Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats.

The evolutionarily ancient Aquificales bacterium Sulfurihydrogenibium spp. dominates filamentous microbial mat communities in shallow, fast-flowing, and dysoxic hot-spring drainage systems around the world. In the present study, field observations of these fettuccini-like microbial mats at Mammoth Hot Springs in Yellowstone National Park are integrated with geology, geochemistry, hydrology, microscopy, and multi-omic molecular biology analyses. Strategic sampling of living filamentous mats along with the hot-spring CaCO3 (travertine) in which they are actively being entombed and fossilized has permitted the first direct linkage of Sulfurihydrogenibium spp. physiology and metabolism with the formation of distinct travertine streamer microbial biomarkers. Results indicate that, during chemoautotrophy and CO2 carbon fixation, the 87-98% Sulfurihydrogenibium-dominated mats utilize chaperons to facilitate enzyme stability and function. High-abundance transcripts and proteins for type IV pili and extracellular polymeric substances (EPSs) are consistent with their strong mucus-rich filaments tens of centimeters long that withstand hydrodynamic shear as they become encrusted by more than 5 mm of travertine per day. Their primary energy source is the oxidation of reduced sulfur (e.g., sulfide, sulfur, or thiosulfate) and the simultaneous uptake of extremely low concentrations of dissolved O2 facilitated by bd-type cytochromes. The formation of elevated travertine ridges permits the Sulfurihydrogenibium-dominated mats to create a shallow platform from which to access low levels of dissolved oxygen at the virtual exclusion of other microorganisms. These ridged travertine streamer microbial biomarkers are well preserved and create a robust fossil record of microbial physiological and metabolic activities in modern and ancient hot-spring ecosystems.

A STUDY OF SPATIAL FEATURES OF CLONES IN A POPULATION OF BRACKEN FERN, PTERIDIUM AQUILINUM (DENNSTAEDTIACEAE).

Allozymes were used to study the spatial attributes of clones (genets) comprising a population of Pteridium aquilinum (L.) Kuhn var. latiusculum (Desv.) Underw. ex Heller (bracken fern) in the Appalachian Mountains of Virginia. Ramets (individual leaves) were sampled at intervals of 165 m (or less in some cases) and genotyped for six polymorphic isozyme loci to produce a map depicting the spatial patterning of genets. Forty-five distinct genotypes were detected, 14 of which were sampled more than once, five of these more than four times. Genotype proportions at all loci except Pgm-1 conformed to Hardy-Weinberg expectations. Estimation of allele frequencies in the population used a "round-robin" approach that removed any upward bias for rare alleles that distinguish genets. Based on these allele frequencies, the probability that each genotype could arise independently and be sampled was calculated. Some genotypes represented by widely separated ramets had very low probabilities of re-encounter, documenting fragmentation of widespread genets. Coarse-scale mapping indicated a population consisting of many small genets and a few very large ones (up to 1,015 m across). The larger genets tended to be irregular in shape, fragmented, and overlapping. Fine scale mapping of individual fronds in spatially discrete patches of ramets revealed extensive intergrowth of genets, indicating that P. aquilinum exhibits a "guerrilla-type" clonal morphology.

Reconstructing Dryopteris "semicristata" (Dryopteridaceae): Molecular profiles of tetraploids verify their undiscovered diploid ancestor.

PREMISE OF THE STUDY: Discovering missing ancestors is essential to understanding the evolutionary history of biodiversity on Earth. Evidence from extinct species can provide links for reconstructing intricate patterns of reticulate relationships among extant descendents. When fossils are unavailable and other evidence yields competing hypotheses to explain species ancestry, data from proteins and DNA can help resolve conflicts and generate novel perspectives. The identity of a parent shared by two tetraploid species in the cosmopolitan fern genus Dryopteris has remained elusive for more than 50 years. Based on available data, four hypotheses were developed previously, each providing a different resolution to this uncertainty. • METHODS: New molecular evidence from studies of isozymes and restriction site analysis of chloroplast DNA tested the competing hypotheses about the diploid ancestors of these two extant Dryopteris polyploids. • KEY RESULTS: The results falsify two of the hypotheses, resolve the uncertainty in the third, and support the fourth. • CONCLUSIONS: Our data validate the prior existence of Dryopteris "semicristata," which was proposed 38 years ago as a diploid progenitor of the allotetraploids D. cristata and D. carthusiana but has never been collected. After developing a phylogeny using the new molecular data, we describe a plausible morphology for D. "semicristata" by extrapolating likely character states from related extant species.

Heterozygote advantage in the American chestnut, Castanea dentata (Fagaceae).

The American chestnut (Castanea dentata; Fagaceae) was a dominant canopy tree in the Appalachian Mountains of North America. Since the introduction of the chestnut blight fungus (Cryphonectria parasitica; Valsaceae) in America, the American chestnut has been reduced to a predominantly clonal, understory species. Our objective was to determine whether the ecological changes and absence of new recruits have influenced the population genetics of American chestnut. Leaf samples were collected from four populations in southwestern Virginia. Electrophoretic data from five polymorphic loci were used to determine the genetic diversity and population structure of the populations and subpopulations. Growth data and infection status were recorded for one of the populations to determine their relationship with heterozygosity. F statistics revealed a significant amount of differentiation among subpopulations and an excess of heterozygotes within subpopulations. Heterozygous individuals also had higher rates of vegetative growth. The superior performance and excess of heterozygotes suggests that selection favors heterozygous individuals. The prolonged absence of sexual reproduction in C. dentata has allowed subtle fitness differences to accumulate to the extent that they have had significant effects on the genetics of chestnut populations.