Drift on holey landscapes as a dominant evolutionary process.

An organism's phenotype has been shaped by evolution but the specific processes have to be indirectly inferred for most species. For example, correlations among traits imply the historical action of correlated selection and, more generally, the expression and distribution of traits is expected to be reflective of the adaptive landscapes that have shaped a population. However, our expectations about how quantitative traits-like most behaviors, physiological processes, and life-history traits-should be distributed under different evolutionary processes are not clear. Here, we show that genetic variation in quantitative traits is not distributed as would be expected under dominant evolutionary models. Instead, we found that genetic variation in quantitative traits across six phyla and 60 species (including both Plantae and Animalia) is consistent with evolution across high-dimensional "holey landscapes." This suggests that the leading conceptualizations and modeling of the evolution of trait integration fail to capture how phenotypes are shaped and that traits are integrated in a manner contrary to predictions of dominant evolutionary theory. Our results demonstrate that our understanding of how evolution has shaped phenotypes remains incomplete and these results provide a starting point for reassessing the relevance of existing evolutionary models.

Phylogenetic conservation of behavioural variation and behavioural syndromes.

Individuals frequently differ consistently from one another in their average behaviours (i.e. 'animal personality') and in correlated suites of consistent behavioural responses (i.e. 'behavioural syndromes'). However, understanding the evolutionary basis of this (co)variation has lagged behind demonstrations of its presence. This lag partially stems from comparative methods rarely being used in the field. Consequently, much of the research on animal personality has relied on 'adaptive stories' focused on single species and populations. Here, we used a comparative approach to examine the role of phylogeny in shaping patterns of average behaviours, behavioural variation and behavioural correlations. In comparing the behaviours and behavioural variation for five species of Gryllid crickets, we found that phylogeny shaped average behaviours and behavioural (co)variation. Despite differences among species, behavioural responses and variation were most similar among more closely related species. These results suggest that phylogenetic constraints play an important role in the expression of animal personalities and behavioural syndromes and emphasize the importance of examining evolutionary explanations within a comparative framework.

Non-consumptive effects of predation: does perceived risk strengthen the genetic integration of behaviour and morphology in stickleback?

Predators can shape genetic correlations in prey by altering prey perception of risk. We manipulated perceived risk to test whether such non-consumptive effects tightened behavioural trait correlations in wild-caught stickleback from high- compared to low-risk environments due to genetic variation in plasticity. We expected tighter genetic correlations within perceived risk treatments than across them, and tighter genetic correlations in high-risk than in low-risk treatments. We identified genetic variation in plasticity, with genetic correlations between boldness, sociality, and antipredator morphology, as expected, being tighter within treatments than across them, for both of two populations. By contrast, genetic correlations did not tighten with exposure to risk. Tighter phenotypic correlations in wild stickleback may thus arise because predators induce correlational selection on environmental components of these traits, or because predators tighten residual correlations by causing environmental heterogeneity that is controlled in the laboratory. Our study places phenotypic integration firmly into an ecological context.

The Effects of Body Mass on Immune Cell Concentrations of Mammals.

Theory predicts that body mass should affect the way organisms evolve and use immune defenses. We investigated the relationship between body mass and blood neutrophil and lymphocyte concentrations among more than 250 terrestrial mammalian species. We tested whether existing theories (e.g., protecton theory, immune system complexity, and rate of metabolism) accurately predicted the scaling of immune cell concentrations. We also evaluated the predictive power of body mass for these leukocyte concentrations compared to sociality, diet, life history, and phylogenetic relatedness. Phylogeny explained >70% of variation in both lymphocytes and neutrophils, and body mass appeared more informative than other interspecific trait variation. In the best-fit mass-only model, neutrophils scaled hypermetrically (b=0.11) with body mass, whereas lymphocytes scaled just shallow of isometrically. Extrapolating to total cell numbers, this exponent means that an African elephant circulates 13.3 million times the neutrophils of a house mouse, whereas their masses differ by only 250,000-fold. We hypothesize that such high neutrophil numbers might offset the (i) higher overall parasite exposure that large animals face and/or (ii) the higher relative replication capacities of pathogens to host cells.

Behavioural syndromes shape evolutionary trajectories via conserved genetic architecture.

Behaviours are often correlated within broader syndromes, creating the potential for evolution in one behaviour to drive evolutionary changes in other behaviours. Despite demonstrations that behavioural syndromes are common, this potential for evolutionary effects has not been demonstrated. Here we show that populations of field crickets (Gryllus integer) exhibit a genetically conserved behavioural syndrome structure, despite differences in average behaviours. We found that the distribution of genetic variation and genetic covariance among behavioural traits was consistent with genes and cellular mechanisms underpinning behavioural syndromes rather than correlated selection. Moreover, divergence among populations' average behaviours was constrained by the genetically conserved behavioural syndrome. Our results demonstrate that a conserved genetic architecture linking behaviours has shaped the evolutionary trajectories of populations in disparate environments-illustrating an important way for behavioural syndromes to result in shared evolutionary fates.

Collision between biological process and statistical analysis revealed by mean centring.

Animal ecologists often collect hierarchically structured data and analyse these with linear mixed-effects models. Specific complications arise when the effect sizes of covariates vary on multiple levels (e.g. within vs. among subjects). Mean centring of covariates within subjects offers a useful approach in such situations, but is not without problems. A statistical model represents a hypothesis about the underlying biological process. Mean centring within clusters assumes that the lower level responses (e.g. within subjects) depend on the deviation from the subject mean (relative) rather than on the absolute scale of the covariate. This may or may not be biologically realistic. We show that mismatch between the nature of the generating (i.e. biological) process and the form of the statistical analysis produce major conceptual and operational challenges for empiricists. We explored the consequences of mismatches by simulating data with three response-generating processes differing in the source of correlation between a covariate and the response. These data were then analysed by three different analysis equations. We asked how robustly different analysis equations estimate key parameters of interest and under which circumstances biases arise. Mismatches between generating and analytical equations created several intractable problems for estimating key parameters. The most widely misestimated parameter was the among-subject variance in response. We found that no single analysis equation was robust in estimating all parameters generated by all equations. Importantly, even when response-generating and analysis equations matched mathematically, bias in some parameters arose when sampling across the range of the covariate was limited. Our results have general implications for how we collect and analyse data. They also remind us more generally that conclusions from statistical analysis of data are conditional on a hypothesis, sometimes implicit, for the process(es) that generated the attributes we measure. We discuss strategies for real data analysis in face of uncertainty about the underlying biological process.

Adaptive Alignment of Plasticity With Genetic Variation and Selection.

Theoretical research has outlined how selection may shape both genetic variation and the expression of phenotypic plasticity in multivariate trait space. Specifically, research regarding the evolution of patterns of additive genetic variances and covariances (summarized in matrix form as G) and complementary research into how selection may shape adaptive plasticity lead to the general prediction that G, plasticity, and selection surfaces are all expected to align with each other. However, less well discussed is how this prediction might be assessed and how the modeled theoretical processes are expected to manifest in actual populations. Here, we discuss the theoretical foundations of the overarching prediction of alignment, what alignment mathematically means, how researchers might test for alignment and important caveats to this testing. The most important caveat concerns the fact that, for plasticity, the prediction of alignment only applies to cases where plasticity is adaptive, whereas organisms express considerable plasticity that may be neutral or even maladaptive. We detail the ramifications of these alternative expressions of plasticity vis-à-vis predictions of alignment. Finally, we briefly highlight some important interpretations of deviations from the prediction of alignment and what alignment might mean for populations experiencing environmental and selective changes.

The Heritability of Behavior: A Meta-analysis.

The contribution of genetic variation to phenotypes is a central factor in whether and how populations respond to selection. The most common approach to estimating these influences is via the calculation of heritabilities, which summarize the contribution of genetic variation to phenotypic variation. Heritabilities also indicate the relative effect of genetic variation on phenotypes versus that of environmental sources of variation. For labile traits like behavioral responses, life history traits, and physiological responses, estimation of heritabilities is important as these traits are strongly influenced by the environment. Thus, knowing whether or not genetic variation is present within populations is necessary to understand whether or not these populations can evolve in response to selection. Here we report the results of a meta-analysis summarizing what we currently know about the heritability of behavior. Using phylogenetically controlled methods we assessed the average heritability of behavior (0.235)-which is similar to that reported in previous analyses of physiological and life history traits-and examined differences among taxa, behavioral classifications, and other biologically relevant factors. We found that there was considerable variation among behaviors as to how heritable they were, with migratory behaviors being the most heritable. Interestingly, we found no effect of phylogeny on estimates of heritability. These results suggest, first, that behavior may not be particularly unique in the degree to which it is influenced by factors other than genetics and, second, that those factors influencing whether a behavioral trait will have low or high heritability require further consideration.

Estimating heritable genetic contributions to innate immune and endocrine phenotypic correlations: A need to explore repeatability.

The immune system plays an important role in enhancing an individual's ability to survive in a world inhabited by pathogens and parasites. The innate immune system is regulated by processes encoded in an individual's genome, providing an avenue for selection to act on this system, as well as the phenotypic relationships generated between this system and other traits of interest. While relationships between innate immunity and endocrine traits (e.g. testosterone) have been reported often in the literature, these relationships are complex and may differ under varying environmental conditions. To better understand the relative contribution of innate immunity (or an endocrine or behavioral trait) to a phenotypic correlation with another trait, an estimation of the underlying heritable genetic variation of the trait of interest is needed. An upper level estimate of the heritability of such traits can be obtained from calculating its repeatability. We conducted a literature review to determine how often repeated samples of measures of innate immune function were conducted and repeatability estimates obtained. This review revealed a very limited number of repeatability estimates, with a large range (0.0-0.9); estimates were exclusively from livestock that have undergone strong artificial selection. This observation of the present literature suggests more work is needed in non-domesticated and free-living animals to begin to understand the underlying genetic contribution of innate immune function to phenotypic correlations of interest (e.g. testosterone and immunity) to behavioral ecologists, evolutionary physiologists and ecoimmunologists.

Consistent individual variation in day, night, and GnRH-induced testosterone concentrations in house sparrows (Passer domesticus).

The hypothalamic-pituitary-gonadal (HPG) axis, with gonadotropin-releasing hormone (GnRH) initiating the endocrine cascade, regulates testosterone secretion. Testosterone, through its pleiotropic effects, plays a crucial role in coordinating morphology, physiology and behavior in a reproductive context. The concentration of circulating testosterone, however, varies over the course of the day and in response to other internal or external stimuli, potentially making it difficult to relate testosterone sampled at one time point with traits of interest. Many researchers now utilize the administration of exogenous GnRH to elicit a standardized stimulation of testosterone secretion. However, it has remained unclear if and how this exogenously stimulated activation of the HPG axis is related with endogenously regulated testosterone that is capable of influencing testosterone related traits. Repeated measures of a hormone can uncover consistent individual variation in hormonal differences at the HPG axis level, variation that potentially stems from underlying genetic variation in a population experiencing identical environmental cues. Thus, we asked, using the house sparrow (Passer domesticus), how daily endogenous variation in testosterone profiles relates to GnRH-induced testosterone secretion. Further, we explore the relationship between endogenous daily testosterone peaks and GnRH-induced testosterone with badge size, a morphological trait related with status within a social group. We found that GnRH-induced testosterone levels reflect a highly repeatable hormonal phenotype that is strongly correlated with nighttime testosterone levels. The results demonstrate the usefulness of GnRH-induced testosterone in studies aimed at understanding individual variation and selection on endogenously regulated testosterone levels and the potential importance of nighttime testosterone levels to physiology and behavior.

The contribution of additive genetic variation to personality variation: heritability of personality.

Individual animals frequently exhibit repeatable differences from other members of their population, differences now commonly referred to as 'animal personality'. Personality differences can arise, for example, from differences in permanent environmental effects--including parental and epigenetic contributors--and the effect of additive genetic variation. Although several studies have evaluated the heritability of behaviour, less is known about general patterns of heritability and additive genetic variation in animal personality. As overall variation in behaviour includes both the among-individual differences that reflect different personalities and temporary environmental effects, it is possible for personality to be largely genetically influenced even when heritability of behaviour per se is quite low. The relative contribution of additive genetic variation to personality variation can be estimated whenever both repeatability and heritability are estimated for the same data. Using published estimates to address this issue, we found that approximately 52% of animal personality variation was attributable to additive genetic variation. Thus, while the heritability of behaviour is often moderate or low, the heritability of personality is much higher. Our results therefore (i) demonstrate that genetic differences are likely to be a major contributor to variation in animal personality and (ii) support the phenotypic gambit: that evolutionary inferences drawn from repeatability estimates may often be justified.

Quantifying individual variation in behaviour: mixed-effect modelling approaches.

Growing interest in proximate and ultimate causes and consequences of between- and within-individual variation in labile components of the phenotype - such as behaviour or physiology - characterizes current research in evolutionary ecology. The study of individual variation requires tools for quantification and decomposition of phenotypic variation into between- and within-individual components. This is essential as variance components differ in their ecological and evolutionary implications. We provide an overview of how mixed-effect models can be used to partition variation in, and correlations among, phenotypic attributes into between- and within-individual variance components. Optimal sampling schemes to accurately estimate (with sufficient power) a wide range of repeatabilities and key (co)variance components, such as between- and within-individual correlations, are detailed. Mixed-effect models enable the usage of unambiguous terminology for patterns of biological variation that currently lack a formal statistical definition (e.g. 'animal personality' or 'behavioural syndromes'), and facilitate cross-fertilisation between disciplines such as behavioural ecology, ecological physiology and quantitative genetics.

Inter- and intra-specific patterns of density dependence and population size variability in Salmoniformes.

Population dynamics are typically affected by a combination of density-independent and density-dependent factors, the latter of which have been conceptually and theoretically linked with how variable population sizes are over time-which in turn has been tied to how prone populations are to extinction. To address evidence for the occurrence of density dependence and its relationship with population size variability (pv), we quantified each of these for 126 populations of 8 species of Salmoniformes. Using random-effects models, we partitioned variation in the strength of density dependence and the magnitude of pv between and within species and estimated the correlation of density dependence and population size variability at both the between- and within-species levels. We found that variation in the strength of density dependence was predominately within species (I(2) = 0.12 [corrected] variation in population size variability was distributed both between and within species (I(2) = 0.40). Contrary to theoretical and conceptual expectations, the strength of density dependence and the magnitude of population size variability were positively correlated at the between species level (r = 0.90), although this estimate had 95 % credibility intervals (Bayesian analogues to confidence intervals) that overlapped zero. The within-species correlation between density dependence and population size variability was not distinguishable from zero. Given that density dependence for Salmoniformes was highly variable within species, we next determined the joint effects of intrinsic (density-dependent) and extrinsic (density-independent) factors on the population dynamics of a threatened salmonid, the Lahontan cutthroat trout (Oncorhynchus clarkii henshawi). We found that density-dependent and -independent factors additively contributed to population dynamics. This finding suggests that the observed within-species variability in density dependence might be attributable to local differences in the strength of density-independent factors.

Aggressive females become aggressive males in a sex-changing reef fish.

Many animal populations display consistent individual differences in suites of correlated behaviours. While these so called 'animal personalities' can substantially influence the ecology and evolution of populations, little is known about cross-sex correlations of behaviour and thus the potential of personality to limit sex-specific behavioural adaptations. Here, we experimentally induced sex-change in the sequentially hermaphroditic reef fish Parapercis cylindrica and demonstrate the existence of tight cross-sex correlations for two behaviours with presumed different sex-specific optima. Individuals that were relatively more active and aggressive females were found to become relatively more active and aggressive males. By identifying personality as a potential genetic constraint on the resolution of intralocus sexual conflict over behaviour, our findings have important ecological and evolutionary implications for a wide range of species.

The roles of competition and environmental heterogeneity in the maintenance of behavioral variation and covariation.

Many models of selection predict that populations will lose variation in traits that affect fitness. Nonetheless, phenotypic variation is commonly observed in natural populations. We tested the influences of competition and spatial heterogeneity on behavioral variation within and among populations of Merriam's kangaroo rats (Dipodomys merriami) and tested for the differential expression of trait correlations. We found that populations of D. merriami exhibited more aggression at sites with more competition. Contrary to theoretical predictions and empirical results in other systems, the sites with the greatest spatial heterogeneity and highest levels of competition did not exhibit the most behavioral variation among individuals. However, the greatest within-individual behavioral variability in boldness (response to cues of predator presence) was exhibited where spatial heterogeneity was highest. Aggression and boldness of D. merriami were highly repeatable, that is, individuals behaved in a consistent manner over time, and the two behaviors were also highly correlated. Interestingly, the strength of this correlation was greatest where the competitive community was least diverse. These findings add to increasing evidence that natural populations of animals exhibit patterns of behavioral covariance, or personality structure, and suggest that competitive variation may act to erode personality structure.

Differences in population size variability among populations and species of the family Salmonidae.

1. How population sizes vary with time is an important ecological question with both practical and theoretical implications. Because population size variability corresponds to the operation of density-dependent mechanisms and the presence of stable states, numerous researchers have attempted to conduct broad taxonomic comparisons of population size variability. 2. Most comparisons of population size variability suggest a general lack of taxonomic differences. However, these comparisons may conflate differences within taxonomic levels with differences among taxonomic levels. Further, the degree to which intraspecific differences may affect broader inferences has generally not been estimated and has largely been ignored. 3. To address this uncertainty, we examined intraspecific differences in population size variability for a total of 131 populations distributed among nine species of the Salmonidae. We extended this comparison to the interspecific level by developing species level estimates of population size variability. 4. We used a jackknife (re-sampling) approach to estimate intra- and interspecific variation in population size variability. We found significant intraspecific differences in how population sizes vary with time in all six species of salmonids where it could be tested as well as clear interspecific differences. Further, despite significant interspecific variation, the majority of variation present was at the intraspecific level. Finally, we found that classic and recently developed measures of population variability lead to concordant inferences. 5. The presence of significant intraspecific differences in all species examined suggests that the ability to detect broad taxonomic patterns in how population sizes change over time may be limited if variance is not properly partitioned among and within taxonomic levels.

The importance of quantitative trait differentiation in restoration: landscape heterogeneity and functional traits inform seed transfer guidelines.

For widely distributed species, understanding the scale over which genetic variation correlates to landscape structure and composition is critical. Particularly within the context of restoration, the evolution of genetic differences may impact success if seeds are maladapted to the restoration environment. In this study, we used Geum triflorum to quantify the scale over which genetic differences for quantitative traits important to adaptation have evolved, comparing the proportion of variance attributed to broad regional- and local population-level effects. Geum triflorum is a widely distributed species spanning a range of environments, including alvar and prairie habitats, which have extreme regional differences in soil-moisture availability. Alvar habitats are regions of thin soil over limestone that experience substantial seasonal variation in water availability, from flooding to desiccation annually. This contrasts with prairie habitats, whose deeper soils mitigate irregular flood-desiccation cycles. Using a common garden experiment, we evaluated 15 traits broadly grouped into three trait classes: resource allocation, stomatal characteristics, and leaf morphological traits for individuals sourced from prairie and alvar environments. We quantified the proportion of trait variance explained by regional- and population-scale effects and compared the proportion of regional- and population-trait variances explained across trait classes. Significant regional differentiation was observed for the majority of quantitative traits; however, population-scale effects were equal or greater than regional effects, suggesting that important genetic differences may have evolved across the finer population scale. Stomatal and resource allocation trait classes exhibited substantial regional differentiation relative to morphological traits, which may indicate increased strength of selection for stomatal and resource allocation traits relative to morphological traits. These patterns point towards the value in considering the scale over which genetic differences may have evolved for widely distributed species and identify different functional trait classes that may be valuable in establishing seed transfer guidelines.

Detecting trends in body size: empirical and statistical requirements for intraspecific analyses.

Attributing biological explanations to observed ecogeographical and ecological patterns require eliminating potential statistical and sampling artifacts as alternative explanations of the observed patterns. Here, we assess the role of sample size, statistical power, and geographic inclusivity on the general validity and statistical significance of relationships between body size and latitude for 3 well-studied species of turtles. We extend those analyses to emphasize the importance of using statistically robust data in determining macroecological patterns. We examined intraspecific trends in body size with latitude in Chelydra serpentina, Chrysemys picta, and Trachemys scripta using Pearson's correlations, diagnostic tests for influential points, and resampling. Existing data were insufficient to ascertain a latitudinal trend in body size for C. serpentina or T. scripta. There was a significant relationship for C. picta, however, resampling analyses show that, on average, 16 of the 23 available independent populations were needed to demonstrate a significant relationship and that at least 20 of 23 populations were required to obtain a statistically powerful correlation between body size and latitude. Furthermore, restricting the latitudes of populations resampled shows that body size trends of C. picta were largely due to leveraging effects of populations at the edge of the species range. Our results suggest that broad inferences regarding ecological trends in body size should be made with caution until underlying (intraspecific) patterns in body size can be statistically and conclusively demonstrated.

Behavioural syndromes in Merriam's kangaroo rats (Dipodomys merriami): a test of competing hypotheses.

Behavioural syndromes, correlations of behaviours conceptually analogous to personalities, have been a topic of recent attention due to their potential to explain trade-offs in behavioural responses, apparently maladaptive behaviour and limits to plasticity. Using Merriam's kangaroo rats (Dipodomys merriami), we assessed the explanatory power and generality of hypothesized syndrome structures derived from the literature and the natural history of the species. Several aspects of functionally distinct behavioural responses of D. merriami were quantified. Syndrome structures were compared using structural equation modelling and model selection procedures. A domain-general behavioural syndrome incorporating cross-functional relationships between measures of boldness, agonistic behaviour, flexibility and food hoarding best explained the data. This pattern suggests that D. merriami behaviours should not be viewed as discrete elements but as components of a multivariate landscape. Our results support arguments that a lack of independence between behaviours may be a general aspect of behavioural phenotypes and suggest that the ability of D. merriami's behaviour to respond to selection may be constrained by underlying connections.

Rodenticide grain bait ingredient acceptance by Norway rats (Rattus norvegicus), California ground squirrels (Spermophilus beecheyi) and pocket gophers (Thomomys bottae).

Vertebrate pest control in California is often accomplished through the use of rodenticide grain baits. These grain baits are composed of steam-rolled oats (SRO), a toxicant, an indicator dye and an oil combination. A series of tests were performed to determine the effects of various dye and oil formulations on acceptance of grain bait by Norway rats [Rattus norvegicus (Berk)], California ground squirrels [Spermophilus beecheyi (Richardson)] and pocket gophers (Thomomys bottae Eyd & Gerv). Seven different dyes, four oil formulations and clean (untreated) oats were tested for acceptance. The addition of the selected oils and dyes to grain resulted in no significant differences in consumption. This indicates that there is a wide variety of dyes that could be used in the formulation of rodenticides. These alternatives could aid in proper pesticide use, the deterrence of bait consumption by birds and possibly in ingredient adhesion to the finished bait.