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Genomics ; 113(1 Pt 1): 11-19, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33249173

RESUMEN

To explore potential critical genes and identify circular RNAs (circRNAs) that act as the competitive endogenous RNA (ceRNA) in a hypoxic pulmonary hypertension (HPH) rat model. Constructed rat model, and a bioinformatics method was used to analyse differentially expressed (DE) genes and construct a circRNA-miRNA-mRNA ceRNA regulatory network. Then, qRT-PCR was used to verify. The significant DEcircRNAs/DEmiRNAs/DEmRNAs was showed, and a ceRNA network with 8 DEcircRNAs, 9 DEmiRNAs and 46 DEmRNAs were constructed. The functional enrichment suggested the inflammatory response, NF-κB signalling, MAPK cascade and Toll-like receptor were associated with HPH. Further assessment confirmed that circ_002723, circ_008021, circ_016925 and circ_020581 could have a potential ceRNA mechanism by sponging miR-23a or miR-21 to control downstream target gene and be involved in the pathophysiology of HPH. The qRT-PCR validation results were consistent with the RNA-Seq results. This study revealed potentially important genes, pathways and ceRNA regulatory networks in HPH.


Asunto(s)
Redes Reguladoras de Genes , Hipertensión Pulmonar/genética , Hipoxia/genética , Mapas de Interacción de Proteínas , ARN Circular/metabolismo , Animales , Hipertensión Pulmonar/metabolismo , Hipoxia/metabolismo , Sistema de Señalización de MAP Quinasas , Masculino , FN-kappa B/metabolismo , ARN Circular/genética , Ratas , Ratas Sprague-Dawley , Receptores Toll-Like/metabolismo , Transcriptoma
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