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1.
Genome ; 67(10): 339-350, 2024 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-38739948

RESUMO

Transposable elements (TEs) are widespread genomic components with substantial roles in genome evolution and sex chromosome differentiation. In this study, we compared the TE composition of three closely related fish with different sex chromosome systems: Megaleporinus elongatus (Z1Z1Z2Z2/Z1W1Z2W2), Megaleporinus macrocephalus (ZZ/ZW) (both with highly differentiated W sex chromosomes), and Leporinus friderici (without heteromorphic sex chromosomes). We created custom TE libraries for each species using clustering methods and manual annotation and prediction, and we predicted TE temporal dynamics through divergence-based analysis. The TE abundance ranged from 16% to 21% in the three mobilomes, with L. friderici having the lowest overall. Despite the recent amplification of TEs in all three species, we observed differing expansion activities, particularly between the two genera. Both Megaleporinus recently experienced high retrotransposon activity, with a reduction in DNA TEs, which could have implications in sex chromosome composition. In contrast, L. friderici showed the opposite pattern. Therefore, despite having similar TE compositions, Megaleporinus and Leporinus exhibit distinct TE histories that likely evolved after their separation, highlighting a rapid TE expansion over short evolutionary periods.


Assuntos
Elementos de DNA Transponíveis , Evolução Molecular , Cromossomos Sexuais , Animais , Cromossomos Sexuais/genética , Masculino , Feminino , Peixes/genética
2.
Genet Mol Biol ; 45(3 Suppl 1): e20220071, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36394537

RESUMO

Telomere has a central role in chromosomal stability events. Chromosome ends organized in telomere-loop prevent activation of DNA damage response (DDR) mechanisms, thus keeping the chromosome structure organized. On the other hand, free chromosome ends, dysfunctional telomeres, and interstitial telomeric sequences (ITS) can trigger chromosome rearrangements. Here, the telomere organization, function, and maintenance mechanisms, in addition to ITS types and their involvement in chromosome changes, were revisited. Despite a general (TTAGGG)n sequence being present in vertebrate telomeres, insects show more diversification of their telomere motif. The relation between ITS and chromosome rearrangements was observed in insects and vertebrates, demonstrating different types of genome organization and distribution. Some ITS cannot be considered relicts of chromosome rearrangements because probable they were inserted during a double-strand break repair mechanism. On the other hand, the involvement of telomere sequences participating or triggering chromosome rearrangements or organizing satellite DNA components in several species groups is evident. The genomic assembling advances and applying other methodologies over ITS, and their flanking regions, can help to understand the telomere participation in the chromosomal evolution in species groups with highly diversified karyotypes.

3.
Mol Genet Genomics ; 296(3): 513-526, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33625598

RESUMO

Repetitive DNAs comprise large portion of eukaryote genomes. In genome projects, the assembly of repetitive DNAs is challenging due to the similarity between repeats, which generate ambiguities for alignment. Fluorescence in situ hybridization (FISH) is a powerful technique for the physical mapping of various sequences on chromosomes. This technique is thus very helpful in chromosome-based genome assemblies, providing information on the fine architecture of genomes and their evolution. However, various protocols are currently used for FISH mapping, most of which are relatively laborious and expensive, or work properly only with a specific type of probes or sequences, and there is a need for a universal and affordable FISH protocol. Here we tested a FISH protocol for mapping of different DNA repeats, such as multigene families (rDNAs, U snDNAs, histone genes), satellite DNAs, microsatellites, transposable elements, DOP-PCR products, and telomeric motif (TTAGG)n, on the chromosomes of various insects and other arthropods. Different cell types and stages obtained from diverse tissues were used. The FISH procedure proved high quality and reliable results in all experiments performed. We obtained data on the chromosomal distribution of DNA repeats in representatives of insects and other arthropods. Thus, our results allow us to conclude that the protocol is universal and requires only time adjustment for chromosome/DNA denaturation. The use of this FISH protocol will facilitate studies focused on understanding the evolution and role of repetitive DNA in arthropod genomes.


Assuntos
Artrópodes/genética , Mapeamento Cromossômico/métodos , DNA/genética , Hibridização in Situ Fluorescente/métodos , Insetos/genética , Sequências Repetitivas de Ácido Nucleico/genética , Animais , Evolução Molecular , Fluorescência , Família Multigênica/genética , Telômero/genética
4.
Chromosome Res ; 28(3-4): 369-380, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32951078

RESUMO

Satellite DNAs (satDNA) are fast-evolving repetitive sequences organized in large tandem arrays, with characteristic enrichment in heterochromatin. Knowledge about evolutionary dynamics of this genome fraction is mostly restricted to its characterization in species with monocentric chromosomes, i.e., localized centromeres. In holocentric species, with non-localized centromeres, satDNAs have been largely ignored. Here we advance the understanding of satDNA evolution among holocentric species by characterization of the most abundant satDNAs in the hemipteran Holhymenia histrio, integrating genomic and chromosomal analyses. High plasticity at chromosomal and molecular levels was noticed for 34 satDNAs populating H. histrio genome. One satDNA family in particular (HhiSat01-184) was highly amplified on multiple chromosomes and also highly polymorphic. Our data support the emergence of a new satDNA family from this abundant satDNA, confined to a single chromosome. Moreover, we present new information about composition of a peculiar chromosome in Coreidae, the m-chromosome, and of the X chromosome. Overall, the molecular and chromosomal patterns for satDNAs in the holocentric species H. histrio seem to be similar to those observed in monocentric species.


Assuntos
Cromossomos de Insetos , DNA Satélite , Evolução Molecular , Genoma de Inseto , Genômica , Insetos/genética , Animais , Biologia Computacional/métodos , Genômica/métodos , Heterocromatina/genética , Sequenciamento de Nucleotídeos em Larga Escala , Hibridização in Situ Fluorescente
5.
Chromosome Res ; 26(3): 163-178, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-29524007

RESUMO

Euchroma Dejean, 1833 (Buprestidae: Coleoptera) is a monotypic genus comprising the species Euchroma gigantea, with populations presenting a degree of karyotypic variation/polymorphism rarely found within a single taxonomic (specific) unit, as well as drastically incompatible meiotic configurations in populations from extremes of the species range. To better understand the complex karyotypic evolution of E. gigantea, the karyotypes of specimens from five populations in Brazil were investigated using molecular cytogenetics and phylogenetic approaches. Herein, we used FISH with histone genes as well as sequencing of the COI to determine differential distribution of markers and relationships among populations. The analyses revealed new karyotypes, with variability for chromosome number and morphology of multiple sex chromosome mechanisms, occurrence of B chromosome variants (punctiform and large ones), and high dispersion of histone genes in different karyotypes. These data indicate that chromosomal polymorphism in E. gigantea is greater than previously reported, and that the species can be a valuable model for cytogenetic studies. The COI phylogenetic and haplotype analyses highlighted the formation of three groups with chromosomally polymorphic individuals. Finally, we compared the different karyotypes and proposed a model for the chromosomal evolution of this species. The species E. gigantea includes at least three cytogenetically polymorphic lineages. Moreover, in each of these lineages, different chromosomal rearrangements have been fixed. Dispersion of repetitive sequences may have favored the high frequency of these rearrangements, which could be related to both adaptation of the species to different habitats and the speciation process.


Assuntos
Cromossomos de Insetos/genética , Besouros/genética , Evolução Molecular , Cariótipo , Animais
6.
Chromosome Res ; 25(3-4): 313-325, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28916913

RESUMO

Despite their ubiquitous incidence, little is known about the chromosomal distribution of long interspersed elements (LINEs) in mammalian genomes. Phyllostomid bats, characterized by lineages with distinct trends of chromosomal evolution coupled with remarkable ecological and taxonomic diversity, represent good models to understand how these repetitive sequences contribute to the evolution of genome architecture and its link to lineage diversification. To test the hypothesis that LINE-1 sequences were important modifiers of bat genome architecture, we characterized the distribution of LINE-1-derived sequences on genomes of 13 phyllostomid species within a phylogenetic framework. We found massive accumulation of LINE-1 elements in the centromeres of most species: a rare phenomenon on mammalian genomes. We hypothesize that expansion of these elements has occurred early in the radiation of phyllostomids and recurred episodically. LINE-1 expansions on centromeric heterochromatin probably spurred chromosomal change before the radiation of phyllostomids into the extant 11 subfamilies and contributed to the high degree of karyotypic variation observed among different lineages. Understanding centromere architecture in a variety of taxa promises to explain how lineage-specific changes on centromere structure can contribute to karyotypic diversity while not disrupting functional constraints for proper cell division.


Assuntos
Centrômero/genética , Quirópteros/genética , Cromossomos de Mamíferos , Evolução Molecular , Elementos Nucleotídeos Longos e Dispersos , Animais , Heterocromatina , Hibridização in Situ Fluorescente , Cariótipo , Filogenia , Sequências Repetitivas de Ácido Nucleico , Retroelementos , Análise de Sequência de DNA
7.
BMC Genet ; 18(1): 81, 2017 08 29.
Artigo em Inglês | MEDLINE | ID: mdl-28851268

RESUMO

BACKGROUND: Satellite DNAs (satDNAs) are organized in repetitions directly contiguous to one another, forming long arrays and composing a large portion of eukaryote genomes. These sequences evolve according to the concerted evolution model, and homogenization of repeats is observed at the intragenomic level. Satellite DNAs are the primary component of heterochromatin, located primarily in centromeres and telomeres. Moreover, satDNA enrichment in specific chromosomes has been observed, such as in B chromosomes, that can provide clues about composition, origin and evolution of this chromosome. In this study, we isolated and characterized a satDNA in A and B chromosomes of Abracris flavolineata by integrating cytogenetic, molecular and genomics approaches at intra- and inter-population levels, with the aim to understand the evolution of satDNA and composition of B chromosomes. RESULTS: AflaSAT-1 satDNA was shared with other species and in A. flavolineata, was associated with another satDNA, AflaSAT-2. Chromosomal mapping revealed centromeric blocks variable in size in almost all chromosomes (except pair 11) of A complement for both satDNAs, whereas for B chromosome, only a small centromeric signal occurred. In distinct populations, variable number of AflaSAT-1 chromosomal sites correlated with variability in copy number. Instead of such variability, low sequence diversity was observed in A complement, but monomers from B chromosome were more variable, presenting also exclusive mutations. AflaSAT-1 was transcribed in five tissues of adults in distinct life cycle phases. CONCLUSIONS: The sharing of AflaSAT-1 with other species is consistent with the library hypothesis and indicates common origin in a common ancestor; however, AflaSAT-1 was highly amplified in the genome of A. flavolineata. At the population level, homogenization of repeats in distinct populations was documented, but dynamic expansion or elimination of repeats was also observed. Concerning the B chromosome, our data provided new information on the composition in A. flavolineata. Together with previous results, the sequences of heterochromatic nature were not likely highly amplified in the entire B chromosome. Finally, the constitutive transcriptional activity suggests a possible unknown functional role, which should be further investigated.


Assuntos
Cromossomos de Insetos , DNA Satélite , Gafanhotos/genética , Animais , Mapeamento Cromossômico , Variações do Número de Cópias de DNA , Evolução Molecular , Genômica , Hibridização in Situ Fluorescente , Transcrição Gênica
8.
Mol Genet Genomics ; 291(5): 1919-25, 2016 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27380138

RESUMO

Previous chromosome mapping of multigene families in Pentatomomorpha (Heteroptera) insects, which was restricted to the major rDNA, revealed remarkable conservation of number of clusters and chromosomal positions. Aiming to understand the chromosomal organization and evolutionary patterns of multigene families in karyotypes of Heteroptera, we performed a chromosomal mapping using four distinct multigene families in representatives of Coreidae (ten species) and Pentatomidae (five species). A single pair of the major rDNA cluster (18S rDNA probe) and a single pair of the minor rDNA cluster (5S rDNA probe), both terminally located were primarily observed, being, in most species, located in distinct chromosomes. However, some alternative patterns were also observed. In species in which the U2 snDNA and H4 gene clusters were mapped, they were mainly located in one autosomal pair each, wherein the H4 gene cluster was located in different positions. Our data suggest that the karyotype diversity reported in Coreidae is not reflected in the distribution diversity of multigene families. This contrasts with the data for Pentatomidae, with a conserved gross karyotype but a discrete diversity in the location of the clusters of multigene families, indicating genome dynamics for these markers. The findings are discussed to shed light on the possible causes for the conservation or variation observed and to assist in understanding the chromosomal evolutionary trends in the group.


Assuntos
Mapeamento Cromossômico/métodos , Cromossomos de Insetos/genética , Heterópteros/genética , Hibridização in Situ Fluorescente/métodos , Animais , DNA Ribossômico/genética , Evolução Molecular , Variação Genética , Heterópteros/classificação , Masculino , Família Multigênica , RNA Ribossômico 18S/genética , RNA Ribossômico 5S/genética
9.
Mol Genet Genomics ; 291(4): 1607-13, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27106499

RESUMO

The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.


Assuntos
Mapeamento Cromossômico/métodos , DNA Ribossômico/genética , Gafanhotos/genética , RNA Ribossômico 5S/genética , Animais , Cromossomos/genética , Evolução Molecular , Feminino , Masculino , Pseudogenes , Análise de Sequência de DNA , Análise de Sequência de Proteína
10.
Genome ; 59(8): 575-80, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27375029

RESUMO

B chromosomes have so far been described in about 80 species of Coleoptera, mainly using conventional staining analysis. In this study, 152 individuals of the dung beetle Dichotomius sericeus (Coleoptera), collected from three isolated geographical areas in the State of Pernambuco, Brazil, were analyzed to determine the frequency, prevalence, distribution, meiotic behavior, and possible B chromosome origin. The cytogenetic analysis consisted of conventional staining, C-banding, triple fluorochrome staining (CMA3/DA/DAPI), and fluorescent in situ hybridization using ribosomal DNAs (rDNAs) and H3 histone gene as probes, as well as microdissection and chromosome painting of the B chromosome. The B chromosomes were detected in all populations analyzed. Analysis revealed the heterochromatic nature and the presence of G+C-rich blocks and 18S rDNA on the B chromosome. FISH with DNA from microdissected B chromosome painted the entire extension of the B chromosome for all populations, besides the pericentromeric regions of all the autosomes, as well as the X chromosome. Finally, cross-hybridization in nine related species of Dichotomius using the microdissected B chromosome as probe did not reveal any hybridization signal. The results suggest an intraspecific and monophyletic origin for B chromosomes in D. sericeus, probably from the second or third autosomal pair.


Assuntos
Besouros/genética , Evolução Molecular , Animais , Bandeamento Cromossômico , Coloração Cromossômica , Cromossomos , DNA Ribossômico/genética , Genes de Insetos , Genes de RNAr , Genoma de Inseto , Heterocromatina/genética , Histonas/genética , Hibridização in Situ Fluorescente , Cariotipagem , Masculino , Microdissecção , RNA Ribossômico 18S/genética , RNA Ribossômico 5S/genética
11.
Mol Genet Genomics ; 290(5): 1787-92, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25846962

RESUMO

B chromosomes are frequently enriched for a wide variety of repetitive DNAs. Among grasshoppers in the species Abracris flavolineata (Ommatolampidinae) the B chromosomes are submetacentric, C-negative and harbor repetitive DNAs such as, U2 snDNA, C 0 t-1 DNA, two Mariner-like elements and some microsatellites. Here, we provide evidence showing the intragenome similarity between the B chromosome and the A complement in A. flavolineata, combining analysis of microdissection and chromosome painting and B chromosome-specific amplification through polymerase chain reaction (PCR) of U2 snDNA. Chromosome painting revealed signals spread through the C-negative regions, including the A and B chromosomes. Moreover, significant clustered signals forming bands were observed in some A chromosomes, and for the B chromosome, significant signals were located on both arms, which could be caused by accumulation of repetitive DNA sequences. The C-positive regions did not reveal any signals. Sequence comparison of U2 snDNA between that obtained from a genome without the B chromosome and that from µB-DNA revealed high similarity with the occurrence of four shared haplotypes, one of them (i.e., Hap1) being highly prevalent and putatively ancestral. The highest divergence from Hap1 was observed for Hap3, which was caused by only six mutational steps. These data support an intraspecific origin of the B chromosome in A. flavolineata that is highly similar with the A complement, and the low U2 snDNA sequence diversity observed in the B chromosome could be related to its recent origin, besides intrachromosomal concerted evolution for U2 snDNA repeats in the B chromosome.


Assuntos
Cromossomos de Insetos , DNA/genética , Gafanhotos/genética , RNA Nuclear Pequeno/genética , Animais , Masculino , Dados de Sequência Molecular
12.
Ecotoxicol Environ Saf ; 120: 174-83, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26074310

RESUMO

The insecticide imidacloprid and the herbicide sulfentrazone are two different classes of pesticides that are used for pest control in sugarcane agriculture. To evaluate the genotoxic potential of low concentrations of these two pesticides alone and in mixture, the comet assay and the micronucleus (MN) test employing fluorescence in situ hybridization (FISH) with a centromeric probe were applied in human hepatoma cell lines (HepG2), in a 24-h assay. Mutagenicity was assessed by Salmonella/microsome assay with TA98 and TA100 strains in the absence and presence of an exogenous metabolizing system (S9). The results showed significant inductions of MN in HepG2 cells by both pesticides, for all the tested concentrations. As evidenced in the comet assay, only the imidacloprid presented significant responses. When the two pesticides were associated, a significant induction of damage was observed in the HepG2 cells by the comet assay, but not by the MN test. Moreover, the MN induced by the mixtures of the pesticides appeared at lower levels than those induced by sulfentrazone and imidacloprid when tested alone. According to the FISH results, the damage induced by imidacloprid in the HepG2 cells resulted from a clastogenic action of this insecticide (76.6% of the MN did not present a centromeric signal). For the herbicide sulfentrazone and for the mixture of the pesticides, a similar frequency of MN with and without the presence of the centromeric signal (herbicide: 52.45% of the MN without centromeric signal and 47.54% of the MN with centromeric signal; mixture: 48.71% of the MN without centromeric signal and 51.42% of the MN with centromeric signal) was verified. Based on these results, it was concluded that each one of the pesticides evaluated interacts with the DNA of HepG2 cells and causes irreparable alterations in the cells. However, the combination of the pesticides showed an antagonistic effect on the cells and the damage induced was milder and not persistent in HepG2 cells. The results obtained by the Ames test did not point out significant results.


Assuntos
Imidazóis/toxicidade , Nitrocompostos/toxicidade , Praguicidas/toxicidade , Salmonella typhimurium/efeitos dos fármacos , Sulfonamidas/toxicidade , Triazóis/toxicidade , Ensaio Cometa , Dano ao DNA/efeitos dos fármacos , Relação Dose-Resposta a Droga , Células Hep G2 , Humanos , Hibridização in Situ Fluorescente , Testes para Micronúcleos , Testes de Mutagenicidade , Neonicotinoides
13.
Genetica ; 142(6): 575-81, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25447127

RESUMO

Cytogenetic studies of the Neotropical beetle genus Dichotomius (Scarabaeinae, Coleoptera) have shown dynamism for centromeric constitutive heterochromatin sequences. In the present work we studied the chromosomes and isolated repetitive sequences of Dichotomius schiffleri aiming to contribute to the understanding of coleopteran genome/chromosomal organization. Dichotomius schiffleri presented a conserved karyotype and heterochromatin distribution in comparison to other species of the genus with 2n = 18, biarmed chromosomes, and pericentromeric C-positive blocks. Similarly to heterochromatin distributional patterns, the highly and moderately repetitive DNA fraction (C 0 t-1 DNA) was detected in pericentromeric areas, contrasting with the euchromatic mapping of an isolated TE (named DsmarMITE). After structural analyses, the DsmarMITE was classified as a non-autonomous element of the type miniature inverted-repeat transposable element (MITE) with terminal inverted repeats similar to Mariner elements of insects from different orders. The euchromatic distribution for DsmarMITE indicates that it does not play a part in the dynamics of constitutive heterochromatin sequences.


Assuntos
Cromossomos de Insetos/genética , Besouros/genética , Elementos de DNA Transponíveis , Heterocromatina/genética , Animais , Bandeamento Cromossômico , Masculino
14.
Genetica ; 142(1): 49-58, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24368540

RESUMO

Chromosomal organization and the evolution of genome architecture can be investigated by physical mapping of the genes for 45S and 5S ribosomal DNAs (rDNAs) and by the analysis of telomeric sequences. We studied 12 species of bats belonging to four subfamilies of the family Phyllostomidae in order to correlate patterns of distribution of heterochromatin and the multigene families for rDNA. The number of clusters for 45S gene ranged from one to three pairs, with exclusively location in autosomes, except for Carollia perspicillata that had in X chromosome. The 5S gene all the species studied had only one site located on an autosomal pair. In no species the 45S and 5S genes collocated. The fluorescence in situ hybridization (FISH) probe for telomeric sequences revealed fluorescence on all telomeres in all species, except in Carollia perspicillata. Non-telomeric sites in the pericentromeric region of the chromosomes were observed in most species, ranged from one to 12 pairs. Most interstitial telomeric sequences were coincident with heterochromatic regions. The results obtained in the present work indicate that different evolutionary mechanisms are acting in Phyllostomidae genome architecture, as well as the occurrence of Robertsonian fusion during the chromosomal evolution of bats without a loss of telomeric sequences. These data contribute to understanding the organization of multigene families and telomeric sequences on bat genome as well as the chromosomal evolutionary history of Phyllostomidae bats.


Assuntos
Quirópteros/genética , DNA Ribossômico/genética , Heterocromatina , Sequências Repetitivas de Ácido Nucleico , Telômero , Animais , Centrômero , Quirópteros/classificação , Cromossomos de Mamíferos , Evolução Molecular , Hibridização in Situ Fluorescente , Família Multigênica , Filogenia
15.
Gene ; 927: 148723, 2024 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-38914242

RESUMO

Satellite DNA (satDNA) consists of tandem repeat sequences that typically evolve rapidly through evolutionary mechanisms, including unequal crossover, transposition events, and others. The evolutionary history of Euchroma gigantea is marked by complex chromosomal evolution between lineages, making this species an interesting model for understanding satDNA evolution at intraspecies level. Therefore, our aim was to comprehend the potential contribution of satDNAs to the greater chromosomal differentiation of evolutionary lineages in E. gigantea by investigating the differential patterns of amplification and contraction of the repeats. To achieve this, we employed de novo identification of satDNA using RepeatExplorer and TAREAN, allowing the satellitome characterization between lineages. A total of 26 satDNA families were identified, ranging from 18 to 1101 nucleotides in length, with most families being shared between individuals/lineages, as predicted by the library hypothesis, except for the satDNA EgiSat21-168 that was absent for Northeast Lineage. The total satDNA content of the individuals was less than 11.2%, and it appeared to increase in two directions following the chromosomal evolution model. Thirteen satDNAs exhibited different patterns of amplification, and nine ones were contracted among individuals. Additionally, most repeats showed a divergence of about 10% for these satDNAs, indicating satellitome differentiation for each lineage/individual. This scenario suggests that the expansion of the satellitome occurred differentially among individuals/lineages of E. gigantea, with the contribution of various DNA turnover mechanisms after geographical isolation, and that they could be involved with karyotype evolution.


Assuntos
Besouros , DNA Satélite , Evolução Molecular , DNA Satélite/genética , Animais , Besouros/genética , Besouros/classificação , Filogenia
16.
Genet Mol Biol ; 36(3): 341-6, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24130440

RESUMO

The genus Phanaeus is included in the tribe Phanaeini, one of the most diverse tribes within the subfamily Scarabaeinae in terms of chromosomal characteristics. However, so far the species of this genus were not studied with differential cytogenetic techniques, limiting any inference of the probable mechanisms responsible for this diversity. In this work, several techniques were applied with the aim of cytogenetically characterizing two Phanaeus species. The karyotype found for Phanaeus (Notiophanaeus) chalcomelas was 2n = 12, neo-XY, and that of P. (N.) splendidulus was 2n = 20, Xyp, considered primitive for the family Scarabaeidae. The chromosomes of both species showed a high amount of constitutive heterochromatin (CH), with blocks rich in base pairs GC (CMA3 (+)). Moreover, in P. (N.) chalcomelas the marks revealed by C-banding and fluorochrome staining were different in size, showing CH variability. Sites of 18S ribosomal DNA (rDNA) were identified in one autosomal pair of P. (N.) chalcomelas and in five autosomal pairs of P. (N.) splendidulus. On the other hand, only one autosomal pair exhibited 5S rDNA sequences in these species. The results suggest that the karyotype differentiation of the Phanaeus species studied here involved pericentric inversions and centric fusions, as well as mechanisms related to amplification and dispersion of CH and rDNA sequences.

17.
Ticks Tick Borne Dis ; 13(4): 101951, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35427959

RESUMO

The establishment and characterization of the ASE-14 cell line derived from embryos of Amblyomma sculptum is described here. Primary cultures were started, and after 60 days of culturing a confluent monolayer was formed and the first subculture was then carried out. After this, new subcultures were carried out every 4 weeks. Cryopreservation of cells was successful only after the 14th subculture. We compared the chromosomes of the ASE-14 cell line with those of parental ticks. Cytogenetic analysis revealed occurrences of variable and increased diploid numbers in the ASE-14 cell line in comparison with adult ticks, probably through polyploidization events, chromosome fusions and translocations, which allowed generation of cells with distinct diploid numbers. Confirmation of the origin of the A. sculptum cell line was obtained through conventional PCR and sequencing of a fragment of the mitochondrial 16S rRNA gene. In addition, no DNA from Anaplasma marginale, Anaplasma spp., Babesia/Theileria spp., Bartonella spp., Coxiella spp., Ehrlichia canis, Mycoplasma spp. or Rickettsia spp. was detected in the cells through PCR assays. Cytological analyses were performed using live phase contrast microscopy and cytocentrifuge smears stained with Giemsa, while periodic acid-Schiff and bromophenol blue staining techniques were used to detect polysaccharides and protein, respectively. In conclusion, a new cell line derived from embryos of A. sculptum was generated and characterized in this study. The ASE-14 cell line was deposited in the Tick Cell Biobank at the University of Liverpool, and in the Tick Cell Biobank South America Outpost at the Oswaldo Cruz Foundation (FIOCRUZ). The ASE-14 cell line is an important addition to the existing panel of tick cell lines and can be used as a tool for advancing research in various areas of the virology, bacteriology, biology and control of this tick.


Assuntos
Ixodidae , Rickettsia , Carrapatos , Amblyomma , Animais , Brasil , Linhagem Celular , Ixodidae/microbiologia , RNA Ribossômico 16S , Rickettsia/genética , Carrapatos/genética
18.
Genetica ; 139(3): 315-25, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21267635

RESUMO

We comparatively analyzed six Dichotomius species (Coleoptera: Scarabainae) through cytogenetic methods and mitochondrial genes sequencing in the aim to identify patterns of chromosomal evolution and heterochromatin differentiation in the group. The chromosomal data were accessed through the classical analysis of heterochromatin and mapping of high and moderately repeated DNAs (C (0) t-1 DNA fraction). Mitochondrial data were obtained from nucleotide sequences of the cytochrome oxidase I (COI) and 16S rRNA genes. The heterochromatin distribution was conserved but revealed variability in the base pair richness and repetitive DNA content, and an intense turnover of heterochromatic associated sequences seems to have occurred during Dichotomius speciation. Specifically for D. bos, an interesting pattern was observed, indicating apparently the presence of heterochromatic sequences composed of low copy-number sequences. Moreover, highly conserved terminal/sub-terminal sequences that could act as a telomeric or telomere-associated DNA were observed. The heterochromatin diversification patterns observed in Dichotomius were not accomplished by the diversification of the species studied, which may be a consequence of the intense dynamics that drive the evolution of repeated DNA clusters in the genome. Finally our findings also suggest that the use of C (0) t-1 DNA fraction represents a powerful, inexpensive and not time consuming tool to be applied in understanding heterochromatin and repetitive DNA organization.


Assuntos
Cromossomos de Insetos/genética , Besouros/genética , Evolução Molecular , Genoma de Inseto/genética , Heterocromatina/genética , Animais , Bandeamento Cromossômico , Mapeamento Cromossômico , Besouros/classificação , DNA Mitocondrial/genética , Cariotipagem , Masculino , Filogenia , Análise de Sequência de DNA
19.
Ticks Tick Borne Dis ; 12(5): 101770, 2021 09.
Artigo em Inglês | MEDLINE | ID: mdl-34230000

RESUMO

Tick cell lines have already proved to be a useful tool for obtaining more information about possible vector species and the factors governing their ability to transmit a pathogen. Here, we established and characterized a cell line (RBME-6) derived from embryos of Rhipicephalus microplus from Brazil. Primary tick cell cultures were prepared in L-15B medium supplemented with 20% fetal bovine serum and 10% tryptose phosphate broth. The cell monolayers were subcultured when they reached a density of approximately 8 × 10 5 cells/mL (95% viability). Only after the sixth subculture were cells thawed from storage in liquid nitrogen successfully. Cytological analyses were performed using live phase contrast microscopy and cytocentrifuge smears stained with Giemsa, while periodic acid-Schiff and bromophenol blue staining techniques were used to detect total polysaccharides and total protein, respectively . No DNA from Anaplasma spp., Anaplasma marginale, Babesia spp., Bartonella spp., Coxiella spp., Ehrlichia canis, Rickettsia spp. or Mycoplasma spp. was detected in the cells through PCR assays. In addition, we performed chromosomal characterization of the tick cell line and confirmed the R. microplus origin of the cell line through conventional PCR and sequencing of a fragment of the mitochondrial 16S rRNA gene. In conclusion, we established and characterized a new cell line from a Brazilian population of R. microplus, which may form a useful tool for studying several aspects of ticks and tick-borne pathogens.


Assuntos
Linhagem Celular , Rhipicephalus , Animais , Brasil , Linhagem Celular/fisiologia , Feminino
20.
Genetica ; 138(2): 191-5, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19757096

RESUMO

The most intriguing karyotypic variation in the Coleoptera involves variation in sex chromosome structure, origin and behavior. In this report we describe chromosomal characteristics of Deltochilum (Calhyboma) verruciferum (Coleoptera, Scarabaeidae) using conventional and differential cytogenetic techniques, with emphasis on the description of a rare sex bivalent in the Coleoptera and dispersion of repetitive DNA. This species shows 2n = 20,XY(p) with biarmed chromosomes. Analysis of constitutive heterochromatin through C-banding revealed mainly diphasic autosomes with short heterochromatic arms, while the X was completely heterochromatic and the Y was heterochromatic in the long arm. This pattern was confirmed through the use of CMA(3) fluorochrome that stained all heterochromatic regions. Silver nitrate staining marked all heterochromatic regions and the lumen of the sex bivalent in metaphase I. These results indicated that karyotypic differentiation in D. (C.) verruciferum involved autosomal amplification and dispersion of repetitive DNA and the origin of unusual sex chromosomes (XY(p)), generating a unique karyotype in this species.


Assuntos
Besouros/genética , Sequências Repetitivas de Ácido Nucleico/genética , Cromossomos Sexuais , Animais , Besouros/citologia , Besouros/metabolismo , Heterocromatina/metabolismo , Masculino , Meiose/genética , Técnicas de Amplificação de Ácido Nucleico , Aberrações dos Cromossomos Sexuais
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