species M.inornata, based the following criteria: 1) 14 external key features; 2) shape and area of the anterior processes of postgonites; 3) mtDNA CO1 region and 4) host plant diversity data. We could demonstrate the primary role of host plants in species formation inside genus Meromyza and calculated the timing of the divergence of M.inornata and the species of "variegata" cluster. Based on our estimates of evolution rate for mtDNA CO1 gene, we could conclude that that divergence of herbs happened before the speciation of grass flies Meromyza. Meromyza species, close to the ancestral species of the cluster, are adapted to the wide range of host plants. We revealed the most informative variables h1, S and Plant analysing data with the following statistical methods: linear discriminant analysis - LDA, regularised discriminant analysis - RDA, flexible discriminant analysis - FDA and probabilistic neural network - PNN. The highest classification accuracy was achieved using PNN (99%) and the lowest when using LDA (95.8%). When the Plant trait was excluded, the classification accuracy decreased by 14%. We revealed the significant trends in size change of the anterior process of the postgonite amongst studies species. This morphological structure is an element of male reproductive apparatus critical for the restriction of interspecies mating. We determined three branches of speciation in the "variegata" cluster and five trends in the evolution of this cluster, based on the external morphological features. We showed that M.variegata and especially M.mosquensis, the species closest to the ancestral haplotype, have the largest number of features typical of those of M.inornata. Based on the external features and the area of the anterior process of the postgonite, we reconstructed the phylogenetic position of M.elbergi in the cluster. In accordance with the obtained outcomes, we could conclude that the distribution, species diversity and the adaptation of the grass flies to narrow oligophagy were directly connected to host plant diversity. The adaptation to different host plants could be the main factor in divergence of grass flies and their evolution started later than the diversification in the Pooideae subfamily of grasses.

Aggregated occurrence records of the invasive alien striped field mouse (Apodemus agrarius Pall.) in the former USSR.

BACKGROUND: Open access to occurrence records of the most dangerous invasive species in a standardised format have important potential applications for ecological research and management, including the assessment of invasion risks, formulation of preventative and management plans in the context of global climate and land use changes in the short and long perspective. The striped field mouse (Apodemus agrarius Pallas, 1771) is a common species in the temperate latitudes of the Palaearctic. Due to land use and global climate changes, several waves of expansion of the range of this species have been observed or inferred. By intrusion into new regions, the striped field mouse has become an alien species there. Apodemus agrarius causes significant harm to agriculture and is one of the most important pests of grain crops. In tree nurseries, A. agrarius destroys seeds of valuable tree species and gnaws at the bark of saplings of broadleaf species and berry bushes. It is one of the most epidemiologically important rodents, involved in the circulation of the causative agents of haemorrhagic fever with renal syndrome (HFRS) and many other zoonotic infections. The foregoing allows us to classify the striped field mouse as a dangerous invasive alien species in the expanding part of the range. A lot of data accumulated for this species are of interest from both ecological and applied points of view. The accumulation and aggregation of data on the occurrence records of A. agrarius is relevant for the study of ecology, biogeography and construction of the spatial distribution and ecological niche models in the context of global climate change. We have created a dataset of 1603 occurrence records of this species, collected from 1936 to December 2020 by various zoologists, previously published or original. These records relate to a significant part of the striped field mouse's range in Russia (1264 records) and neighbouring countries (339 records). The dataset shows the position of the northern and central parts of A. agrarius range, the disjunction of the range in Transbaikalia and isolated populations in the north of the range. The data were obtained in different formats from literature, indicating different degrees of accuracy of geographic coordinates and with several variations of the species' name. In the process of aggregating and fixing errors, we created a set of georeferenced occurrence records, adopted a controlled vocabulary, removed duplicates and standardised the format of records using unified data structure. We examined the dataset for inconsistencies with the taxonomic position of A. agrarius and removed the incorrect records. This paper presents the resulting dataset of A. agrarius occurrence records in the territory of Russia and neighbouring countries in a standardised format. NEW INFORMATION: This is a validated and comprehensive dataset of occurrence records of A. agrarius, including both our own observations and records from literature. This dataset is available for extension by other researchers using a standard format in accordance with Darwin Core standards. In different countries, there are a lot of occurrence records for the striped field mouse, but the overwhelming part of them is presented in separate literary sources, stored in the form of maps and in zoological collections. Prior to this project, such information was not available to a wide range of researchers and did not allow the use of these spatial data for further processing by modern methods of analysis, based on geographic information systems (GIS technologies). The created dataset combines species occurrence records of many Soviet zoologists who studied the distribution of the striped field mouse over a significant part of its recent range, in Russia and neighbouring countries (within the former USSR). The final set of records was created by combining the species occurrence records using a uniform data structure, checking geographic coordinates and removing duplicate and erroneous records. The dataset expands the available information on the spatial and temporal distribution of the dangerous invasive species in Russia and neighbouring countries of the former USSR (Estonia, Latvia, Lithuania, Belarus, Ukraine, Moldova, Georgia, Azerbaijan, Kazakhstan and Kyrgyzstan).

New records and geographic distribution of the sympatric zones of unisexual and bisexual rock lizards of the genus Darevskia in Armenia and adjacent territories.

BACKGROUND: Caucasian rock lizards of the genus Darevskia are unique taxa, including both bisexual and parthenogenetic species. The parthenogenetic species have originated as a result of natural hybridisation between females and males of different bisexual species. The species involved in interspecific hybridisation are called parental. However, sympatric zones (SZ) of unisexual and bisexual rock lizards of the Caucasus are still poorly studied, although they are very important for understanding the role of hybrid individuals of different origin in reticulate evolution. This paper presents the location of the SZs of parthenogenetic and their parental bisexual rock lizards of the genus Darevskia in Armenia and adjacent territories of Georgia and Nagorno-Karabakh. We summarised the locations of the SZs identified from 1957 to the present, based on our field survey data gathered in 2018-2019 and records from publications and museum collections. This dataset includes 39 SZs of three types: SZ of parental bisexual species, SZ of parental species with unisexual species and SZ of the parthenogenetic species. For each zone, species composition, geographical and altitudinal distribution are presented. New records expand our knowledge of the geographical and altitudinal distribution of SZs in these species and provide additional data for understanding the mechanisms of reticulate evolution and hybridogeneous speciation in the past, present and future. NEW INFORMATION: The new records, including geographical and altitudinal distributions of three types of SZs, are presented, which expand the previously-known list to 39 locations of contact zones for parthenogenetic and its bisexual parental species of rock lizards of the genus Darevskia in Armenia and the adjacent territories of Georgia and Nagorno-Karabakh.

The Ecology and Evolutionary Dynamics of Meiotic Drive.

Meiotic drivers are genetic variants that selfishly manipulate the production of gametes to increase their own rate of transmission, often to the detriment of the rest of the genome and the individual that carries them. This genomic conflict potentially occurs whenever a diploid organism produces a haploid stage, and can have profound evolutionary impacts on gametogenesis, fertility, individual behaviour, mating system, population survival, and reproductive isolation. Multiple research teams are developing artificial drive systems for pest control, utilising the transmission advantage of drive to alter or exterminate target species. Here, we review current knowledge of how natural drive systems function, how drivers spread through natural populations, and the factors that limit their invasion.

Clonal diversity and clone formation in the parthenogenetic Caucasian rock lizard Darevskia dahlia.

The all-female Caucasian rock lizard species Darevskia dahli and other parthenogenetic species of this genus reproduce normally via true parthenogenesis. Previously, the genetic diversity of this species was analyzed using allozymes, mitochondrial DNA, and DNA fingerprint markers. In the present study, variation at three microsatellite loci was studied in 111 specimens of D. dahli from five populations from Armenia, and new information regarding clonal diversity and clone formation in D. dahli was obtained that suggests a multiple hybridization origin. All individuals but one were heterozygous at the loci studied. Based on specific allele combinations, 11 genotypes were identified among the individuals studied. Individuals with the same genotypes formed distinct clonal lineages: one major clone was represented by 72 individuals, an intermediate clone was represented by 21 individuals, and nine other clones were rare and represented by one or several individuals. A new approach based on the detection and comparison of genotype-specific markers formed by combinations of parental-specific markers was developed and used to identify at least three hybridization founder events that resulted in the initial formation of one major and two rare clones. All other clones, including the intermediate and seven rare clones, probably arose through postformation microsatellite mutations of the major clone. This approach can be used to identify hybridization founder events and to study clone formation in other unisexual taxa.

Clonal diversity and clone formation in the parthenogenetic Caucasian rock Lizard Darevskia dahli [corrected].

The all-female Caucasian rock lizard species Darevskia dahli and other parthenogenetic species of this genus reproduce normally via true parthenogenesis. Previously, the genetic diversity of this species was analyzed using allozymes, mitochondrial DNA, and DNA fingerprint markers. In the present study, variation at three microsatellite loci was studied in 111 specimens of D. dahli from five populations from Armenia, and new information regarding clonal diversity and clone formation in D. dahli was obtained that suggests a multiple hybridization origin. All individuals but one were heterozygous at the loci studied. Based on specific allele combinations, 11 genotypes were identified among the individuals studied. Individuals with the same genotypes formed distinct clonal lineages: one major clone was represented by 72 individuals, an intermediate clone was represented by 21 individuals, and nine other clones were rare and represented by one or several individuals. A new approach based on the detection and comparison of genotype-specific markers formed by combinations of parental-specific markers was developed and used to identify at least three hybridization founder events that resulted in the initial formation of one major and two rare clones. All other clones, including the intermediate and seven rare clones, probably arose through postformation microsatellite mutations of the major clone. This approach can be used to identify hybridization founder events and to study clone formation in other unisexual taxa.

Genomic variation in parthenogenetic lizard Darevskia armeniaca: evidence from DNA fingerprinting data.

Microsatellites, or short tandem repeats, are abundant across genomes of most organisms. It is evident that the most straightforward and conclusive way of studying mutations in microsatellite-containing loci is to use clonally transmitted genomes or DNA sequences inherited in multigeneration pedigrees. At present, little is known about the origin of genetic variation in species that lack effective genetic recombination. DNA fingerprinting in 43 families of the parthenogenetic lizard species Darevskia armeniaca (131 siblings), using (GACA)(4), (GGCA)(4), (GATA)(4), and (CAC)(5) probes, revealed mutant fingerprints in siblings that differed from their mothers in several restriction DNA fragments. In some cases, the mutant fingerprints detected in siblings were also found in population samples. The mutation rate for new restriction fragment length estimated by using multilocus probes varied from 0.8 x 10(-2) to 4.9 x 10(-2) per band/per sibling. Probably, the most variations detected as restriction fragment length polymorphism have germ-line origin, but somatic changes of (CAC)(n) fingerprints in adult lizards were also observed. These results provide new evidence of existing unstable regions in genomes of parthenogenetic vertebrate animals, which provide genetic variation in unisexual populations.