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1.
Proc Natl Acad Sci U S A ; 119(1)2022 01 04.
Artículo en Inglés | MEDLINE | ID: mdl-34969838

RESUMEN

Geminal diols-organic molecules carrying two hydroxyl groups at the same carbon atom-have been recognized as key reactive intermediates by the physical (organic) chemistry and atmospheric science communities as fundamental transients in the aerosol cycle and in the atmospheric ozonolysis reaction sequence. Anticipating short lifetimes and their tendency to fragment to water plus the aldehyde or ketone, free geminal diols represent one of the most elusive classes of organic reactive intermediates. Here, we afford an exceptional glance into the preparation of the previously elusive methanediol [CH2(OH)2] transient-the simplest geminal diol-via energetic processing of low-temperature methanol-oxygen ices. Methanediol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies. Electronic structure calculations reveal that methanediol is formed via excited state dynamics through insertion of electronically excited atomic oxygen into a carbon-hydrogen bond of the methyl group of methanol followed by stabilization in the icy matrix. The first preparation and detection of methanediol demonstrates its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition to formaldehyde and water. These findings advance our perception of the fundamental chemistry and chemical bonding of geminal diols and signify their role as an efficient sink of aldehydes and ketones in atmospheric environments eventually coupling the atmospheric chemistry of geminal diols and Criegee intermediates.

2.
J Am Chem Soc ; 146(17): 12174-12184, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38629886

RESUMEN

Orthocarboxylic acids─organic molecules carrying three hydroxyl groups at the same carbon atom─have been distinguished as vital reactive intermediates by the atmospheric science and physical (organic) chemistry communities as transients in the atmospheric aerosol cycle. Predicted short lifetimes and their tendency to dehydrate to a carboxylic acid, free orthocarboxylic acids, signify one of the most elusive classes of organic reactive intermediates, with even the simplest representative methanetriol (CH(OH)3)─historically known as orthoformic acid─not previously been detected experimentally. Here, we report the first synthesis of the previously elusive methanetriol molecule in low-temperature mixed methanol (CH3OH) and molecular oxygen (O2) ices subjected to energetic irradiation. Supported by electronic structure calculations, methanetriol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies and the detection of photoionization fragments. The first synthesis and detection of methanetriol (CH(OH)3) reveals its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition. These findings progress our fundamental understanding of the chemistry and chemical bonding of methanetriol, hydroxyperoxymethane (CH3OOOH), and hydroxyperoxymethanol (CH2(OH)OOH), which are all prototype molecules in the oxidation chemistry of the atmosphere.

3.
J Am Chem Soc ; 145(11): 6299-6309, 2023 Mar 22.
Artículo en Inglés | MEDLINE | ID: mdl-36913359

RESUMEN

Nickel (Ni)-catalyzed growth of a single- or rotated-graphene layer is a well-established process above 800 K. In this report, a Au-catalyzed, low-temperature, and facile route at 500 K for graphene formation is described. The substantially lower temperature is enabled by the presence of a surface alloy of Au atoms embedded within Ni(111), which catalyzes the outward segregation of carbon atoms buried in the Ni bulk at temperatures as low as 400-450 K. The resulting surface-bound carbon in turn coalesces into graphene above 450-500 K. Control experiments on a Ni(111) surface show no evidence of carbon segregation or graphene formation at these temperatures. Graphene is identified by its out-of-plane optical phonon mode at 750 cm-1 and its longitudinal/transverse optical phonon modes at 1470 cm-1 while surface carbon is identified by its C-Ni stretch mode at 540 cm-1, as probed by high-resolution electron energy-loss spectroscopy. Dispersion measurements of the phonon modes confirm the presence of graphene. Graphene formation is observed to be maximum at 0.4 ML Au coverage. The results of these systematic molecular-level investigations open the door to graphene synthesis at the low temperatures required for integration with complementary metal-oxide-semiconductor processes.

4.
Postgrad Med J ; 99(1178): 1220-1225, 2023 Nov 20.
Artículo en Inglés | MEDLINE | ID: mdl-37777188

RESUMEN

The relationship between diabetes mellitus (DM) and high serum uric acid is complex and controversial. Many epidemiological studies have reported a positive association, whereas others have reported an inverse association or none. In the pathogenesis of DM it is the intracellular urate that is more important than the extracellular and dissociation between the two is possible. Evidence suggests that high serum uric acid induces insulin resistance and beta cell failure in animal models. Reduction of intracellular uric acid can be achieved by dietary measures such as reducing fructose and salt intake, and uric acid-lowering drugs. We suggest that in the Western diet, these elements play a crucial role in pathogenesis of DM. To determine the precise and exact interrelationship between intracellular and extracellular uric acid, well-designed studies are required. Besides this, clinical trials are needed to determine whether intracellular and extracellular urate reduction will provide benefit in prevention and treatment of DM and complications associated with it.


Asunto(s)
Diabetes Mellitus , Resistencia a la Insulina , Animales , Humanos , Ácido Úrico , Diabetes Mellitus/tratamiento farmacológico
5.
J Assoc Physicians India ; 71(5): 11-12, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-37355818

RESUMEN

INTRODUCTION: The prevalence of hyperuricemia (HU) and hypouricemia (Hypo-U) is highly variable in different parts of India and there is a lack of data from the Eastern part of Uttar Pradesh. We designed this study in order to know the exact prevalence of HU and Hypo-U. MATERIALS AND METHODS: This is a cross-sectional study conducted in Varanasi. Data were collected from newly onset diabetic patients over a period of 1 year. RESULTS: Among the 312 diabetic patients, 12.5 and 19.23% were found to have HU and Hypo-U, respectively. Hypouricemic diabetic patients are phenotypically different. They are characterized by the female sex, higher glycated hemoglobin A1c (GlyHbA1c), higher estimated glomerular filtration rate (eGFR), lower body mass index (BMI), and less insulin resistance. CONCLUSION: The prevalence of HU and Hypo-U is high in newly-onset diabetic patients. Hypouricemic diabetic patients are phenotypically different. Hence routine screening of uric acid is essential for proper diagnosis and appropriate treatment of hypouricemic diabetic patients.


Asunto(s)
Diabetes Mellitus Tipo 2 , Hiperuricemia , Humanos , Femenino , Diabetes Mellitus Tipo 2/complicaciones , Diabetes Mellitus Tipo 2/epidemiología , Ácido Úrico , Estudios Transversales , Hiperuricemia/epidemiología , Prevalencia , Factores de Riesgo
6.
Sci Technol Adv Mater ; 23(1): 413-423, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35756168

RESUMEN

Electro-catalytic activity of Pt in the oxygen reduction reaction (ORR) depends strongly on its morphology. For an understanding of how morphology affects the catalytic properties of Pt, the investigation of Pt materials having well-defined morphologies is required. However, the challenges remain in rational and facile synthesis of Pt particles with tuneable well-defined morphology. A promising approach for the controlled synthesis of Pt particles is 'self-assembly of building blocks'. Here, we report a unique synthesis method to control Pt morphology by using a self-assembly route, where nanoflower, nanowire, nanosheet and nanotube morphologies of Pt particles have been produced in a controlled manner. In the growth mechanism, Pt nanoparticles (5-11 nm) are rapidly prepared by using NaBH4 as a reductant, followed by their agglomeration promoted by adding 1,2-ethylenediamine. The morphology of the resulting Pt particles can be easily controlled by tuning hydrophobic/hydrophilic interactions by the addition of isopropanol and H2O. Of the Pt particles prepared using this method, Pt nanotubes show the highest ORR catalytic activity in an acid electrolyte with an onset potential of 1.02 V vs. RHE.

7.
Angew Chem Int Ed Engl ; 61(51): e202212506, 2022 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-36240783

RESUMEN

Although pyridinic-nitrogen (pyri-N) doped graphene is highly active for the oxygen reduction reaction (ORR) of fuel cells in alkaline media, the activity critically decreases under acidic conditions. We report on how to prevent the deactivation based on the mechanistic understanding that O 2 + p y r i - N H + + e - → O 2 , a + p y r i - N H ${{{\rm O}}_{2}+{\rm p}{\rm y}{\rm r}{\rm i}{\rm { -}}{\rm N}{{\rm H}}^{+}+{{\rm e}}^{-}{\to }_{\ }^{{\rm \ }}{{\rm O}}_{2,{\rm a}}+{\rm p}{\rm y}{\rm r}{\rm i}{\rm { -}}{\rm N}{\rm H}}$ governs the ORR kinetics. First, we considered that the deactivation is due to the hydration of pyri-NH+ , leading to a lower shift of the redox potential. Introducing the hydrophobic cavity prevented the hydration of pyri-NH+ but inhibited the proton transport. We then increased proton conductivity in the hydrophobic cavity by introducing SiO2 particles coated with ionic liquid polymer/Nafion® which kept the high onset potentials with an increased current density even in acidic media.

8.
Angew Chem Int Ed Engl ; 60(10): 5121-5124, 2021 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-33174332

RESUMEN

The introduction of pyridinic nitrogen (pyri-N) into carbon-based electrocatalysts for the oxygen reduction reaction is considered to create new active sites. Herein, the role of pyri-N in such catalysts was investigated from a mechanistic viewpoint using carbon black (CB)-supported pyri-N-containing molecules as model catalysts; the highest activity was observed for 1,10-phenanthroline/CB. X-ray photoemission spectroscopy showed that in acidic electrolytes, both pyri-N atoms of 1,10-phenanthroline could be protonated to form pyridinium ions (pyri-NH+ ). In O2 -saturated electrolytes, one of the pyri-NH+ species was reduced to pyri-NH upon the application of a potential; no such reduction was observed in N2 -saturated electrolytes. This behavior was ascribed to electrochemical reduction of pyri-NH+ occurring simultaneously with the thermal adsorption of O2 , as supported by DFT calculations. According to these calculations, the coupled reduction was promoted by hydrophobic environments.

9.
Chemphyschem ; 21(9): 837-842, 2020 05 05.
Artículo en Inglés | MEDLINE | ID: mdl-32115829

RESUMEN

Understanding of the fundamental mechanisms involved in the decomposition of 1,3,5-trinitro-1,3,5-triazinane (RDX) still represents a major challenge for the energetic materials and physical (organic) chemistry communities mainly because multiple competing dissociation channels are likely involved and previous detection methods of the products are not isomer selective. In this study we exploited a microsecond pulsed infrared laser to decompose thin RDX films at 5 K under mild conditions to limit the fragmentation channels. The subliming decomposition products during the temperature programed desorption phase are detected using isomer selective single photoionization time-of-flight mass spectrometry (PI-ReTOF-MS). This technique enables us to assign a product signal at m/z=42 to ketene (H2 CCO), but not to diazomethane (H2 CNN; 42 amu) as speculated previously. Electronic structure calculations support our experimental observations and unravel the decomposition mechanisms of RDX leading eventually to the elusive ketene (H2 CCO) via an exotic, four-membered ring intermediate. This study highlights the necessity to exploit isomer-selective detection schemes to probe the true decomposition products of nitramine-based energetic materials.

10.
J Phys Chem A ; 124(34): 6801-6823, 2020 Aug 27.
Artículo en Inglés | MEDLINE | ID: mdl-32786999

RESUMEN

Energetic materials such as 1,3,5-trinitro-1,3,5-triazinane (RDX) are known to photodissociate when exposed to UV light. However, the fundamental photochemical process(es) that initiate the decomposition of RDX is (are) still debatable. In this study we investigate the photodissociation of solid-phase RDX at four distinct UV wavelengths (254 nm (4.88 eV), 236 nm (5.25 eV), 222 nm (5.58 eV), 206 nm (6.02 eV)) exploiting a surface science machine at 5 K. We also conducted dose-dependent studies at the highest and lowest photon energy of 206 nm (6.02 eV) and 254 nm (4.88 eV). The products were monitored online and in situ via infrared spectroscopy. During the temperature-programmed desorption phase, the subliming products were detected with a reflectron time-of-flight mass spectrometer coupled with soft-photoionization at 10.49 eV (PI-ReTOF-MS). Infrared spectroscopy revealed the formation of small molecules including nitrogen monoxide (NO), nitrogen monoxide dimer ([NO]2), dinitrogen trioxide (N2O3), carbon dioxide (CO2), carbon monoxide (CO), dinitrogen monoxide (N2O), water (H2O), and nitrite group (-ONO) while ReTOF-MS identified 32 cyclic and acyclic products. Among these, 11 products such as nitryl isocyanate (CN2O3), 5-nitro-1,3,5-triazinan-2-one (C3H6N4O3) and 1,5-dinitro-1,3,5-triazinan-2-one (C3H5N5O5) were detected for the first time in photodecomposition of RDX. Dose-dependent in combination with wavelength-dependent photolysis experiments aid to identify key primary and secondary products as well as distinguished pathways that are more preferred at lower and higher photon energies. Our experiments reveled that N-NO2 bond fission and nitro-nitrite isomerization are the initial steps in the UV photolysis of RDX. Reaction mechanisms are derived by comparing the experimental findings with previous electronic structure calculations to rationalize the origin of the observed products. The present study can assist in understanding the complex chemistry behind the photodissociation of electronically excited RDX molecule, thus bringing us closer to unraveling the decomposition mechanisms of nitramine-based explosives.

11.
Anal Bioanal Chem ; 411(8): 1509-1516, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30739196

RESUMEN

Doxorubicin (DOX), an anthracycline molecule, is currently one of the most widely used anticancer drugs in clinics. Systematic treatment of patients with DOX is known to be accompanied by several unpleasant side effects due to the toxicity of the drug. Thus, monitoring of DOX concentration in serum samples has become increasingly important to avoid side effects and ensure therapeutic efficiency. In this study, we discuss the construction of a disposable electrochemical sensor for the direct monitoring of DOX in clinical blood samples. The sensor is based on coating a gold electrode in a flexible integrated electrode construct formed on polyimide sheets using photolithography, with nitrogen-doped reduced graphene oxide (N-rGO) suspended in chitosan. Under optimized conditions, a linear relationship between the oxidative peak current and the concentration of DOX in the range of 0.010-15 µM with a detection limit of 10 nM could be achieved. The sensor was adapted to monitor DOX in serum samples of patients under anticancer treatment. Graphical abstract.


Asunto(s)
Antibióticos Antineoplásicos/sangre , Doxorrubicina/sangre , Monitoreo de Drogas/métodos , Grafito/química , Nitrógeno/química , Técnicas Electroquímicas/métodos , Electrodos , Humanos , Límite de Detección , Modelos Moleculares
12.
Phys Chem Chem Phys ; 21(9): 4755-4762, 2019 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-30758034

RESUMEN

Collagen, the most abundant protein in animals, has a unique triple helical structure comprising three parallel left-handed polyproline II (PPII) strands while each of the strands consists of a repeating sequence of X-Y-Gly, where X = proline (Pro) and Y = 4-hydroxyproline (Hyp). Collagen forms a stable triple helix of very long polypeptide strands despite the absence of intra-strand hydrogen bonding in the individual polypeptide chains. It has been reported that non-covalent n→π* interaction plays a significant role in stabilizing the individual polypeptide strands in collagen. However, there is no direct spectroscopic evidence for the presence of this interaction in collagen or its building block. Herein, we have observed for the first time a conformation-specific IR spectroscopic signature for C[double bond, length as m-dash]OC[double bond, length as m-dash]O n→π*-amide interaction in a capped Hyp residue, the most important monomer building block of collagen, using isolated gas phase IR spectroscopy and quantum chemistry calculations. The proof of the existence of this interaction in a model monomer has implications for better understanding of its role not only in structures of collagen but also most of the other proteins and larger peptides.

13.
J Phys Chem A ; 123(44): 9479-9497, 2019 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-31589046

RESUMEN

The decomposition mechanisms of 1,3,5-trinitro-1,3,5-triazinane (RDX) have been explored over the past decades, but as of now, a complete picture on these pathways has not yet emerged, as evident from the discrepancies in proposed reaction mechanisms and the critical lack of products and intermediates observed experimentally. This study exploited a surface science machine to investigate the decomposition of solid-phase RDX by energetic electrons at a temperature of 5 K. The products formed during irradiation were monitored online and in situ via infrared and UV-vis spectroscopy, and products subliming in the temperature programmed desorption phase were probed with a reflectron time-of-flight mass spectrometer coupled with soft photoionization at 10.49 eV (ReTOF-MS-PI). Infrared spectroscopy revealed the formation of water (H2O), carbon dioxide (CO2), dinitrogen oxide (N2O), nitrogen monoxide (NO), formaldehyde (H2CO), nitrous acid (HONO), and nitrogen dioxide (NO2). ReTOF-MS-PI identified 38 cyclic and acyclic products arranged into, for example, dinitro, mononitro, mononitroso, nitro-nitroso, and amines species. Among these molecules, 21 products such as N-methylnitrous amide (CH4N2O), 1,3,5-triazinane (C3H9N3), and N-(aminomethyl)methanediamine (C2H9N3) were detected for the first time in laboratory experiments; mechanisms based on the gas phase and condensed phase calculations were exploited to rationalize the formation of the observed products. The present studies reveal a rich, unprecedented chemistry in the condensed phase decomposition of RDX, which is significantly more complex than the unimolecular gas phase decomposition of RDX, thus leading us closer to an understanding of the decomposition chemistry of nitramine-based explosives.

14.
J Phys Chem A ; 123(28): 5995-6002, 2019 Jul 18.
Artículo en Inglés | MEDLINE | ID: mdl-31268326

RESUMEN

High-resolution X-ray crystallography and two-dimensional NMR studies demonstrate that water-mediated conventional hydrogen-bonding interactions (N-H···N, O-H···N, etc.) bridging two or more amino acid residues contribute to the stability of proteins and protein-ligand complexes. In this work, we have investigated single water-mediated selenium hydrogen-bonding interactions (unconventional hydrogen-bonding) between amino acid residues in proteins through extensive protein data bank (PDB) analysis coupled with gas-phase spectroscopy and quantum chemical calculation of a model complex consisting of indole, dimethyl selenide, and water. Here, indole and dimethyl selenide represent the amino acid residues tryptophan and selenomethionine, respectively. The current investigation demonstrates that the most stable structure of the model complex observed in the IR spectroscopy mimics single water-mediated selenium hydrogen-bonded structural motifs present in the crystal structures of proteins. The present work establishes that water-mediated Se hydrogen-bonding interactions are ubiquitous in proteins and the number of these interactions observed in the PDB is more than that of direct Se hydrogen-bonds present there.


Asunto(s)
Proteínas/química , Selenio/química , Agua/química , Biología Computacional , Cristalografía por Rayos X , Bases de Datos de Proteínas , Enlace de Hidrógeno , Indoles/química , Ligandos , Modelos Moleculares , Compuestos de Organoselenio/química , Teoría Cuántica , Selenometionina/química , Espectrofotometría Infrarroja , Triptófano/química
15.
J Chem Phys ; 151(10): 104309, 2019 Sep 14.
Artículo en Inglés | MEDLINE | ID: mdl-31521069

RESUMEN

Specific folded structures of peptides and proteins depend on the sequence of various amino acid residues as well as different types of noncovalent interactions induced by the backbone as well as side-chains of those residues. In general, secondary structures of peptides and proteins are stabilized by C6 (δ-turn), C7 (γ-turn), C10 (ß-turn), C13 (α-turn), and C15 (π-turn) hydrogen-bonded rings formed through inter-residue interactions. However, it has been reported recently that an intraresidue C5 hydrogen-bond, which is relatively weak in strength, can contribute significantly to the stability of peptides and proteins. The C5 hydrogen-bond is mostly present in the ß-sheet structures of peptides and proteins along with other inter-residue noncovalent interactions. In this work, we have studied structures and conformational preferences of a dipeptide Z-Gly-Pro-OH (Z = benzyloxycarbonyl) using mass-selected vibrationally resolved electronic spectroscopy and IR-UV double resonance spectroscopy coupled with quantum chemistry calculations. Two conformers of the peptide are observed in the experiment. One of the conformers has an extended ß-strand type structure stabilized by C5 hydrogen-bonding, while the other one is folded through O-H ⋯ π interaction. The noncovalent interactions present in the two observed structures of the peptide are validated by natural bond orbital and noncovalent interaction calculations.


Asunto(s)
Dipéptidos/química , Péptidos/química , Enlace de Hidrógeno , Pliegue de Proteína , Estructura Secundaria de Proteína
16.
Angew Chem Int Ed Engl ; 58(17): 5663-5667, 2019 04 16.
Artículo en Inglés | MEDLINE | ID: mdl-30851149

RESUMEN

With nearly 200 molecules detected in interstellar and circumstellar environments, the identification of the biologically relevant α-keto carboxylic acid, glyoxylic acid (HCOCOOH), is still elusive. Herein, the formation of glyoxylic acid via cosmic-ray driven, non-equilibrium chemistry in polar interstellar ices of carbon monoxide (CO) and water (H2 O) at 5 K via barrierless recombination of formyl (HCO) and hydroxycarbonyl radicals (HOCO) is reported. In temperature-programmed desorption experiments, the subliming neutral molecules were selectively photoionized and identified based on the ionization energy and distinct mass-to-charge ratios in combination with isotopically labeled experiments exploiting reflectron time-of-flight mass spectrometry. These studies unravel a key reaction path to glyoxylic acid, an organic molecule formed in interstellar ices before subliming in star-forming regions like SgrB2(N), thus providing a critical entry point to prebiotic organic synthesis.

17.
Phys Chem Chem Phys ; 20(27): 18361-18373, 2018 Jul 11.
Artículo en Inglés | MEDLINE | ID: mdl-29942975

RESUMEN

The competition and cooperation between weak intermolecular interactions are important in determining the conformational preferences of molecules. Understanding the relative strengths of these effects in the context of potential drug candidates is therefore essential. We use a combination of gas-phase spectroscopy and quantum-chemical calculations to elucidate the nature of such interactions for the analgesic salicin [2-(hydroxymethyl)phenyl ß-d-glucopyranoside], an analog of aspirin found in willow bark. Of several possible conformers, only three are observed experimentally, and these are found to correspond with the three lowest energy conformers obtained from density functional theory calculations and simulated Franck-Condon spectra. Natural bond orbital analyses show that these are characterized by a subtle interplay between weak n→π* interaction and conventional strong hydrogen bond, with additional insights into this interaction provided by analysis of quantum theory of atoms in molecules and symmetry-adapted perturbation theory calculations. In contrast, the higher energy conformers, which are not observed experimentally, are mostly stabilized by the hydrogen bond with negligible contribution of n→π* interaction. The n→π* interaction results in a preference for the benzyl alcohol group of salicin to adopt a gauche conformation, a characteristic also found when salicin is bound to the ß-glucosidase enzyme. As such, understanding the interplay between these weak interactions has significance in the rationalization of protein structures.


Asunto(s)
Analgésicos/química , Alcoholes Bencílicos/química , Glucósidos/química , Enlace de Hidrógeno , Modelos Moleculares , Conformación Molecular , Teoría Cuántica , Termodinámica , beta-Glucosidasa/química
18.
Chemphyschem ; 18(7): 828-838, 2017 Apr 05.
Artículo en Inglés | MEDLINE | ID: mdl-28124829

RESUMEN

π-Hydrogen bonding interactions are ubiquitous in both materials and biology. Despite their relatively weak nature, great progress has been made in their investigation by experimental and theoretical methods, but this becomes significantly more complicated when secondary intermolecular interactions are present. In this study, the effect of successive methyl substitution on the supramolecular structure and interaction energy of indole⋅⋅⋅methylated benzene (ind⋅⋅⋅n-mb, n=1-6) complexes is probed through a combination of supersonic jet experiments and benchmark-quality quantum chemical calculations. It is demonstrated that additional secondary interactions introduce a subtle interplay among electrostatic and dispersion forces, as well as steric repulsion, which fine-tunes the overall structural motif. Resonant two-photon ionization and IR-UV double-resonance spectroscopy techniques are used to probe jet-cooled ind⋅⋅⋅n-mb (n=2, 3, 6) complexes, with redshifting of the N-H IR stretching frequency showing that increasing the degree of methyl substitution increases the strength of the primary N-H⋅⋅⋅π interaction. Ab initio harmonic frequency and binding energy calculations confirm this trend for all six complexes. Electronic spectra of the three dimers are broad and structureless, with quantum chemical calculations revealing that this is likely to be due to multiple tilted conformations of each dimer possessing similar stabilization energies.


Asunto(s)
Benceno/química , Teoría Cuántica , Enlace de Hidrógeno , Sustancias Macromoleculares/química , Espectrometría de Masas , Espectrofotometría Infrarroja , Espectrofotometría Ultravioleta , Electricidad Estática
19.
Phys Chem Chem Phys ; 19(35): 24179-24187, 2017 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-28840208

RESUMEN

Subsequent to the recent re-definition of hydrogen bonding by the IUPAC committee, there has been a growing search for finding the presence of this ever interesting non-covalent interaction between a hydrogen atom in an X-H group and any other atom in the periodic table. In recent gas phase experiments, it has been observed that hydrogen bonding interactions involving S and Se are of similar strength to those with an O atom. However, there is no clear explanation for the unusual strength of this interaction in the case of hydrogen bond acceptors which are not conventional electronegative atoms. In this work, we have explored the nature of Se hydrogen bonding by studying indoledimethyl selenide (indmse) and phenoldimethyl selenide (phdmse) complexes using gas phase IR spectroscopy and quantum chemistry calculations. We have found through various energy decomposition analysis (EDA) methods and natural bond orbital (NBO) calculations that, along with electrostatics and polarization, charge transfer interactions are important to understand Se/S hydrogen bonding and there is a delicate balance between the various interactions that plays the crucial role rather than a single component of the interaction energy. An in-depth understanding of this type of non-covalent interaction has immense significance in biology as amino acids containing S and Se are widely present in proteins and hence hydrogen bonding interactions involving S and Se atoms contribute to the folding of proteins.

20.
J Phys Chem A ; 120(31): 6258-69, 2016 Aug 11.
Artículo en Inglés | MEDLINE | ID: mdl-27429098

RESUMEN

The n → π* interaction is a weak but important noncovalent interaction present in biomolecules and other compounds. Complexes between 7-azaindole and 2,6-difluorinated pyridines were demonstrated earlier to interact not only via an expected strong hydrogen bond but also by a weaker and unexpected n → π* interaction between the nucleophilic nitrogen atom of the 7-azaindole and the electrophilic π-system of the pyridine ring. This system provides a unique and convenient framework upon which to investigate the effect that distal substitution on the 7-azaindole ring has on the strength of the n → π* interaction. Herein we describe our thorough analysis of these effects by applying a variety of diverse methods including NBO, ETS-NOCV, and AIM. Very good agreement in trends was observed among all these diverse methods of analysis. Substitution at the position para to the nucleophilic nitrogen atom of the 7-azaindole ring with electron-donating groups weakened the hydrogen bond interaction with the 2,6-difluoropyridine but enhanced the n → π* interaction. Substitution with electron-withdrawing groups had the opposite effect. In addition, good correlation of the results of the calculations with the substituents' Hammett σp values was observed. Energy decomposition analysis (EDA) corroborated the conclusions derived by the other methods of analysis.

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