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1.
Plant Cell ; 34(3): 1002-1019, 2022 03 04.
Artículo en Inglés | MEDLINE | ID: mdl-34893888

RESUMEN

The timing of flowering and the inflorescence architecture are critical for the reproductive success of tomato (Solanum lycopersicum), but the gene regulatory networks underlying these traits have not been fully explored. Here, we show that the tomato FRUITFULL-like (FUL-like) genes FUL2 and MADS-BOX PROTEIN 20 (MBP20) promote the vegetative-to-reproductive transition and repress inflorescence branching by inducing floral meristem (FM) maturation. FUL1 fulfils a less prominent role and appears to depend on FUL2 and MBP20 for its upregulation in the inflorescence- and floral meristems. MBP10, the fourth tomato FUL-like gene, has probably lost its function. The tomato FUL-like proteins cannot homodimerize in in vitro assays, but heterodimerize with various other MADS-domain proteins, potentially forming distinct complexes in the transition meristem and FM. Transcriptome analysis of the primary shoot meristems revealed various interesting downstream targets, including four repressors of cytokinin signaling that are upregulated during the floral transition in ful1 ful2 mbp10 mbp20 mutants. FUL2 and MBP20 can also bind in vitro to the upstream regions of these genes, thereby probably directly stimulating cell division in the meristem upon the transition to flowering. The control of inflorescence branching does not occur via the cytokinin oxidase/dehydrogenases (CKXs) but may be regulated by repression of transcription factors such as TOMATO MADS-box gene 3 (TM3) and APETALA 2b (AP2b).


Asunto(s)
Solanum lycopersicum , Flores/genética , Flores/metabolismo , Regulación de la Expresión Génica de las Plantas/genética , Inflorescencia/genética , Inflorescencia/metabolismo , Solanum lycopersicum/genética , Solanum lycopersicum/metabolismo , Proteínas de Dominio MADS/genética , Proteínas de Dominio MADS/metabolismo , Meristema/genética , Meristema/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
2.
Plant Biotechnol J ; 18(3): 805-813, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31483929

RESUMEN

Crossover formation during meiosis in plants is required for proper chromosome segregation and is essential for crop breeding as it allows an (optimal) combination of traits by mixing parental alleles on each chromosome. Crossover formation commences with the production of a large number of DNA double-strand breaks, of which only a few result in crossovers. A small number of genes, which drive the resolution of DNA crossover intermediate structures towards non-crossovers, have been identified in Arabidopisis thaliana. In order to explore the potential of modification of these genes in interspecific hybrids between crops and their wild relatives towards increased production of crossovers, we have used CRISPR/Cas9-mutagenesis in an interspecific tomato hybrid to knockout RecQ4. A biallelic recq4 mutant was obtained in the F1 hybrid of Solanum lycopersicum and S. pimpinellifolium. Compared with the wild-type F1 hybrid, the F1 recq4 mutant was shown to have a significant increase in crossovers: a 1.53-fold increase when directly observing ring bivalents in male meiocytes microscopically and a 1.8-fold extension of the genetic map when measured by analysing SNP markers in the progeny (F2) plants. This is one of the first demonstrations of increasing crossover frequency in interspecific hybrids by manipulating genes in crossover intermediate resolution pathways and the first to do so by directed mutagenesis. SIGNIFICANCE STATEMENT: Increasing crossover frequency during meiosis can speed up or simplify crop breeding that relies on meiotic crossovers to introduce favourable alleles controlling important traits from wild relatives into crops. Here we show for the first time that knocking out an inhibitor of crossovers in an interspecific hybrid between tomato and its relative wild species using CRISPR/Cas9-mutagenesis results in increased recombination between the two genomes.


Asunto(s)
Sistemas CRISPR-Cas , Intercambio Genético , RecQ Helicasas/genética , Solanum lycopersicum/genética , Técnicas de Inactivación de Genes , Hibridación Genética , Meiosis , Fitomejoramiento
3.
Plant Biotechnol J ; 13(9): 1221-3, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26032006

RESUMEN

In recent years, different Bacillus thuringiensis (Bt) toxin-encoding genes have been combined or 'stacked' in genetically modified (GM) crops. Synergism between Bt proteins may occur and thereby increase the impact of the stacked GM event on nontarget invertebrates compared to plants expressing a single Bt gene. On the basis of bioassay data available for Bt toxins alone or in combination, we argue that the current knowledge of Bt protein interactions is of limited relevance in environmental risk assessment (ERA).


Asunto(s)
Bacillus thuringiensis/genética , Proteínas Bacterianas/genética , Productos Agrícolas/genética , Endotoxinas/genética , Proteínas Hemolisinas/genética , Plantas Modificadas Genéticamente/genética , Animales , Toxinas de Bacillus thuringiensis , Proteínas Bacterianas/metabolismo , Conservación de los Recursos Naturales , Endotoxinas/metabolismo , Ambiente , Proteínas Hemolisinas/metabolismo , Invertebrados/metabolismo , Medición de Riesgo
4.
Plant Biotechnol J ; 13(2): 259-68, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25283700

RESUMEN

Tomato is one of the most cultivated vegetables in the world and an important ingredient of the human diet. Tomato breeders and growers face a continuous challenge of combining high quantity (production volume) with high quality (appearance, taste and perception for the consumers, processing quality for the processing industry). To improve the quality of tomato, it is important to understand the regulation of fruit development and of fruit cellular structure, which is in part determined by the sizes and numbers of cells within a tissue. The role of the cell cycle therein is poorly understood. Plant cyclin-dependent kinases (CDKs) are homologues of yeast cdc2, an important cell cycle regulator conserved throughout all eukaryotes. CDKA1 is constitutively expressed during the cell cycle and has dual functions in S- and M-phase progression. We have produced transgenic tomato plants with increased expression of CDKA1 under the control of the fruit-specific TPRP promoter, which despite a reduced number of seeds and diminished amount of jelly, developed fruits with weight and shape comparable to that of wild-type fruits. However, the phenotypic changes with regard to the pericarp thickness and placenta area were remarkable. Fruits of tomato plants with the highest expression of CDKA1 had larger septa and columella (placenta), compared with wild-type fruits. Our data demonstrate the possibility of manipulating the ratio between cell division and expansion by changing the expression of a key cell cycle regulator and probably its activity with substantial effects on structural traits of the harvested fruit.


Asunto(s)
Tamaño de la Célula , Frutas/citología , Proteínas de Plantas/metabolismo , Solanum lycopersicum/citología , Recuento de Células , División Celular , Genes de Plantas , Solanum lycopersicum/genética , Especificidad de Órganos/genética , Fenotipo , Plantas Modificadas Genéticamente , Ploidias , Reacción en Cadena en Tiempo Real de la Polimerasa
5.
Plant Cell ; 24(11): 4437-51, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23136376

RESUMEN

Tomato (Solanum lycopersicum) contains two close homologs of the Arabidopsis thaliana MADS domain transcription factor FRUITFULL (FUL), FUL1 (previously called TDR4) and FUL2 (previously MBP7). Both proteins interact with the ripening regulator RIPENING INHIBITOR (RIN) and are expressed during fruit ripening. To elucidate their function in tomato, we characterized single and double FUL1 and FUL2 knockdown lines. Whereas the single lines only showed very mild alterations in fruit pigmentation, the double silenced lines exhibited an orange-ripe fruit phenotype due to highly reduced lycopene levels, suggesting that FUL1 and FUL2 have a redundant function in fruit ripening. More detailed analyses of the phenotype, transcriptome, and metabolome of the fruits silenced for both FUL1 and FUL2 suggest that the genes are involved in cell wall modification, the production of cuticle components and volatiles, and glutamic acid (Glu) accumulation. Glu is responsible for the characteristic umami taste of the present-day cultivated tomato fruit. In contrast with previously identified ripening regulators, FUL1 and FUL2 do not regulate ethylene biosynthesis but influence ripening in an ethylene-independent manner. Our data combined with those of others suggest that FUL1/2 and TOMATO AGAMOUS-LIKE1 regulate different subsets of the known RIN targets, probably in a protein complex with the latter.


Asunto(s)
Frutas/genética , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/genética , Solanum lycopersicum/genética , Carotenoides/metabolismo , Regulación hacia Abajo , Etilenos/metabolismo , Frutas/crecimiento & desarrollo , Frutas/metabolismo , Perfilación de la Expresión Génica , Ácido Glutámico/metabolismo , Solanum lycopersicum/crecimiento & desarrollo , Solanum lycopersicum/metabolismo , Proteínas de Dominio MADS/genética , Proteínas de Dominio MADS/metabolismo , Metaboloma , Metabolómica , Modelos Biológicos , Mutación , Aceites Volátiles/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , Fenotipo , Reguladores del Crecimiento de las Plantas/metabolismo , Proteínas de Plantas/metabolismo , Plantas Modificadas Genéticamente , Transcriptoma , Regulación hacia Arriba
6.
Physiol Plant ; 154(1): 114-27, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25220433

RESUMEN

Light affects plant growth through assimilate availability and signals regulating development. The effects of light on growth of tomato fruit were studied using cuvettes with light-emitting diodes providing white, red or blue light to individual tomato trusses for different periods during daytime. Hypotheses tested were as follows: (1) light-grown fruits have stronger assimilate sinks than dark-grown fruits, and (2) responses depend on light treatment provided, and fruit development stage. Seven light treatments [dark, 12-h white, 24-h white, 24-h red and 24-h blue light, dark in the first 24 days after anthesis (DAA) followed by 24-h white light until breaker stage, and its reverse] were applied. Observations were made between anthesis and breaker stage at fruit, cell and gene levels. Fruit size and carbohydrate content did not respond to light treatments while cell division was strongly stimulated at the expense of cell expansion by light. The effects of light on cell number and volume were independent of the combination of light color and intensity. Increased cell division and decreased cell volume when fruits were grown in the presence of light were not clearly corroborated by the expression pattern of promoters and inhibitors of cell division and expansion analyzed in this study, implying a strong effect of posttranscriptional regulation. Results suggest the existence of a complex homeostatic regulatory system for fruit growth in which reduced cell division is compensated by enhanced cell expansion.


Asunto(s)
Frutas/efectos de la radiación , Solanum lycopersicum/efectos de la radiación , Metabolismo de los Hidratos de Carbono/efectos de la radiación , División Celular/efectos de la radiación , Aumento de la Célula/efectos de la radiación , Expresión Génica/efectos de la radiación , Luz
7.
Physiol Plant ; 153(3): 403-18, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24957883

RESUMEN

Fruit phenotype is a resultant of inherent genetic potential in interaction with impact of environment experienced during crop and fruit growth. The aim of this study was to analyze the genetic and physiological basis for the difference in fruit size between a small ('Brioso') and intermediate ('Cappricia') sized tomato cultivar exposed to different fruit temperatures. It was hypothesized that fruit heating enhances expression of cell cycle and expansion genes, rates of carbon import, cell division and expansion, and shortens growth duration, whereas increase in cell number intensifies competition for assimilates among cells. Unlike previous studies in which whole-plant and fruit responses cannot be separated, we investigated the temperature response by varying fruit temperature using climate-controlled cuvettes, while keeping plant temperature the same. Fruit phenotype was assessed at different levels of aggregation (whole fruit, cell and gene) between anthesis and breaker stage. We showed that: (1) final fruit fresh weight was larger in 'Cappricia' owing to more and larger pericarp cells, (2) heated fruits were smaller because their mesocarp cells were smaller than those of control fruits and (3) no significant differences in pericarp carbohydrate concentration were detected between heated and control fruits nor between cultivars at breaker stage. At the gene level, expression of cell division promoters (CDKB2, CycA1 and E2Fe-like) was higher while that of the inhibitory fw2.2 was lower in 'Cappricia'. Fruit heating increased expression of fw2.2 and three cell division promoters (CDKB1, CDKB2 and CycA1). Expression of cell expansion genes did not corroborate cell size observations.


Asunto(s)
Frutas/crecimiento & desarrollo , Regulación de la Expresión Génica de las Plantas , Solanum lycopersicum/crecimiento & desarrollo , Ciclo Celular , División Celular , Proliferación Celular , Frutas/genética , Solanum lycopersicum/genética , Análisis Multinivel , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Temperatura
8.
BMC Plant Biol ; 14: 157, 2014 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-24903607

RESUMEN

BACKGROUND: TCP proteins are plant-specific transcription factors, which are known to have a wide range of functions in different plant species such as in leaf development, flower symmetry, shoot branching, and senescence. Only a small number of TCP genes has been characterised from tomato (Solanum lycopersicum). Here we report several functional features of the members of the entire family present in the tomato genome. RESULTS: We have identified 30 Solanum lycopersicum SlTCP genes, most of which have not been described before. Phylogenetic analysis clearly distinguishes two homology classes of the SlTCP transcription factor family - class I and class II. Class II differentiates in two subclasses, the CIN-TCP subclass and the CYC/TB1 subclass, involved in leaf development and axillary shoots formation, respectively. The expression patterns of all members were determined by quantitative PCR. Several SlTCP genes, like SlTCP12, SlTCP15 and SlTCP18 are preferentially expressed in the tomato fruit, suggesting a role during fruit development or ripening. These genes are regulated by RIN (RIPENING INHIBITOR), CNR (COLORLESS NON-RIPENING) and SlAP2a (APETALA2a) proteins, which are transcription factors with key roles in ripening. With a yeast one-hybrid assay we demonstrated that RIN binds the promoter fragments of SlTCP12, SlTCP15 and SlTCP18, and that CNR binds the SlTCP18 promoter. This data strongly suggests that these class I SlTCP proteins are involved in ripening. Furthermore, we demonstrate that SlTCPs bind the promoter fragments of members of their own family, indicating that they regulate each other. Additional yeast one-hybrid studies performed with Arabidopsis transcription factors revealed binding of the promoter fragments by proteins involved in the ethylene signal transduction pathway, contributing to the idea that these SlTCP genes are involved in the ripening process. Yeast two-hybrid data shows that SlTCP proteins can form homo and heterodimers, suggesting that they act together in order to form functional protein complexes and together regulate developmental processes in tomato. CONCLUSIONS: The comprehensive analysis we performed, like phylogenetic analysis, expression studies, identification of the upstream regulators and the dimerization specificity of the tomato TCP transcription factor family provides the basis for functional studies to reveal the role of this family in tomato development.


Asunto(s)
Clonación Molecular , Familia de Multigenes , Proteínas de Plantas/genética , Solanum lycopersicum/genética , Factores de Transcripción/genética , Secuencia de Aminoácidos , Proteínas de Arabidopsis/metabolismo , Cromosomas de las Plantas/genética , Frutas/genética , Frutas/crecimiento & desarrollo , Regulación de la Expresión Génica de las Plantas , Redes Reguladoras de Genes , Genes de Plantas , Genes Reguladores , Solanum lycopersicum/crecimiento & desarrollo , Datos de Secuencia Molecular , Mutación/genética , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Regiones Promotoras Genéticas , Unión Proteica , Estructura Terciaria de Proteína , Alineación de Secuencia , Factores de Transcripción/química , Factores de Transcripción/metabolismo , Técnicas del Sistema de Dos Híbridos
9.
J Exp Bot ; 65(16): 4527-41, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-25080453

RESUMEN

Fleshy fruits have evolved to be attractive to frugivores in order to enhance seed dispersal, and have become an indispensable part of the human diet. Here we review the recent advances in the understanding of transcriptional regulation of fleshy fruit development and ripening with a focus on tomato. While aspects of fruit development are probably conserved throughout the angiosperms, including the model plant Arabidopsis thaliana, it is shown that the likely orthologues of Arabidopsis genes have distinct functions in fleshy fruits. The model for the study of fleshy fruit development is tomato, because of the availability of single gene mutants and transgenic knock-down lines. In other species, our knowledge is often incomplete or absent. Tomato fruit size and shape are co-determined by transcription factors acting during formation of the ovary. Other transcription factors play a role in fruit chloroplast formation, and upon ripening impact quality aspects such as secondary metabolite content. In tomato, the transcription factors NON-RIPENING (NOR), COLORLESS NON-RIPENING (CNR), and RIPENING INHIBITOR (MADS-RIN) in concert with ethylene signalling regulate ripening, possibly in response to a developmental switch. Additional components include TOMATO AGAMOUS-LIKE1 (TAGL1), APETALA2a (AP2a), and FRUITFULL (FUL1 and FUL2). The links between this highly connected regulatory network and downstream effectors modulating colour, texture, and flavour are still relatively poorly understood. Intertwined with this network is post-transcriptional regulation by fruit-expressed microRNAs targeting several of these transcription factors. This important developmental process is also governed by changes in DNA methylation levels and possibly chromatin remodelling.


Asunto(s)
Frutas/crecimiento & desarrollo , Frutas/genética , Solanum lycopersicum/crecimiento & desarrollo , Solanum lycopersicum/genética , Transcripción Genética , Frutas/efectos de los fármacos , Frutas/metabolismo , Solanum lycopersicum/efectos de los fármacos , Pigmentación/efectos de los fármacos , Pigmentación/genética , Reguladores del Crecimiento de las Plantas/farmacología , Factores de Transcripción/metabolismo , Transcripción Genética/efectos de los fármacos
10.
Plant Cell ; 23(3): 923-41, 2011 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-21398570

RESUMEN

Fruit ripening in tomato (Solanum lycopersicum) requires the coordination of both developmental cues as well as the plant hormone ethylene. Although the role of ethylene in mediating climacteric ripening has been established, knowledge regarding the developmental regulators that modulate the involvement of ethylene in tomato fruit ripening is still lacking. Here, we show that the tomato APETALA2a (AP2a) transcription factor regulates fruit ripening via regulation of ethylene biosynthesis and signaling. RNA interference (RNAi)-mediated repression of AP2a resulted in alterations in fruit shape, orange ripe fruits, and altered carotenoid accumulation. Microarray expression analyses of the ripe AP2 RNAi fruits showed altered expression of genes involved in various metabolic pathways, such as the phenylpropanoid and carotenoid pathways, as well as in hormone synthesis and perception. Genes involved in chromoplast differentiation and other ripening-associated processes were also differentially expressed, but softening and ethylene biosynthesis occurred in the transgenic plants. Ripening regulators RIPENING-INHIBITOR, NON-RIPENING, and COLORLESS NON-RIPENING (CNR) function upstream of AP2a and positively regulate its expression. In the pericarp of AP2 RNAi fruits, mRNA levels of CNR were elevated, indicating that AP2a and CNR are part of a negative feedback loop in the regulation of ripening. Moreover, we demonstrated that CNR binds to the promoter of AP2a in vitro.


Asunto(s)
Etilenos/biosíntesis , Frutas/crecimiento & desarrollo , Perfilación de la Expresión Génica , Proteínas de Plantas/metabolismo , Solanum lycopersicum/genética , Factores de Transcripción/metabolismo , Carotenoides/biosíntesis , Frutas/genética , Frutas/metabolismo , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Solanum lycopersicum/crecimiento & desarrollo , Solanum lycopersicum/metabolismo , Filogenia , Reguladores del Crecimiento de las Plantas/biosíntesis , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/crecimiento & desarrollo , Plantas Modificadas Genéticamente/metabolismo , Plastidios/genética , Plastidios/metabolismo , Regiones Promotoras Genéticas , Interferencia de ARN , Elementos Reguladores de la Transcripción , Factores de Transcripción/genética
11.
J Invertebr Pathol ; 115: 99-101, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24286660

RESUMEN

Cry9Aa, produced by Bacillus thuringiensis is reported to be not active against Spodoptera exigua (beet armyworm). In this study we have cloned a new cry9Aa5 gene encoding a protoxin with increased activity against S. exigua as compared to Cry9Aa1. When aligned to Cry9Aa1, four amino acid substitutions in domain I and one substitution in the C-terminal protein extension of Cry9Aa5 were identified. Toxicity of Cry9Aa5, produced in recombinant Escherichia coli was assessed and compared to the activity of Cry9Aa1, produced under the same conditions.


Asunto(s)
Proteínas Bacterianas/genética , Endotoxinas/genética , Proteínas Hemolisinas/genética , Control Biológico de Vectores/métodos , Spodoptera/microbiología , Secuencia de Aminoácidos , Animales , Bacillus thuringiensis/genética , Toxinas de Bacillus thuringiensis , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
12.
Sci Rep ; 14(1): 4508, 2024 02 24.
Artículo en Inglés | MEDLINE | ID: mdl-38402312

RESUMEN

Cas12a is a promising addition to the CRISPR toolbox, offering versatility due to its TTTV-protospacer adjacent motif (PAM) and the fact that it induces double-stranded breaks (DSBs) with single-stranded overhangs. We characterized Cas12a-mediated genome editing in tomato using high-throughput amplicon sequencing on protoplasts. Of the three tested variants, Lachnospiraceae (Lb) Cas12a was the most efficient. Additionally, we developed an easy and effective Golden-Gate-based system for crRNA cloning. We compared LbCas12a to SpCas9 by investigating on-target efficacy and specificity at 35 overlapping target sites and 57 (LbCas12a) or 100 (SpCas9) predicted off-target sites. We found LbCas12a an efficient, robust addition to SpCas9, with similar overall though target-dependent efficiencies. LbCas12a induced more and larger deletions than SpCas9, which can be advantageous for specific genome editing applications. Off-target activity for LbCas12a was found at 10 out of 57 investigated sites. One or two mismatches were present distal from the PAM in all cases. We conclude that Cas12a-mediated genome editing is generally precise as long as such off-target sites can be avoided. In conclusion, we have determined the mutation pattern and efficacy of Cas12a-mediated CRISPR mutagenesis in tomato and developed a cloning system for the routine application of Cas12a for tomato genome editing.


Asunto(s)
Sistemas CRISPR-Cas , Solanum lycopersicum , Solanum lycopersicum/genética , Mutagénesis , Edición Génica , Mutación
13.
J Exp Bot ; 64(7): 1863-78, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23487304

RESUMEN

MicroRNAs (miRNAs) play important roles in plant development through regulation of gene expression by mRNA degradation or translational inhibition. Despite the fact that tomato (Solanum lycopersicum) is the model system for studying fleshy fruit development and ripening, only a few experimentally proven miRNA targets are known, and the role of miRNA action in these processes remains largely unknown. Here, by using parallel analysis of RNA ends (PARE) for global identification of miRNA targets and comparing four different stages of tomato fruit development, a total of 119 target genes of miRNAs were identified. Of these, 106 appeared to be new targets. A large part of the identified targets (56) coded for transcription factors. Auxin response factors, as well as two known ripening regulators, colorless non-ripening (CNR) and APETALA2a (SlAP2a), with developmentally regulated degradation patterns were identified. The levels of the intact messenger of both CNR and AP2a are actively modulated during ripening, by miR156/157 and miR172, respectively. Additionally, two TAS3-mRNA loci were identified as targets of miR390. Other targets such as Argonaute 1 (AGO1), shown to be involved in miRNA biogenesis in other plant species, were identified, which suggests a feedback loop regulation of this process. In this study, it is shown that miRNA-guided cleavage of mRNAs is likely to play an important role in tomato fruit development and ripening.


Asunto(s)
Frutas/crecimiento & desarrollo , Frutas/metabolismo , MicroARNs/genética , Solanum lycopersicum/crecimiento & desarrollo , Solanum lycopersicum/genética , Solanum lycopersicum/metabolismo , Frutas/genética , Regulación de la Expresión Génica de las Plantas , Ensayos Analíticos de Alto Rendimiento , MicroARNs/fisiología , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
14.
Front Genome Ed ; 5: 1196763, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37346168

RESUMEN

CRISPR/Cas9 technology has the potential to significantly enhance plant breeding. To determine the specificity and the mutagenic spectrum of SpCas9 in tomato, we designed 89 g(uide) RNAs targeting genes of the tomato MYB transcription factor family with varying predicted specificities. Plasmids encoding sgRNAs and Cas9 were introduced into tomato protoplasts, and target sites as well as 224 predicted off-target sites were screened for the occurrence of mutations using amplicon sequencing. Algorithms for the prediction of efficacy of the sgRNAs had little predictive power in this system. The analysis of mutations suggested predictable identity of single base insertions. Off-target mutations were found for 13 out of 89 sgRNAs and only occurred at positions with one or two mismatches (at 14 and 3 sites, respectively). We found that PAM-proximal mismatches do not preclude low frequency off-target mutations. Off-target mutations were not found at all 138 positions that had three or four mismatches. We compared off-target mutation frequencies obtained with plasmid encoding sgRNAs and Cas9 with those induced by ribonucleoprotein (RNP) transfections. The use of RNPs led to a significant decrease in relative off-target frequencies at 6 out of 17, no significant difference at 9, and an increase at 2 sites. Additionally, we show that off-target sequences with insertions or deletions relative to the sgRNA may be mutated, and should be considered during sgRNA design. Altogether, our data help sgRNA design by providing insight into the Cas9-induced double-strand break repair outcomes and the occurrence of off-target mutations.

15.
New Phytol ; 196(2): 535-547, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22924438

RESUMEN

Strigolactones are plant hormones that regulate both above- and belowground plant architecture. Strigolactones were initially identified as rhizosphere signaling molecules. In the present work, the tomato (Solanum lycopersicum) CAROTENOID CLEAVAGE DIOXYGENASE 8 (SlCCD8) was cloned and its role in rhizosphere signaling and plant physiology assessed by generating knock-down lines. Transgenic SlCCD8 plants were generated by RNAi-mediated silencing. Lines with different levels of strigolactone reduction--confirmed by UPLC-MS/MS--were selected and their phenotypes investigated. Lines exhibiting reduced SlCCD8 levels displayed increased shoot branching, reduced plant height, increased number of nodes and excessive adventitious root development. In addition, these lines exhibited reproductive phenotypes such as smaller flowers, fruits, as well as fewer and smaller seeds per fruit. Furthermore, we show that strigolactone loading to the xylem sap is possibly restricted to orobanchol. Infestation by Phelipanche ramosa was reduced by 90% in lines with a relatively mild reduction in strigolactone biosynthesis and secretion while arbuscular mycorrhizal symbiosis, apical dominance and fruit yield were only mildly affected. This demonstrates that reduction of strigolactone biosynthesis could be a suitable tool in parasitic weed management. Furthermore, our results suggest that strigolactones are involved in even more physiological processes than so far assumed.


Asunto(s)
Lactonas/metabolismo , Proteínas de Plantas/metabolismo , Rizosfera , Transducción de Señal , Solanum lycopersicum/anatomía & histología , Solanum lycopersicum/enzimología , Secuencia de Aminoácidos , Cromatografía Liquida , Clonación Molecular , Flores/anatomía & histología , Frutas/anatomía & histología , Regulación de la Expresión Génica de las Plantas , Técnicas de Silenciamiento del Gen , Lactonas/química , Solanum lycopersicum/genética , Solanum lycopersicum/crecimiento & desarrollo , Espectrometría de Masas , Modelos Biológicos , Datos de Secuencia Molecular , Exudados de Plantas/metabolismo , Proteínas de Plantas/química , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/microbiología , Brotes de la Planta/anatomía & histología , Brotes de la Planta/enzimología , Interferencia de ARN , ARN Mensajero/genética , ARN Mensajero/metabolismo , Reproducción , Semillas/anatomía & histología
16.
J Exp Bot ; 63(7): 2605-17, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22282536

RESUMEN

Growth of tomato fruits is determined by cell division and cell expansion, which are tightly controlled by factors that drive the core cell cycle. The cyclin-dependent kinases (CDKs) and their interacting partners, the cyclins, play a key role in the progression of the cell cycle. In this study the role of CDKA1, CDKB1, and CDKB2 in fruit development was characterized by fruit-specific overexpression and down-regulation. CDKA1 is expressed in the pericarp throughout development, but is strongly up-regulated in the outer pericarp cell layers at the end of the growth period, when CDKB gene expression has ceased. Overexpression of the CDKB genes at later stages of development and the down-regulation of CDKA1 result in a very similar fruit phenotype, showing a reduction in the number of cell layers in the pericarp and alterations in the desiccation of the fruits. Expression studies revealed that CDKA1 is down-regulated by the expression of CDKB1/2 in CDKB1 and CDKB2 overexpression mutants, suggesting opposite roles for these types of CDK proteins in tomato pericarp development.


Asunto(s)
Frutas/crecimiento & desarrollo , Regulación del Desarrollo de la Expresión Génica , Solanum lycopersicum/enzimología , Quinasas Ciclina-Dependientes/genética , Quinasas Ciclina-Dependientes/metabolismo , Frutas/enzimología , Frutas/genética , Regulación de la Expresión Génica de las Plantas , Genes cdc , Solanum lycopersicum/genética , Solanum lycopersicum/crecimiento & desarrollo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
17.
ACS Agric Sci Technol ; 2(2): 192-201, 2022 Apr 18.
Artículo en Inglés | MEDLINE | ID: mdl-35548699

RESUMEN

CRISPR-Cas-based genome editing allows for precise and targeted genetic modification of plants. Nevertheless, unintended off-target edits can arise that might confer risks when present in gene-edited food crops. Through an extensive literature review we gathered information on CRISPR-Cas off-target edits in plants. Most observed off-target changes were small insertions or deletions (1-22 bp) or nucleotide substitutions, and large deletions (>100 bp) were rare. One study detected the insertion of vector-derived DNA sequences, which is important considering the risk assessment of gene-edited plants. Off-target sites had few mismatches (1-3 nt) with the target sequence and were mainly located in protein-coding regions, often in target gene homologues. Off-targets edits were predominantly detected via biased analysis of predicted off-target sites instead of unbiased genome-wide analysis. CRISPR-Cas-edited plants showed lower off-target mutation frequencies than conventionally bred plants. This Review can aid discussions on the relevance of evaluating off-target modifications for risk assessment of CRISPR-Cas-edited plants.

18.
J Invertebr Pathol ; 108(1): 56-8, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-21723871

RESUMEN

Cry15Aa protein, produced by Bacillus thuringiensis serovar thompsoni HD542, in a crystal together with a 40 kDa accompanying protein, is one of a small group of non-typical, less well-studied members of the Cry family of insecticidal proteins, and may provide an alternative for the more commonly used Cry proteins in insect pest management. In this study we examined the role of the C-terminal part of Cry15Aa and of the 40 kDa protein in crystal formation in recombinant B. thuringiensis. The contribution of the 40 kDa protein and of the Cry15Aa carboxy-terminal sequence for crystal formation, crystal solubilization, and insecticidal properties was assessed. No significant differences in toxicity against Cydia pomonella, before or after in vitro solubilization of crystal-spore preparations, were found. Although the 40 kDa protein significantly contributes to in vitro solubility and in vivo crystal formation of Cry15Aa, no direct evidence for involvement of the 40 kDa protein in toxicity of Cry15Aa was found.


Asunto(s)
Proteínas Bacterianas/química , Endotoxinas/química , Proteínas Hemolisinas/química , Insecticidas/química , Animales , Toxinas de Bacillus thuringiensis , Proteínas Bacterianas/fisiología , Proteínas Bacterianas/ultraestructura , Cristalización , Cristalografía por Rayos X , Endotoxinas/fisiología , Proteínas Hemolisinas/fisiología , Proteínas Hemolisinas/ultraestructura , Mariposas Nocturnas , Control Biológico de Vectores , Solubilidad
19.
Trends Plant Sci ; 25(3): 291-301, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31926765

RESUMEN

The study of transcriptional regulation of tomato ripening has been led by spontaneous mutations in transcription factor (TF) genes that completely inhibit normal ripening, suggesting that they are 'master regulators'. Studies using CRISPR/Cas9 mutagenesis to produce knockouts of the underlying genes indicate a different picture, suggesting that the regulation is more robust than previously thought. This requires us to revisit our model of the regulation of ripening and replace it with one involving a network of partially redundant components. At the same time, the fast rise of CRISPR/Cas mutagenesis, resulting in unexpectedly weak phenotypes, compared with knockdown technology, suggests that compensatory mechanisms may obscure protein functions. This emphasises the need for assessment of these mechanisms in plants and for the careful design of mutagenesis experiments.


Asunto(s)
Solanum lycopersicum , Frutas , Regulación de la Expresión Génica de las Plantas , Fenotipo , Proteínas de Plantas
20.
Plant Sci ; 294: 110436, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32234221

RESUMEN

Tomato fruit ripening is regulated by transcription factors (TFs), their downstream effector genes, and the ethylene biosynthesis and signalling pathway. Spontaneous non-ripening mutants ripening inhibitor (rin), non-ripening (nor) and Colorless non-ripening (Cnr) correspond with mutations in or near the TF-encoding genes MADS-RIN, NAC-NOR and SPL-CNR, respectively. Here, we produced heterozygous single and double mutants of rin, nor and Cnr and evaluated their functions and genetic interactions in the same genetic background. We showed how these mutations interact at the level of phenotype, individual effector gene expression, and sensory and quality aspects, in a dose-dependent manner. Rin and nor have broadly similar quantitative effects on all aspects, demonstrating their additivity in fruit ripening regulation. We also found that the Cnr allele is epistatic to rin and nor and that its pleiotropic effects on fruit size and volatile production, in contrast to the well-known dominant effect on ripening, are incompletely dominant, or recessive.


Asunto(s)
Frutas/metabolismo , Solanum lycopersicum/metabolismo , Sitios de Unión , Frutas/genética , Regulación de la Expresión Génica de las Plantas/genética , Regulación de la Expresión Génica de las Plantas/fisiología , Solanum lycopersicum/genética , Mutación/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Regiones Promotoras Genéticas/genética , Regiones Promotoras Genéticas/fisiología , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
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