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1.
Arch Microbiol ; 206(9): 371, 2024 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-39122975

RESUMEN

Bacterial growing resistance to antibiotics poses a critical threat to global health. This study investigates, for the first time, the antibiofilm properties of Vicia ervilia agglutinin (VEA) from six different V. ervilia accessions against pathogenic bacteria, and the yeast Candida albicans. In the absence of antimicrobial properties, purified VEA significantly inhibited biofilm formation, both in Gram-positive and Gram-negative bacteria, but not in C. albicans. With an inhibitory concentration ranging from 100 to 500 µg/ml, the VEA antibiofilm activity was more relevant against the Gram-positive bacteria Streptococcus aureus and Staphylococcus epidermidis, whose biofilm was reduced up to 50% by VEA purified from accessions #5 and #36. VEA antibiofilm variability between accessions was observed, likely due to co-purified small molecules rather than differences in VEA protein sequences. In conclusion, VEA seed extracts from the accessions with the highest antibiofilm activity could represent a valid approach for the development of an effective antibiofilm agent.


Asunto(s)
Antibacterianos , Biopelículas , Candida albicans , Bacterias Gramnegativas , Bacterias Grampositivas , Pruebas de Sensibilidad Microbiana , Biopelículas/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Bacterias Gramnegativas/efectos de los fármacos , Candida albicans/efectos de los fármacos , Candida albicans/fisiología , Antibacterianos/farmacología , Lectinas de Plantas/farmacología , Extractos Vegetales/farmacología , Extractos Vegetales/química , Semillas/química
2.
Nature ; 464(7291): 1033-8, 2010 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-20348908

RESUMEN

The Périgord black truffle (Tuber melanosporum Vittad.) and the Piedmont white truffle dominate today's truffle market. The hypogeous fruiting body of T. melanosporum is a gastronomic delicacy produced by an ectomycorrhizal symbiont endemic to calcareous soils in southern Europe. The worldwide demand for this truffle has fuelled intense efforts at cultivation. Identification of processes that condition and trigger fruit body and symbiosis formation, ultimately leading to efficient crop production, will be facilitated by a thorough analysis of truffle genomic traits. In the ectomycorrhizal Laccaria bicolor, the expansion of gene families may have acted as a 'symbiosis toolbox'. This feature may however reflect evolution of this particular taxon and not a general trait shared by all ectomycorrhizal species. To get a better understanding of the biology and evolution of the ectomycorrhizal symbiosis, we report here the sequence of the haploid genome of T. melanosporum, which at approximately 125 megabases is the largest and most complex fungal genome sequenced so far. This expansion results from a proliferation of transposable elements accounting for approximately 58% of the genome. In contrast, this genome only contains approximately 7,500 protein-coding genes with very rare multigene families. It lacks large sets of carbohydrate cleaving enzymes, but a few of them involved in degradation of plant cell walls are induced in symbiotic tissues. The latter feature and the upregulation of genes encoding for lipases and multicopper oxidases suggest that T. melanosporum degrades its host cell walls during colonization. Symbiosis induces an increased expression of carbohydrate and amino acid transporters in both L. bicolor and T. melanosporum, but the comparison of genomic traits in the two ectomycorrhizal fungi showed that genetic predispositions for symbiosis-'the symbiosis toolbox'-evolved along different ways in ascomycetes and basidiomycetes.


Asunto(s)
Ascomicetos/genética , Evolución Molecular , Genoma Fúngico/genética , Simbiosis/genética , Carbohidratos , Elementos Transponibles de ADN/genética , Cuerpos Fructíferos de los Hongos/metabolismo , Genes Fúngicos/genética , Genómica , Haploidia , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Azufre/metabolismo
3.
Mycorrhiza ; 26(6): 515-27, 2016 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-26968742

RESUMEN

Truffles are the fruiting structures of ascomycetes in the genus Tuber. Because of their economic importance, truffles have been cultivated for many years using artificially inoculated host plants. Nevertheless, the life cycle and reproductive mode of Tuber spp. are still poorly understood. In filamentous ascomycetes, sexual reproduction is genetically controlled by the mating-type (MAT) locus. Among Tuber spp., the MAT locus has been recently characterized in the black truffles Tuber melanosporum and Tuber indicum. Here, by using sequence information derived from these species and from a Tuber borchii expressed sequence tag (EST) showing similarity to the mat1 gene of Alternaria brassicicola, we embarked on a chromosome-walking procedure to sequence the complete MAT region of T. borchii. This fungus produces highly commercialized whitish truffles and represents a model species for addressing basic questions concerning the life cycle of Tuber spp. We show that T. borchii is heterothallic, as its MAT locus is organized into two idiomorphs, each harbored by different mycelial strains. The alignment of the MAT locus from black truffles and T. borchii reveals that extensive sequence rearrangements and inversions occurred between these species. Moreover, by coupling mating-type analyses to karyological observation, we show that mycelia isolated from ascocarps and mycorrhizae are formed by homokaryotic hyphae.


Asunto(s)
Ascomicetos/fisiología , Proteínas Fúngicas/metabolismo , Secuencia de Aminoácidos , Ascomicetos/genética , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Reproducción , Especificidad de la Especie
4.
Mycorrhiza ; 24 Suppl 1: S19-27, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24384788

RESUMEN

Major breakthroughs in our understanding of the life cycles of the symbiotic ascomycetes belonging to the genus Tuber have occurred over the last several years. A number of Tuber species produce edible fruiting bodies, known as truffles, that are marketed worldwide. A better understanding of the basic biological characteristics of Tuber spp. is likely to have tremendous practical relevance for their cultivation. Tuber melanosporum produces the most valuable black truffles and its genome has been recently sequenced. This species is now serving as a model for studying the biology of truffles. Here, we review recent progress in the understanding of sexual reproduction modalities in T. melanosporum. The practical relevance of these findings is outlined. In particular, the discoveries that T. melanosporum is heterothallic and that strains of different mating types compete to persist on the roots of host plants suggest that the spatial and temporal distributional patterns of strains of different mating types are key determinants of truffle fructification. The spatial segregation of the two mating types in areas where T. melanosporum occurs likely limits truffle production. Thus, host plant inoculation techniques and agronomic practices that might be pursued to manage T. melanosporum orchards with a balanced presence of the two mating partners are described.


Asunto(s)
Ascomicetos/fisiología , Micorrizas/fisiología , Agricultura , Ascomicetos/genética , Ascomicetos/crecimiento & desarrollo , Cuerpos Fructíferos de los Hongos/crecimiento & desarrollo , Cuerpos Fructíferos de los Hongos/fisiología , Micorrizas/genética , Micorrizas/crecimiento & desarrollo , Reproducción/genética , Microbiología del Suelo
5.
Nanotheranostics ; 8(3): 298-311, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38577321

RESUMEN

Exosomes are nanosized extracellular vesicles secreted by all cell types, including canine adipose-derived stem cells (cADSCs). By mediating intercellular communication, exosomes modulate the biology of adjacent and distant cells by transferring their cargo. In the present work after isolation and characterization of exosomes derived from canine adipose tissue, we treated the same canine donors affected by hepatopathies with the previously isolated exosomes. We hypothesize that cADSC-sourced miRNAs are among the factors responsible for a regenerative and anti-inflammatory effect in the treatment of hepatopathies in dogs, providing the clinical veterinary field with an effective and innovative cell-free therapy. Exosomes were isolated and characterized for size, distribution, surface markers, and for their miRNomic cargo by microRNA sequencing. 295 dogs affected with hepatopathies were treated and followed up for 6 months to keep track of their biochemical marker levels. Results confirmed that exosomes derived from cADSCs exhibited an average diameter of 91 nm, and positivity to 8 known exosome markers. The administration of exosomes to dogs affected by liver-associated inflammatory pathologies resulted in the recovery of the animal alongside the normalization of biochemical parameters of kidney function. In conclusion, cADSCs-derived exosomes are a promising therapeutic tool for treating inflammatory disorders in animal companions.


Asunto(s)
Exosomas , Vesículas Extracelulares , MicroARNs , Perros , Animales , MicroARNs/genética , Exosomas/genética , Exosomas/metabolismo , Vesículas Extracelulares/metabolismo , Hepatitis Crónica/metabolismo , Células Madre/metabolismo
6.
Curr Biol ; 34(9): 1967-1976.e6, 2024 05 06.
Artículo en Inglés | MEDLINE | ID: mdl-38626763

RESUMEN

In flowering plants, outcrossing is commonly ensured by self-incompatibility (SI) systems. These can be homomorphic (typically with many different allelic specificities) or can accompany flower heteromorphism (mostly with just two specificities and corresponding floral types). The SI system of the Oleaceae family is unusual, with the long-term maintenance of only two specificities but often without flower morphology differences. To elucidate the genomic architecture and molecular basis of this SI system, we obtained chromosome-scale genome assemblies of Phillyrea angustifolia individuals and related them to a genetic map. The S-locus region proved to have a segregating 543-kb indel unique to one specificity, suggesting a hemizygous region, as observed in all distylous systems so far studied at the genomic level. Only one of the predicted genes in this indel region is found in the olive tree, Olea europaea, genome, also within a segregating indel. We describe complete association between the presence/absence of this gene and the SI types determined for individuals of seven distantly related Oleaceae species. This gene is predicted to be involved in catabolism of the gibberellic acid (GA) hormone, and experimental manipulation of GA levels in developing buds modified the male and female SI responses of the two specificities in different ways. Our results provide a unique example of a homomorphic SI system, where a single conserved gibberellin-related gene in a hemizygous indel underlies the long-term maintenance of two groups of reproductive compatibility.


Asunto(s)
Giberelinas , Giberelinas/metabolismo , Oleaceae/genética , Oleaceae/metabolismo , Oleaceae/crecimiento & desarrollo , Autoincompatibilidad en las Plantas con Flores/genética , Genoma de Planta , Flores/genética , Flores/crecimiento & desarrollo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
7.
New Phytol ; 199(1): 176-187, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23574460

RESUMEN

The genetic structure of ectomycorrhizal (ECM) fungal populations results from both vegetative and sexual propagation. In this study, we have analysed the spatial genetic structure of Tuber melanosporum populations, a heterothallic ascomycete that produces edible fruit bodies. Ectomycorrhizas from oaks and hazels from two orchards were mapped and genotyped using simple sequence repeat markers and the mating type locus. The distribution of the two T. melanosporum mating types was also monitored in the soil. In one orchard, the genetic profiles of the ascocarps were compared with those of the underlying mycorrhizas. A pronounced spatial genetic structure was found. The maximum genet sizes were 2.35 and 4.70 m in the two orchards, with most manifesting a size < 1 m. Few genets persisted throughout two seasons. A nonrandom distribution pattern of the T. melanosporum was observed, resulting in field patches colonized by genets that shared the same mating types. Our findings suggest that competition occurs between genets and provide basic information on T. melanosporum propagation patterns that are relevant for the management of productive truffle orchards.


Asunto(s)
Ascomicetos/genética , Repeticiones de Microsatélite , Variación Genética , Genética de Población , Italia , Micorrizas/genética , Plantas Comestibles/genética , Quercus/microbiología , Reproducción Asexuada/genética , Microbiología del Suelo
8.
Int J Med Mushrooms ; 25(6): 1-20, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37522529

RESUMEN

Pleurotus spp. have been gaining popularity as a source for the creation of functional foods, nutraceuticals and novel pharmaceuticals. Despite Pleurotus is a specious genus including 208 legitimate species, only a few of them such as P. ostreatus are commercially accessible. The genetic and metabolic diversity of Pleurotus both at specific and subspecific level is therefore of main concern for many researchers. In addition to the conventional morphological approach, molecular and biochemical markers have been greatly contributing to investigate these issues. In this study, samples from six Pleurotus species (P. eryngii is represented by three varieties) were molecularly identified and the phylogeny was inferred to assess the relationships between the various taxa. Strains in pure culture obtained from 6 out of 7 species were cultivated as mycelium in vitro to investigate the metabolites by untargeted LC-MS/MS-based metabolomics. The results pointed out species-specific metabolite patterns and highlighted a clear difference between the P. eryngii group and P. ostreatus, although the latter appears more versatile depending on the strain. This is the first study pointing out and comparing different metabolite patterns in Italian samples of Pleurotus species, including P. eryngii varieties.

9.
New Phytol ; 189(3): 723-735, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-20964691

RESUMEN

• In light of the recent finding that Tuber melanosporum, the ectomycorrhizal ascomycete that produces the most highly prized black truffles, is a heterothallic species, we monitored the spatial distribution of strains with opposite mating types (MAT) in a natural truffle ground and followed strain dynamics in artificially inoculated host plants grown under controlled conditions. • In a natural truffle ground, ectomycorrhizas (ECMs), soil samples and fruit bodies were sampled and genotyped to determine mating types. Simple sequence repeat (SSR) markers were also used to fingerprint ECMs and fruit bodies. The ECMs from nursery-inoculated host plants were analysed for mating type at 6 months and 19 months post-inoculation. • In open-field conditions, all ECMs from the same sampling site showed an identical mating type and an identical haploid genotype, based on SSR analysis. Interestingly, the gleba of fruit bodies always demonstrated the same genotype as the surrounding ECMs. Although root tips from nursery-grown plants initially developed ECMs of both mating types, a dominance of ECMs of the same MAT were found after several months. • The present study deepens our understanding of the vegetative and sexual propagation modes of T. melanosporum. These results are highly relevant for truffle cultivation.


Asunto(s)
Ascomicetos/genética , Genes del Tipo Sexual de los Hongos , Variación Genética , Genoma Fúngico , Genotipo , Micorrizas/genética , Betulaceae/microbiología , Biodiversidad , Cuerpos Fructíferos de los Hongos , Haploidia , Quercus/microbiología , Secuencias Repetitivas de Ácidos Nucleicos , Microbiología del Suelo
10.
New Phytol ; 189(3): 710-722, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-20961294

RESUMEN

• The genome of Tuber melanosporum has recently been sequenced. Here, we used this information to identify genes involved in the reproductive processes of this edible fungus. The sequenced strain (Mel28) possesses only one of the two master genes required for mating, that is, the gene that codes for the high mobility group (HMG) transcription factor (MAT1-2-1), whereas it lacks the gene that codes for the protein containing the α-box- domain (MAT1-1-1), suggesting that this fungus is heterothallic. • A PCR-based approach was initially employed to screen truffles for the presence of the MAT1-2-1 gene and amplify the conserved regions flanking the mating type (MAT) locus. The MAT1-1-1 gene was finally identified using primers designed from the conserved regions of strains that lack the MAT1-2-1 gene. • Mating type-specific primer pairs were developed to screen asci and gleba from truffles of different origins and to genotype single ascospores within the asci. These analyses provided definitive evidence that T. melanosporum is a heterothallic species with a MAT locus that is organized similarly to those of ancient fungal lineages. • A greater understanding of the reproductive mechanisms that exist in Tuber spp. allows for optimization of truffle plantation management strategies.


Asunto(s)
Ascomicetos/genética , Genes Fúngicos , Genes del Tipo Sexual de los Hongos , Cartilla de ADN , Reproducción/genética , Simbiosis/genética
11.
J Exp Bot ; 62(3): 1189-200, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21041370

RESUMEN

Proanthocyanidins (PAs) are agronomically important biopolymers in higher plants composed primarily of catechin and epicatechin units. The biosynthesis of these natural products is regulated by transcription factors including proteins of the R2R3MYB class. To gain insight into the genetic control of the catechin and epicatechin branches of the PA pathway in forage legumes, here the effects of the expression of FaMYB1, a flavonoid R2R3MYB repressor from strawberry, in Lotus corniculatus (birdsfoot trefoil), were tested. It was found that in leaves of T(0) transgenic lines the degree of PA inhibition correlated with the level of FaMYB1 expression. These effects were heritable in the transgene-positive plant T(1) generation and were tissue specific as the suppression of proanthocyanidin biosynthesis was most pronounced in mesophyll cells within the leaf, whereas other flavonoid and phenolic compounds were substantially unaltered. The data suggest that FaMYB1 may counter-balance the activity of the endogenous transcriptional MYB-bHLH-WD40 (MBW) complex promoting proanthocyanidin biosynthesis via the catechin and epicatechin branches and that FaMYB1 does not interfere with the expression levels of a resident R2R3MYB activator of PAs. It is proposed that in forage legumes leaf cell commitment to synthesize proanthocyanidins relies on the balance between the activity of activator and repressor MYBs operating within the MBW complex.


Asunto(s)
Regulación hacia Abajo , Fragaria/genética , Lotus/metabolismo , Hojas de la Planta/metabolismo , Proteínas de Plantas/metabolismo , Proantocianidinas/biosíntesis , Factores de Transcripción/metabolismo , Expresión Génica , Regulación de la Expresión Génica de las Plantas , Lotus/genética , Hojas de la Planta/genética , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/metabolismo , Factores de Transcripción/genética
12.
Mycoses ; 54(5): e364-76, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20633233

RESUMEN

Twenty-eight clinical fungal isolates were characterised by morphological (macro- and micro-features and growth response at 25, 30 and 37°C) and molecular (nuclear rDNA-internal transcriber spacer, calmodulin, cytochrome c oxidase 1 and the largest subunit of RNA polymerase II) analyses. The clinical fungal isolates were ascribed to the following taxa: Penicillium chrysogenum, Verticillium sp., Aspergillus tubingensis, Aspergillus minutus, Beauveria bassiana and Microsporum gypseum. In addition, in vitro susceptibility testing of the isolates to conventional antifungal agents and to two chemically well-defined chemotypes of Thymus schimperi essential oil was performed. Most of the isolates were resistant to amphotericin B (except A. minutus), and itraconazole, while terbinafine was quite active on these fungi. T. schimperi essential oil showed antifungal activity against all of the tested fungal isolates with minimal inhibitory concentration values similar or lower than those of terbinafine. Transmission electron microscopy analyses revealed that fungal growth inhibition by essential oil was accompanied by marked morphological and cytological changes.


Asunto(s)
Antifúngicos/farmacología , Hongos/clasificación , Hongos/efectos de los fármacos , Micosis/microbiología , Aceites Volátiles/farmacología , Thymus (Planta)/química , Anfotericina B/farmacología , Antifúngicos/aislamiento & purificación , ADN de Hongos/genética , ADN Espaciador Ribosómico , Farmacorresistencia Fúngica , Proteínas Fúngicas/genética , Hongos/citología , Hongos/aislamiento & purificación , Humanos , Itraconazol/farmacología , Pruebas de Sensibilidad Microbiana , Microscopía Electrónica de Transmisión , Datos de Secuencia Molecular , Naftalenos/farmacología , Aceites Volátiles/aislamiento & purificación , Análisis de Secuencia de ADN , Terbinafina
13.
Mycorrhiza ; 21(1): 17-25, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20349093

RESUMEN

Belowground ectomycorrhizal communities are often species rich. Characterization of the ectomycorrhizas (ECMs) underneath native truffle areas and/or cultivation sites is particularly relevant to identifying fungal species that might interfere with or promote truffle propagation and fruiting. Fungal identification at the genus/species level can now be achieved by combining detailed morphological and anatomical descriptions with molecular approaches. In a survey of the mycorrhizal biodiversity of Tuber melanosporum orchards and inoculated host plants in nurseries, we repeatedly sampled ECMs with morphological features resembling those of the ECMs widely known as the AD type. Despite the fact that the AD type is regarded as one of the most competitive fungal species towards Tuber spp., its taxonomical rank has yet to be resolved. By analyzing the 28S and internal transcribed spacer (ITS) rDNA regions, here, we show that AD-type ECMs result from host plant colonization by the pyronemataceous species Trichophaea woolhopeia. Further to this, the 28S and ITS phylogenetic trees built from the AD-type ECMs analyzed sustain the hypothesis that T. woolhopeia is a species complex.


Asunto(s)
Ascomicetos/clasificación , Ascomicetos/crecimiento & desarrollo , Biodiversidad , Micorrizas/clasificación , Micorrizas/crecimiento & desarrollo , Análisis por Conglomerados , ADN de Hongos/química , ADN de Hongos/genética , ADN Ribosómico/química , ADN Ribosómico/genética , ADN Espaciador Ribosómico/química , ADN Espaciador Ribosómico/genética , Genes de ARNr , Datos de Secuencia Molecular , Micorrizas/genética , Filogenia , ARN de Hongos/genética , ARN Ribosómico 28S/genética , Análisis de Secuencia de ADN
14.
Plant Sci ; 304: 110794, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33568295

RESUMEN

In order to investigate the intraspecific diversity of wild Humulus lupulus (hop) in Central Italy, 12 populations were evaluated for their genetic polymorphism by means of 13 SSR loci together with six commercial cultivars as a reference. High levels of polymorphism were found across the populations, being 140 the number of multilocus genotypes over 159 samples analyzed. Moreover, the observed heterozygosity was higher than expected in most of the populations. High levels of gene flow were thus envisaged to occur within and among wild populations, and our sampling strategy allowed us to gain insights on the propagation modes of this species, i.e. clonal versus sexual propagation. Nevertheless, a genetic structure of populations with at least five genetically different clusters was disclosed. Private alleles were observed in both wild and cultivated hops. Chemical analysis of bittering and aromatic quality of female flowers from a subset of 8 wild populations revealed a high variability among plants, especially for essential oil components. Overall, the high variability of wild accessions here examined represent a valid source to be exploited in future breeding programs for new or improved hop cultivars development.


Asunto(s)
Humulus/genética , Flujo Génico/genética , Variación Genética/genética , Humulus/fisiología , Italia , Repeticiones de Microsatélite/genética , Polimorfismo Genético/genética , Reproducción/genética , Reproducción Asexuada/genética
15.
BMC Plant Biol ; 10: 211, 2010 Sep 24.
Artículo en Inglés | MEDLINE | ID: mdl-20868482

RESUMEN

BACKGROUND: The cultivated olive (Olea europaea L.) is the most agriculturally important species of the Oleaceae family. Although many studies have been performed on plastid polymorphisms to evaluate taxonomy, phylogeny and phylogeography of Olea subspecies, only few polymorphic regions discriminating among the agronomically and economically important olive cultivars have been identified. The objective of this study was to sequence the entire plastome of olive and analyze many potential polymorphic regions to develop new inter-cultivar genetic markers. RESULTS: The complete plastid genome of the olive cultivar Frantoio was determined by direct sequence analysis using universal and novel PCR primers designed to amplify all overlapping regions. The chloroplast genome of the olive has an organisation and gene order that is conserved among numerous Angiosperm species and do not contain any of the inversions, gene duplications, insertions, inverted repeat expansions and gene/intron losses that have been found in the chloroplast genomes of the genera Jasminum and Menodora, from the same family as Olea.The annotated sequence was used to evaluate the content of coding genes, the extent, and distribution of repeated and long dispersed sequences and the nucleotide composition pattern. These analyses provided essential information for structural, functional and comparative genomic studies in olive plastids. Furthermore, the alignment of the olive plastome sequence to those of other varieties and species identified 30 new organellar polymorphisms within the cultivated olive. CONCLUSIONS: In addition to identifying mutations that may play a functional role in modifying the metabolism and adaptation of olive cultivars, the new chloroplast markers represent a valuable tool to assess the level of olive intercultivar plastome variation for use in population genetic analysis, phylogenesis, cultivar characterisation and DNA food tracking.


Asunto(s)
Genoma del Cloroplasto , Olea/clasificación , Olea/genética , Filogenia , Polimorfismo Genético , ADN de Cloroplastos , ADN de Plantas/genética , Orden Génico , Genoma de Planta , Repeticiones de Microsatélite , Análisis de Secuencia de ADN
16.
Mycologia ; 111(1): 26-39, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30676256

RESUMEN

Ectomycorrhizal ascomycetes belonging to the genus Tuber produce edible fruiting bodies known as truffles. Tuber aestivum, in particular, is a fungus appreciated worldwide and has a natural distribution throughout Europe. Most of the molecular studies conducted on this species have been focused on the question as to whether or not T. aestivum and the morphologically similar T. uncinatum are conspecific. Conversely, only a handful of studies have assessed the level and distribution of genetic diversity and occurrence of phylogeographic patterns in this species. Here, we analyzed the genetic diversity of T. aestivum over a wide geographic range, performing an extensive sampling of specimens from Turkey, which is novel, to the best of our knowledge. We compared the internal transcribed spacer (ITS) profiles of 45 samples collected in different Turkish areas with those of 144 samples from all over Europe. We identified 63 haplotypes, 32 of which were exclusively present in Turkey. The majority of these haplotyes were also population specific. Haplotype network analysis and statistical tests highlighted the presence of a genetic structure and phylogeographic pattern, with three spatially distinct genetic clusters (northeastern Europe, southern Europe, and Turkey), with Turkey representing a diversity hotspot. Based on these results, we hypothesize the presence of glacial refugia for T. aestivum in Turkey, whereas European populations likely experienced a population bottleneck. The possible occurrence of cryptic species among Turkish T. aestivum samples also emerged. Our results are of practical relevance for the marketing of T. aestivum truffles and mycorrhizal seedlings and the preservation of the biodiversity of this species.


Asunto(s)
ADN de Hongos/genética , ADN Ribosómico/genética , Variación Genética , Micorrizas/genética , Polimorfismo Genético , ADN Intergénico/genética , Haplotipos , Micorrizas/clasificación , Filogenia , Filogeografía , Turquía
17.
New Phytol ; 180(2): 466-478, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-18643942

RESUMEN

Tuber melanosporum is an ectomycorrhizal ascomycete producing edible ascocarps. The prevalent view is that this species strictly selfs, since genetic analyses have never detected heterozygotic profiles in its putatively diploid/dikaryotic gleba. The selfing model has also forged the experimental approaches to assess the population genetic variability. Here, the hypothesis that T. melanosporum outcrosses was tested. To this end, SSR (simple sequence repeats) and ITS (internal transcribed spacer) markers were employed to fingerprint asci and the surrounding gleba within single ascocarps. The distribution of genetic variability was also investigated at different geographical levels using single (SSR and ITS) and multilocus (AFLP, amplified fragment length polymorphism) markers. It is shown that T. melanosporum outcrosses since asci display additional alleles besides those present in the surrounding, uniparental, gleba. Furthermore, SSR and AFLP data reveal a high rate of intrapopulation diversity within samples from the same ground and root apparatus and the highest rate of genetic variability within the southernmost populations of the distributional range. These data call for a profound re-examination of T. melanosporum mating system, life cycle and strategies for managing man-made plantations. They also strongly support the idea that the last glaciation restricted the species distribution to the Italian and Spanish peninsulas.


Asunto(s)
Ascomicetos/genética , Cruzamientos Genéticos , ADN de Hongos , Variación Genética , Análisis del Polimorfismo de Longitud de Fragmentos Amplificados/métodos , ADN Intergénico , ADN Ribosómico , Genética de Población , Haplotipos , Endogamia , Repeticiones de Minisatélite , Micorrizas/genética , Polimorfismo de Nucleótido Simple , Reproducción/genética
18.
Int J Med Mushrooms ; 20(11): 1047-1063, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30806229

RESUMEN

Fomitopsis pinicola (Sw.) P. Karst. (Fomitopsidaceae) is a medicinal mushroom with a variety of healthy properties. In this study we tested the radical scavenging activity and antimicrobial and anticancer potential of methanol extracts of F. pinicola from central Italy. Molecular identification confirmed that the samples were F. pinicola; a Basic Local Alignment Search Tool search showed a close match (99% sequence identity) with European isolates of this species. The free radical scavenging capacities, measured by DPPH assay, showed that the extract activity was 3.5% that of Trolox. The MTT test, evaluated after 72 hours of treatment with increasing doses of extract (5-500 µg · mL-1), considerably inhibited proliferation in a dose-dependent manner in 2 human tumor cell lines. This reduction was coupled with a relevant induction of apoptosis in the human leukemia THP-1 cell line after 24 hours of treatment, but a relevant toxic effect occurred in the human colon adenocarcinoma HT29 cell line. The genotoxic potential of the methanol extracts was studied by single-cell gel electrophoresis of normal human leukocytes exposed to 20 µg extract at 37°C for 30 minutes; no DNA damage was observed. The F. pinicola methanol extract was found to have varying degrees of antifungal effects against the pathogenic fungi tested (minimum inhibitory concentration from 23.63 to 66.81 µg · mL-1). The results show that the tested F. pinicola extract has strong antimicrobial and chemo-preventive activities, but is a poor antioxidant.


Asunto(s)
Agaricales/química , Coriolaceae/química , Cuerpos Fructíferos de los Hongos/química , Antifúngicos/química , Antifúngicos/farmacología , Antineoplásicos/farmacología , Apoptosis/efectos de los fármacos , Compuestos de Bifenilo/química , Proliferación Celular , Supervivencia Celular/efectos de los fármacos , Fraccionamiento Químico , Coriolaceae/genética , Flavonoides/química , Flavonoides/farmacología , Depuradores de Radicales Libres , Células HT29 , Humanos , Metanol , Pruebas de Sensibilidad Microbiana , Fenoles/química , Fenoles/farmacología , Filogenia , Picratos/química , Células THP-1
19.
Nat Ecol Evol ; 2(12): 1956-1965, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30420746

RESUMEN

Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.


Asunto(s)
Ascomicetos/genética , Genoma Fúngico , Rasgos de la Historia de Vida , Micorrizas/genética , Simbiosis , Ascomicetos/fisiología , ADN de Hongos/análisis , Micorrizas/fisiología , Filogenia , Análisis de Secuencia de ADN
20.
FEMS Microbiol Lett ; 243(2): 411-6, 2005 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-15686843

RESUMEN

The Boletus edulis species complex includes ectomycorrhizal fungi producing edible mushrooms appreciated worldwide. However, species delineation is very difficult in these fungi, because it is based exclusively on a few, highly variable morphological features. As a consequence, a high number of taxa--including several varieties, subspecies and/or species sensu stricto--have been described in this species complex. In this paper we report on an extensive analysis of internal transcribed spacer of the nuclear rDNA region on a large sample of species of the B. edulis complex, mainly harvested in Italy, and representative of the European variability of this group. The molecular analysis allowed us to discriminate among and within B. edulis, B. aestivalis, B. pinophilus and B. aereus spp. and resolve their phylogenetic relationship.


Asunto(s)
Basidiomycota/clasificación , ADN Espaciador Ribosómico/análisis , Variación Genética , Basidiomycota/genética , ADN de Hongos/análisis , Datos de Secuencia Molecular , Filogenia , Análisis de Secuencia de ADN , Especificidad de la Especie
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