A Survey of Data Mining and Deep Learning in Bioinformatics.

The fields of medicine science and health informatics have made great progress recently and have led to in-depth analytics that is demanded by generation, collection and accumulation of massive data. Meanwhile, we are entering a new period where novel technologies are starting to analyze and explore knowledge from tremendous amount of data, bringing limitless potential for information growth. One fact that cannot be ignored is that the techniques of machine learning and deep learning applications play a more significant role in the success of bioinformatics exploration from biological data point of view, and a linkage is emphasized and established to bridge these two data analytics techniques and bioinformatics in both industry and academia. This survey concentrates on the review of recent researches using data mining and deep learning approaches for analyzing the specific domain knowledge of bioinformatics. The authors give a brief but pithy summarization of numerous data mining algorithms used for preprocessing, classification and clustering as well as various optimized neural network architectures in deep learning methods, and their advantages and disadvantages in the practical applications are also discussed and compared in terms of their industrial usage. It is believed that in this review paper, valuable insights are provided for those who are dedicated to start using data analytics methods in bioinformatics.

Computational medical imaging and hemodynamics framework for functional analysis and assessment of cardiovascular structures.

Cardiac dysfunction constitutes common cardiovascular health issues in the society, and has been an investigation topic of strong focus by researchers in the medical imaging community. Diagnostic modalities based on echocardiography, magnetic resonance imaging, chest radiography and computed tomography are common techniques that provide cardiovascular structural information to diagnose heart defects. However, functional information of cardiovascular flow, which can in fact be used to support the diagnosis of many cardiovascular diseases with a myriad of hemodynamics performance indicators, remains unexplored to its full potential. Some of these indicators constitute important cardiac functional parameters affecting the cardiovascular abnormalities. With the advancement of computer technology that facilitates high speed computational fluid dynamics, the realization of a support diagnostic platform of hemodynamics quantification and analysis can be achieved. This article reviews the state-of-the-art medical imaging and high fidelity multi-physics computational analyses that together enable reconstruction of cardiovascular structures and hemodynamic flow patterns within them, such as of the left ventricle (LV) and carotid bifurcations. The combined medical imaging and hemodynamic analysis enables us to study the mechanisms of cardiovascular disease-causing dysfunctions, such as how (1) cardiomyopathy causes left ventricular remodeling and loss of contractility leading to heart failure, and (2) modeling of LV construction and simulation of intra-LV hemodynamics can enable us to determine the optimum procedure of surgical ventriculation to restore its contractility and health This combined medical imaging and hemodynamics framework can potentially extend medical knowledge of cardiovascular defects and associated hemodynamic behavior and their surgical restoration, by means of an integrated medical image diagnostics and hemodynamic performance analysis framework.

Training Classifiers with Shadow Features for Sensor-Based Human Activity Recognition.

In this paper, a novel training/testing process for building/using a classification model based on human activity recognition (HAR) is proposed. Traditionally, HAR has been accomplished by a classifier that learns the activities of a person by training with skeletal data obtained from a motion sensor, such as Microsoft Kinect. These skeletal data are the spatial coordinates (x, y, z) of different parts of the human body. The numeric information forms time series, temporal records of movement sequences that can be used for training a classifier. In addition to the spatial features that describe current positions in the skeletal data, new features called 'shadow features' are used to improve the supervised learning efficacy of the classifier. Shadow features are inferred from the dynamics of body movements, and thereby modelling the underlying momentum of the performed activities. They provide extra dimensions of information for characterising activities in the classification process, and thereby significantly improve the classification accuracy. Two cases of HAR are tested using a classification model trained with shadow features: one is by using wearable sensor and the other is by a Kinect-based remote sensor. Our experiments can demonstrate the advantages of the new method, which will have an impact on human activity detection research.

Computational evaluation of smoothed particle hydrodynamics for implementing blood flow modelling through CT reconstructed arteries.

Simulation of blood flow in a stenosed artery using Smoothed Particle Hydrodynamics (SPH) is a new research field, which is a particle-based method and different from the traditional continuum modelling technique such as Computational Fluid Dynamics (CFD). Both techniques harness parallel computing to process hemodynamics of cardiovascular structures. The objective of this study is to develop and test a new robust method for comparison of arterial flow velocity contours by SPH with the well-established CFD technique, and the implementation of SPH in computed tomography (CT) reconstructed arteries. The new method was developed based on three-dimensional (3D) straight and curved arterial models of millimeter range with a 25% stenosis in the middle section. In this study, we employed 1,000 to 13,000 particles to study how the number of particles influences SPH versus CFD deviation for blood-flow velocity distribution. Because further increasing the particle density has a diminishing effect on this deviation, we have determined a critical particle density of 1.45 particles/mm2 based on Reynolds number (Re = 200) at the inlet for an arterial flow simulation. Using this critical value of particle density can avoid unnecessarily big computational expenses that have no further effect on simulation accuracy. We have particularly shown that the SPH method has a big potential to be used in the virtual surgery system, such as to simulate the interaction between blood flow and the CT reconstructed vessels, especially those with stenosis or plaque when encountering vasculopathy, and for employing the simulation results output in clinical surgical procedures.

Discrete Element Framework for Modelling Extracellular Matrix, Deformable Cells and Subcellular Components.

This paper presents a framework for modelling biological tissues based on discrete particles. Cell components (e.g. cell membranes, cell cytoskeleton, cell nucleus) and extracellular matrix (e.g. collagen) are represented using collections of particles. Simple particle to particle interaction laws are used to simulate and control complex physical interaction types (e.g. cell-cell adhesion via cadherins, integrin basement membrane attachment, cytoskeletal mechanical properties). Particles may be given the capacity to change their properties and behaviours in response to changes in the cellular microenvironment (e.g., in response to cell-cell signalling or mechanical loadings). Each particle is in effect an 'agent', meaning that the agent can sense local environmental information and respond according to pre-determined or stochastic events. The behaviour of the proposed framework is exemplified through several biological problems of ongoing interest. These examples illustrate how the modelling framework allows enormous flexibility for representing the mechanical behaviour of different tissues, and we argue this is a more intuitive approach than perhaps offered by traditional continuum methods. Because of this flexibility, we believe the discrete modelling framework provides an avenue for biologists and bioengineers to explore the behaviour of tissue systems in a computational laboratory.

Ultrasound guided double injection of blood into cisterna magna: a rabbit model for treatment of cerebral vasospasm.

BACKGROUND: Double injection of blood into cisterna magna using a rabbit model results in cerebral vasospasm. An unacceptably high mortality rate tends to limit the application of model. Ultrasound guided puncture can provide real-time imaging guidance for operation. The aim of this paper is to establish a safe and effective rabbit model of cerebral vasospasm after subarachnoid hemorrhage with the assistance of ultrasound medical imaging. METHODS: A total of 160 New Zealand white rabbits were randomly divided into four groups of 40 each: (1) manual control group, (2) manual model group, (3) ultrasound guided control group, and (4) ultrasound guided model group. The subarachnoid hemorrhage was intentionally caused by double injection of blood into their cisterna magna. Then, basilar artery diameters were measured using magnetic resonance angiography before modeling and 5 days after modeling. RESULTS: The depth of needle entering into cisterna magna was determined during the process of ultrasound guided puncture. The mortality rates in manual control group and model group were 15 and 23 %, respectively. No rabbits were sacrificed in those two ultrasound guided groups. We found that the mortality rate in ultrasound guided groups decreased significantly compared to manual groups. Compared with diameters before modeling, the basilar artery diameters after modeling were significantly lower in manual and ultrasound guided model groups. The vasospasm aggravated and the proportion of severe vasospasms was greater in ultrasound guided model group than that of manual group. In manual model group, no vasospasm was found in 8 % of rabbits. CONCLUSIONS: The ultrasound guided double injection of blood into cisterna magna is a safe and effective rabbit model for treatment of cerebral vasospasm.

MRI signal intensity differentiation of brainstem encephalitis induced by Enterovirus 71: a classification approach for acute and convalescence stages.

BACKGROUND: The objective of this study is to assess standardized histograms of signal intensities of T1 signal and T2 signal on sagittal view without enhancement during (1) acute stage, and (2) convalescence stage of pediatric patients with Enterovirus 71 related brainstem encephalitis (BE), and with respect to (3) healthy normal. METHODS: Our subjects were hospitalized between March 2010 and October 2012, and underwent pre- and post-contrast MRI studies. The research question to be answered is whether the comparison of the MRI image intensity histograms and relevant statistical quantification can add new knowledge to the diagnosis of BE patients. So, both 25 cases in acute stage with prolonged T1 and T2 signal, without enhancement, and 13 cases in convalescence stage were introduced. In additional, a healthy group with 25 cases was recruited for comparison. RESULTS: MRI signal intensity histogram changes of the lesions were compared at the acute and convalescence stages of the disease. Our preliminary results suggest that standardized histograms of signal intensities and their statistical properties are able to provide diagnostic information for the clinical assessment of the disease. Different stages pertaining to the histogram plots comparison showed that overall T1 signal intensity values increase as we traverse from the acute stage to the convalescence stage. And then for the healthy subjects, the T2 signal intensity values changed their magnitudes in a reverse direction. However, exceptions of this can happen in four cases where the primary lesions occurred in the brainstem that developed encephalomalacia resulting in a lower signal in T1WI and higher signal in T2WI. Statistical analysis revealed there was significant difference of T1 signal intensity among the three groups; and also, the T2 signal intensity was lower than other two groups. CONCLUSIONS: Standardized histogram of T1 and T2 intensity provide valuable and useful information for disease diagnosis and evaluation, which can potentially help medical doctors to save the lives of children.

Automated cardiac vortex ring identification and characterization based on Recurrent All-Pairs Field Transforms and Lagrangian Averaged Vorticity Deviation.

Automated identification of cardiac vortices is a formidable task due to the complex nature of blood flow within the heart chambers. This study proposes a novel approach that algorithmically characterizes the identification criteria of these cardiac vortices based on Lagrangian Averaged Vorticity Deviation (LAVD). For this purpose, the Recurrent All-Pairs Field Transforms (RAFT) is employed to assess the optical flow over the Phase Contrast Magnetic Resonance Imaging (PC-MRI), and to construct a continuous blood flow velocity field and reduce errors that arise from the integral process of LAVD. Additionally, Generalized Hough Transform (GHT) is applied for automated depiction of the structure of cardiac vortices. The effectiveness of this method is demonstrated and validated by the computation of the acquired cardiac flow data. The results of this comprehensive visual and analytical study show that the evolution of cardiac vortices can be effectively described and displayed, and the RAFT framework for optical flow can synthesize the in-between PC-MRIs with high accuracy. This allows cardiologists to acquire a deeper understanding of intracardiac hemodynamics and its impact on cardiac functional performance.

HViT: Hybrid vision inspired transformer for the assessment of carotid artery plaque by addressing the cross-modality domain adaptation problem in MRI.

BACKGROUND: Medical image classification is crucial for accurate and efficient diagnosis, and deep learning frameworks have shown significant potential in this area. When a general learning deep model is directly deployed to a new dataset with heterogeneous features, the effect of domain shifts is usually ignored, which degrades the performance of deep learning models and leads to inaccurate predictions. PURPOSE: This study aims to propose a framework that utilized the cross-modality domain adaptation and accurately diagnose and classify MRI scans and domain knowledge into stable and vulnerable plaque categories by a modified Vision Transformer (ViT) model for the classification of MRI scans and transformer model for domain knowledge classification. METHODS: This study proposes a Hybrid Vision Inspired Transformer (HViT) framework that employs a convolutional layer for image pre-processing and normalization and a 3D convolutional layer to enable ViT to classify 3D images. Our proposed HViT framework introduces a slim design with a multi-branch network and channel attention, improving patch embedding extraction and information learning. Auxiliary losses target shallow features, linking them with deeper ones, enhancing information gain, and model generalization. Furthermore, replacing the MLP Head with RNN enables better backpropagation for improved performance. Moreover, we utilized a modified transformer model with LSTM positional encoding and Golve word vector to classify domain knowledge. By using ensemble learning techniques, specifically stacking ensemble learning with hard and soft prediction, we combine the predictive power of both models to address the cross-modality domain adaptation problem and improve overall performance. RESULTS: The proposed framework achieved an accuracy of 94.32% for carotid artery plaque classification into stable and vulnerable plaque by addressing the cross-modality domain adaptation problem and improving overall performance. CONCLUSION: The model was further evaluated using an independent dataset acquired from different hardware protocols. The results demonstrate that the proposed deep learning model significantly improves the generalization ability across different MRI scans acquired from different hardware protocols without requiring additional calibration data.

KFPredict: An ensemble learning prediction framework for diabetes based on fusion of key features.

BACKGROUND AND OBJECTIVE: Diabetes is a disease that requires early detection and early treatment, and complications are likely to occur in late stages of the disease, threatening the life of patients. Therefore, in order to diagnose diabetic patients as early as possible, it is necessary to establish a model that can accurately predict diabetes. METHODOLOGY: This paper proposes an ensemble learning framework: KFPredict, which combines multi-input models with key features and machine learning algorithms. We first propose a multi-input neural network model (KF_NN) that fuses key features and uses a decision tree-based selection recursive feature elimination algorithm and correlation coefficient method to screen out the key feature inputs and secondary feature inputs in the model. We then ensemble KF_NN with three machine learning algorithms (i.e., Support Vector Machine, Random Forest and K-Nearest Neighbors) for soft voting to form our predictive classifier for diabetes prediction. RESULTS: Our framework demonstrates good prediction results on the test set with a sensitivity of 0.85, a specificity of 0.98, and an accuracy of 93.5%. Compared with the single prediction method KFPredict, the accuracy is up to 18.18% higher. Concurrently, we also compared KFPredict with the existing prediction methods. It still has good prediction performance, and the accuracy rate is improved by up to 14.93%. CONCLUSION: This paper constructs a diabetes prediction framework that combines multi-input models with key features and machine learning algorithms. Taking tthe PIMA diabetes dataset as the test data, the experiment shows that the framework presents good prediction results.

Functional magnetic resonance imaging providing the brain effect mechanism of acupuncture and moxibustion treatment for depression.

The efficacy of acupuncture and moxibustion in the treatment of depression has been fully recognized internationally. However, its central mechanism is still not developed into a unified standard, and it is generally believed that the central mechanism is regulation of the cortical striatum thalamic neural pathway of the limbic system. In recent years, some scholars have applied functional magnetic resonance imaging (fMRI) to study the central mechanism and the associated brain effects of acupuncture and moxibustion treatment for depression. This study reviews the acupuncture and moxibustion treatment of depression from two aspects: (1) fMRI study of the brain function related to the acupuncture treatment of depression: different acupuncture and moxibustion methods are summarized, the fMRI technique is elaborately explained, and the results of fMRI study of the effects of acupuncture are analyzed in detail, and (2) fMRI associated "brain functional network" effects of acupuncture and moxibustion on depression, including the effects on the hippocampus, the amygdala, the cingulate gyrus, the frontal lobe, the temporal lobe, and other brain regions. The study of the effects of acupuncture on brain imaging is not adequately developed and still needs further improvement and development. The brain function networks associated with the acupuncture treatment of depression have not yet been adequately developed to provide a scientific and standardized mechanism of the effects of acupuncture. For this purpose, this study analyzes in-depth the clinical studies on the treatment of anxiety and depression by acupuncture and moxibustion, by depicting how the employment of fMRI technology provides significant imaging changes in the brain regions. Therefore, the study also provides a reference for future clinical research on the treatment of anxiety and depression.

Medical image fusion using enhanced cross-visual cortex model based on artificial selection and impulse-coupled neural network.

OBJECTIVE: The traditional ICM is widely used in applications, such as image edge detection and image segmentation. However, several model parameters must be set, which tend to lead to reduced accuracy and increased cost. As medical images have more complex edges, contours and details, more suitable combinatorial algorithms are needed to handle the pathological diagnosis of multiple cerebral infarcts and acute strokes, resulting in the findings being more applicable, as well as having good clinical value. METHODS: To better solve the medical image fusion and diagnosis problems, this paper introduces the image fusion algorithm based on the combination of NSCT and improved ICM and proposes low-frequency, sub-band fusion rules and high-frequency sub-band fusion rules. The above method is applied to the fusion of CT/MRI images, subsequently, three other fusion algorithms, including NSCT-SF-PCNN, NSCT-SR-PCNN and Adaptive-PCNN are compared, and the simulation results of image fusion are analyzed and validated. RESULTS: According to the experimental findings, the suggested algorithm performs better than other fusion algorithms in terms of five objective evaluation metrics or subjective evaluation. The NSCT transform and the improved ICM were combined, and the outcomes were evaluated against those of other fusion algorithms. The CT/MRI medical images of healthy brain tissue, numerous cerebral infarcts and acute strokes were combined using this technique. CONCLUSION: Medical image fusion using Adaptive-PCNN produces satisfactory results, not only in relation to improved image clarity but also in terms of outstanding edge information, high contrast and brightness.

End to end vision transformer architecture for brain stroke assessment based on multi-slice classification and localization using computed tomography.

BACKGROUND: Brain stroke is a leading cause of disability and death worldwide, and early diagnosis and treatment are critical to improving patient outcomes. Current stroke diagnosis methods are subjective and prone to errors, as radiologists rely on manual selection of the most important CT slice. This highlights the need for more accurate and reliable automated brain stroke diagnosis and localization methods to improve patient outcomes. PURPOSE: In this study, we aimed to enhance the vision transformer architecture for the multi-slice classification of CT scans of each patient into three categories, including Normal, Infarction, Hemorrhage, and patient-wise stroke localization, based on end-to-end vision transformer architecture. This framework can provide an automated, objective, and consistent approach to stroke diagnosis and localization, enabling personalized treatment plans based on the location and extent of the stroke. METHODS: We modified the Vision Transformer (ViT) in combination with neural network layers for the multi-slice classification of brain CT scans of each patient into normal, infarction, and hemorrhage classes. For stroke localization, we used the ViT architecture and convolutional neural network layers to detect stroke and localize it by bounding boxes for infarction and hemorrhage regions in a patient-wise manner based on multi slices. RESULTS: Our proposed framework achieved an overall accuracy of 87.51% in classifying brain CT scan slices and showed high precision in localizing the stroke patient-wise. Our results demonstrate the potential of our method for accurate and reliable stroke diagnosis and localization. CONCLUSION: Our study enhanced ViT architecture for automated stroke diagnosis and localization using brain CT scans, which could have significant implications for stroke management and treatment. The use of deep learning algorithms can provide a more objective and consistent approach to stroke diagnosis and potentially enable personalized treatment plans based on the location and extent of the stroke. Further studies are needed to validate our method on larger and more diverse datasets and to explore its clinical utility in real-world settings.

Brain image segmentation of the corpus callosum by combining Bi-Directional Convolutional LSTM and U-Net using multi-slice CT and MRI.

BACKGROUND AND OBJECTIVE: Traditional disease diagnosis is usually performed by experienced physicians, but misdiagnosis or missed diagnosis still exists. Exploring the relationship between changes in the corpus callosum and multiple brain infarcts requires extracting corpus callosum features from brain image data, which requires addressing three key issues. (1) automation, (2) completeness, and (3) accuracy. Residual learning can facilitate network training, Bi-Directional Convolutional LSTM (BDC-LSTM) can exploit interlayer spatial dependencies, and HDC can expand the receptive domain without losing resolution. METHODS: In this paper, we propose a segmentation method by combining BDC-LSTM and U-Net to segment the corpus callosum from multiple angles of brain images based on computed tomography (CT) and magnetic resonance imaging (MRI) in which two types of sequence, namely T2-weighted imaging as well as the Fluid Attenuated Inversion Recovery (Flair), were utilized. The two-dimensional slice sequences are segmented in the cross-sectional plane, and the segmentation results are combined to obtain the final results. Encoding, BDC- LSTM, and decoding include convolutional neural networks. The coding part uses asymmetric convolutional layers of different sizes and dilated convolutions to get multi-slice information and extend the convolutional layers' perceptual field. RESULTS: This paper uses BDC-LSTM between the encoding and decoding parts of the algorithm. On the image segmentation of the brain in multiple cerebral infarcts dataset, accuracy rates of 0.876, 0.881, 0.887, and 0.912 were attained for the intersection of union (IOU), dice similarity coefficient (DS), sensitivity (SE), and predictive positivity value (PPV). The experimental findings demonstrate that the algorithm outperforms its rivals in accuracy. CONCLUSION: This paper obtained segmentation results for three images using three models, ConvLSTM, Pyramid-LSTM, and BDC-LSTM, and compared them to verify that BDC-LSTM is the best method to perform the segmentation task for faster and more accurate detection of 3D medical images. We improve the convolutional neural network segmentation method to obtain medical images with high segmentation accuracy by solving the over-segmentation problem.

A Generative Adversarial Network technique for high-quality super-resolution reconstruction of cardiac magnetic resonance images.

PURPOSE: In this paper, we proposed a Denoising Super-resolution Generative Adversarial Network (DnSRGAN) method for high-quality super-resolution reconstruction of noisy cardiac magnetic resonance (CMR) images. METHODS: The proposed method is based on feed-forward denoising convolutional neural network (DnCNN) and SRGAN architecture. Firstly, we used a feed-forward denoising neural network to pre-denoise the CMR image to ensure that the input is a clean image. Secondly, we use the gradient penalty (GP) method to solve the problem of the discriminator gradient disappearing, which improves the convergence speed of the model. Finally, a new loss function is added to the original SRGAN loss function to monitor GAN gradient descent to achieve more stable and efficient model training, thereby providing higher perceptual quality for the super-resolution of CMR images. RESULTS: We divided the tested cardiac images into 3 groups, each group of 25 images. Then, we calculated the Peak Signal to Noise Ratio (PSNR) /Structural Similarity (SSIM) between Ground Truth (GT) and the images generated by super-resolution, used them to evaluate our model. We compared with the current widely used method: Bicubic ESRGAN and SRGAN, our method has better reconstruction quality and higher PSNR/SSIM score. CONCLUSION: We used DnCNN to denoise the CMR image, and then using the improved SRGAN to perform super-resolution reconstruction of the denoised image, we can solve the problem of high noise and artifacts that cause the cardiac image to be reconstructed incorrectly during super-resolution.

DE-MRI myocardial fibrosis segmentation and classification model based on multi-scale self-supervision and transformer.

OBJECTIVE: The segmentation and categorization of fibrotic tissue in time-lapse enhanced MRI scanning are quite challenging, and it is mainly done manually for myocardial DE-MRI images. On the other hand, DE-MRI instructions for segmenting and classifying cardiac hypertrophy are complex and prone to inaccuracy. Developing cardiac DE-MRI classification and prediction methods is crucial. METHODS: This paper introduces a self-supervised myocardial histology segmentation algorithm with multi-scale portrayal consistency to address the degree of sophistication of cardiology DE-MRI. The model retrieves multi-scale representations from multiple expanded viewpoints using a Siamese system and uses resemblance learning instruction to achieve unlabeled representations. The DE-MRI data train the network weights to generate a superior segmentation effect by accurately reflecting the exact scale information. The paper provides an end-to-end method for detecting myocardial fibrosis tissue using a Transformer as a result of the poor classification outcomes of myocardial fibrosis substance in DE-MRI. A deep learning model is created using the Pre-LN Transformer decoded simultaneously with the Multi-Scale Transformer backbone structure developed in this paper. In addition, the joint regression cost, which incorporates the CIoU Loss and the L1 Loss, is used to determine the distance between forecast blocks and labels. RESULTS: Increasing the independent evaluation and annotations position compared enhances performance compared to the segmentation method without canvas matching by 1.76%, 1.27%, 0.93%, and -1.17 mm on Dice, PPV, SEN, and HD, respectively. Based on the strongest of the three single-scale representation methodologies, the segmentation model in this study is enhanced by 0.71%, 0.79%, and 1.47%, as well as -1.49 mm on Dice, PPV, SEN, and HD, respectively. The effectiveness and reliability of the segmentation model are confirmed. Additionally, testing results show that this study's recognition system's mAP is 84.97%, which is greater than the benchmark techniques used in most other studies. The framework converges round is compressed by 18.1% compared to the DETR detection approach, and the identification rate is improved by 3.5%, proving the strategy's value. CONCLUSION: The self-supervised cardiac fibrosis segmentation method with multi-scale portrayal consistency and end-to-end myocardial histology categorization is introduced in this study. To solve the challenges of segmentation and myocardial fibrosis identification in cardiology DE-MRI, a Transformer-based detection approach is put forth. It may address the issue of the myocardial scarring material's low accuracy in segmentation and classification in DE-MRI, as well as provide clinicians with a fibrosis diagnosis that is supplementary to the conventional therapy of heart ailments.

Unsupervised domain adaptive myocardial infarction MRI classification diagnostics model based on target domain confused sample resampling.

OBJECTIVE: Inefficient circulatory system due to blockage of blood vessels leads to myocardial infarction and acute blockage. Myocardial infarction is frequently classified and diagnosed in medical treatment using MRI, yet this method is ineffective and prone to error. As a result, there are several implementation scenarios and clinical significance for employing deep learning to develop computer-aided algorithms to aid cardiologists in the routine examination of cardiac MRI. METHODS: This research uses two distinct domain classifiers to address this issue and achieve domain adaptation between the particular field and the specific part is a problem Current research on environment adaptive systems cannot effectively obtain and apply classification information for unsupervised scenes of target domain images. Insufficient information interchange between specific domains and specific domains is a problem. In this study, two different domain classifiers are used to solve this problem and achieve domain adaption. To effectively mine the source domain images for classification understanding, an unsupervised MRI classification technique for myocardial infarction called CardiacCN is proposed, which relies on adversarial instructions related to the interpolation of confusion specimens in the target domain for the conflict of confusion specimens for the target domain classification task. RESULTS: The experimental results demonstrate that the CardiacCN model in this study performs better on the six domain adaption tasks of the Sunnybrook Cardiac Dataset (SCD) dataset and increases the mean target area myocardial infarction MRI classification accuracy by approximately 1.2 percent. The classification performance of the CardiacCN model on the target domain does not vary noticeably when the temperature-controlled duration hyper-parameter rl falls in the region of 5-30. According to the experimental findings, the CardiacCN model is more resistant to the excitable rl. The CardiacCN model suggested in this research may successfully increase the accuracy of the source domain predictor for the target domain myocardial infarction clinical scanning classification in unsupervised learning, as shown by the visualization analysis infrastructure provision nurture. It is evident from the visualization assessment of embedded features that the CardiacCN model may significantly increase the source domain classifier's accuracy for the target domain's classification of myocardial infarction in clinical scans under unsupervised conditions. CONCLUSION: To address misleading specimens with the inconsistent classification of target-domain myocardial infarction medical scans, this paper introduces the CardiacCN unsupervised domain adaptive MRI classification model, which relies on adversarial learning associated with resampling target-domain confusion samples. With this technique, implicit image classification information from the target domain is fully utilized, knowledge transfer from the target domain to the specific domain is encouraged, and the classification effect of the myocardial ischemia medical scan is improved in the target domain of the unsupervised scene.

Classification of myocardial fibrosis in DE-MRI based on semi-supervised semantic segmentation and dual attention mechanism.

OBJECTIVE: It is essential to utilize cardiac delayed-enhanced magnetic resonance imaging (DE-MRI) to diagnose cardiovascular disease. By segmenting myocardium DE-MRI images, it provides critical information for the evaluation and treatment of myocardial infarction. As a consequence, it is vital to investigate the segmentation and classification technique of myocardial DE-MRI. METHODS: Firstly, an end-to-end minimally supervised and semi-supervised semantic DE-MRI myocardial fibrosis segmentation framework is proposed, which combines image classification and semantic segmentation branches based on the self-attention mechanism. Following that, a residual hole network fused with the dual attention mechanism was built, and a double attention metabolic pathway classification method for cardiac fibrosis in DE-MRI images was developed. RESULTS: By adding pixel-level labels to an extra 40 training images, the segmentation model may enhance semantic segmentation performance by 2.6 percent (from 61.2 percent to 63.8 percent). When the number of pixel-level labels is increased to 80, semi-supervised feature extraction increases by 4.7 percent when compared to weakly guided semantic segmentation. Adding an attention mechanism to the critical network DRN (Deep Residual Network) can increase the classifier's performance by a small amount. Experiments revealed that the models worked effectively. CONCLUSION: This paper investigates the segmentation and classification of cardiac fibrosis in DE-MRI data using a semi-supervised semantic segmentation and dual attention mechanism, dealing with the issue that existing segmentation algorithms have difficulty segmenting myocardial fibrosis tissue. In the future, we can consider optimizing the design of the attention module to reduce the module computation.

Automated vortex identification based on Lagrangian averaged vorticity deviation in analysis of blood flow in the atrium from phase contrast MRI.

OBJECTIVE: To present and validate a method for automated identification of the Lagrangian vortices and Eulerian vortices for analyzing flow within the right atrium (RA), from phase contrast magnetic resonance imaging (PC-MRI) data. METHODOLOGY: Our proposed algorithm characterizes the trajectory integral associated with vorticity deviation and the spatial mean of vortex rings, for the Lagrangian averaged vorticity deviation (LAVD) based identification and tracking of vortex rings within the heart chamber. For this purpose, the optical flow concept was adopted to interpolate the time frames between larger discrete frames, to minimize the error caused by constructing a continuous velocity field for the integral process of LAVD. Then the Hough transform was used to automatically extract the vortex regions of interest. The computed flow data within the RA of the participants' hearts was then used to validate the performance of our proposed method. RESULTS: In the paper, illustrations are provided for derived evolution of Euler vortices and Lagrangian vortices of a healthy subject. The visualization results have shown that our proposed method can accurately identify the Euler vortices and Lagrangian vortices, in the context of measuring the vorticity and vortex volume of the vortices within the RA chamber. Then the employment of Hough transform-based automated vortex extraction has improved the robustness and scalability of the LAVD in identifying cardiac vortices. The analytical results have demonstrated that the introduction of the Horn-Schunck optical flow can more accurately synthesize the intermediate PC-MRI to construct a continuous velocity field, compared with other interpolation methods. CONCLUSION: A novel analytical framework has been developed to accurately identify the flow vortices in the RA chamber based on Horn-Schunck optical flow and Hough transform. From the obtained analytical study results, the development and changes of dominant vortices within this cardiac chamber during the cardiac cycle can be acquired. This can provide to cardiologists a deeper understanding of the hemodynamics within the heart chambers.