The Chromosome Number and rDNA Loci Evolution in Onobrychis (Fabaceae).

The evolution of chromosome number and ribosomal DNA (rDNA) loci number and localisation were studied in Onobrychis Mill. Diploid and tetraploid species, as well as two basic chromosome numbers, x = 7 and x = 8, were observed among analysed taxa. The chromosomal distribution of rDNA loci was presented here for the first time using fluorescence in situ hybridisation (FISH) with 5S and 35S rDNA probes. Onobrychis species showed a high polymorphism in the number and localisation of rDNA loci among diploids, whereas the rDNA loci pattern was very similar in polyploids. Phylogenetic relationships among the species, inferred from nrITS sequences, were used as a framework to reconstruct the patterns of basic chromosome number and rDNA loci evolution. Analysis of the evolution of the basic chromosome numbers allowed the inference of x = 8 as the ancestral number and the descending dysploidy and polyploidisation as the major mechanisms of the chromosome number evolution. Analyses of chromosomal patterns of rRNA gene loci in a phylogenetic context resulted in the reconstruction of one locus of 5S rDNA and one locus of 35S rDNA in the interstitial chromosomal position as the ancestral state in this genus.

Presence and distributions of POPS in soil, atmospheric deposition, and bioindicator samples in an industrial-agricultural area in Turkey.

In this study, polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), and organochlorine pesticides (OCPs) were detected in the soil, lichen pine needle, and total deposition samples in the Meriç-Ergene Basin, which is one of the most important regions in terms of industrial and agricultural activities in Turkey. POP concentrations were measured in 192 samples selected to represent four seasons over a 1-year period across four different regions: an intensive industrial area, an industrial + residential area, an agricultural area, and a background area. Total PAH concentrations are found in the range of 69.6-887.6 ng/g, 74.6-1277.7 ng/g, 113.4-588.9 ng/g, and 0.00-937.8 ng/m2-day; total PCB concentrations are 9.98-62.9 ng/g, 6.8-68.1 ng/g, 11.3-32.7 ng/g, and 0.00-144.4 ng/m2-day; total OCPs concentrations are 5.9-83.2 ng/g, 7.3-85.6 ng/g, 9.9-97.1 ng/g, and 0.00-137.6 ng/m2-day respectively for soil, lichen, pine needles, and bulk samples. The data were evaluated according to pollutant groups and spatial and temporal changes. The highest PAH and PCB values were detected in lichen samples from industrial areas. The highest OCP values were detected for total deposition and soil samples and in the agricultural area. The results showed that two- to three-ring PAHs, hepta-PCBs, and cyclodienes were the most widespread pollutant groups. Statistical analyses were performed to evaluate the accumulation and indication properties of the matrices in the study for 0.05 significance level. The pollutant group in which matrices are most similar is PAHs. Total deposition samples showed the most different pattern in terms of indications, especially for PCBs. For OCP results, the concentration values obtained in soil samples were different from all other matrices. It was determined that the indication properties of the matrices identified as pollutant indicators differ markedly from the pollutant type, and this difference is at the lowest level for PAH pollutants. Graphical abstract ᅟ.

High-antibacterial activity of Urtica spp. seed extracts on food and plant pathogenic bacteria.

The aim of this study was to comparatively evaluate antibacterial activities of methanol (MetOH) and aqueous (dw) leaf (L), root (R) and seed (S) extracts of Urtica dioica L. (Ud; stinging nettle) and Urtica pilulifera L. (Up; Roman nettle) on both food- and plant-borne pathogens, with total phenolic contents and DPPH radical scavenging activities (DRSA). MetOH extracts of leaves and roots of U. dioica had the highest DRSA. Extracts with high antibacterial activity were in the order Up-LMetOH (13/16) > Ud-SMetOH (11/16) > Up-SMetOH (9/16). Results obtained with Up-SMetOH against food spoiling Bacillus pumilus, Shigella spp. and Enterococcus gallinarum with minimum inhibitory concentrations (MICs) in 128-1024 µg/ml range seem to be promising. Up-SMetOH also exerted strong inhibition against Clavibacter michiganensis with a considerably low MIC (32 µg/ml). Ud-SMetOH and Up-LMetOH were also effective against C. michiganensis (MIC = 256 and 1024 µg/ml, respectively). Ud-SMetOH and Ud-RMetOH had also antimicrobial activity against Xanthomonas vesicatoria (MIC = 512 and 1024 µg/ml, respectively). Results presented here demonstrate high-antibacterial activity of U. pilulifera extracts and U. dioica seed extract against phytopathogens for the first time, and provide the most comprehensive data on the antibacterial activity screening of U. pilulifera against food-borne pathogens. Considering limitations in plant disease control, antibacterial activities of these extracts would be of agricultural importance.

Production of secondary metabolites using tissue culture-based biotechnological applications.

Plants are the sources of many bioactive secondary metabolites which are present in plant organs including leaves, stems, roots, and flowers. Although they provide advantages to the plants in many cases, they are not necessary for metabolisms related to growth, development, and reproduction. They are specific to plant species and are precursor substances, which can be modified for generations of various compounds in different plant species. Secondary metabolites are used in many industries, including dye, food processing and cosmetic industries, and in agricultural control as well as being used as pharmaceutical raw materials by humans. For this reason, the demand is high; therefore, they are needed to be obtained in large volumes and the large productions can be achieved using biotechnological methods in addition to production, being done with classical methods. For this, plant biotechnology can be put in action through using different methods. The most important of these methods include tissue culture and gene transfer. The genetically modified plants are agriculturally more productive and are commercially more effective and are valuable tools for industrial and medical purposes as well as being the sources of many secondary metabolites of therapeutic importance. With plant tissue culture applications, which are also the first step in obtaining transgenic plants with having desirable characteristics, it is possible to produce specific secondary metabolites in large-scale through using whole plants or using specific tissues of these plants in laboratory conditions. Currently, many studies are going on this subject, and some of them receiving attention are found to be taken place in plant biotechnology and having promising applications. In this work, particularly benefits of secondary metabolites, and their productions through tissue culture-based biotechnological applications are discussed using literature with presence of current studies.

Phylogeny and taxonomic synopsis of PoasubgenusPseudopoa (including Eremopoa and Lindbergella) (Poaceae, Poeae, Poinae).

Eremopoa is a small genus of annual grasses distributed from Egypt to western China. Phylogenetic analyses of plastid and nuclear ribosomal DNA show that Eremopoa species, together with the monotypic genus Lindbergella and a single species of Poa (P.speluncarum), are nested within the genus Poa, in a clade that we accept as Poasubg.Pseudopoa. Here we accept seven species, four subspecies and four varieties in Poasubg.Pseudopoa. Five new combinations are made: Poaattalica, P.diaphora var. alpina, P.diaphora var. songarica, P.nephelochloides and P.persicasubsp.multiradiata; P.millii is proposed as a replacement name for E.capillaris; and Poa sections Lindbergella and Speluncarae are proposed. We provide a diagnosis for Poasubg.Pseudopoa, synonymy for and a key to the taxa. Eight lectotypes are designated: Eragrostisbarbeyi Post, Eremopoanephelochloides Roshev., Glyceriataurica Steud., Nephelochloatripolitana Boiss. & Blanche, Poacilicensis Hance, Poaparadoxa Kar. & Kir., Poapersicavar.alpina Boiss and Poapersicasubsp.cypria Sam. Eremopoamedica is re-identified as a species of Puccinellia.