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1.
Angew Chem Int Ed Engl ; 59(38): 16786-16794, 2020 09 14.
Artigo em Inglês | MEDLINE | ID: mdl-32488975

RESUMO

[FeFe] hydrogenases are the most active H2 converting catalysts in nature, but their extreme oxygen sensitivity limits their use in technological applications. The [FeFe] hydrogenases from sulfate reducing bacteria can be purified in an O2 -stable state called Hinact . To date, the structure and mechanism of formation of Hinact remain unknown. Our 1.65 Šcrystal structure of this state reveals a sulfur ligand bound to the open coordination site. Furthermore, in-depth spectroscopic characterization by X-ray absorption spectroscopy (XAS), nuclear resonance vibrational spectroscopy (NRVS), resonance Raman (RR) spectroscopy and infrared (IR) spectroscopy, together with hybrid quantum mechanical and molecular mechanical (QM/MM) calculations, provide detailed chemical insight into the Hinact state and its mechanism of formation. This may facilitate the design of O2 -stable hydrogenases and molecular catalysts.


Assuntos
Clostridium beijerinckii/enzimologia , Hidrogênio/metabolismo , Hidrogenase/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Oxigênio/metabolismo , Enxofre/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Hidrogênio/química , Hidrogenase/química , Proteínas Ferro-Enxofre/química , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Oxigênio/química , Espectrofotometria Infravermelho , Análise Espectral Raman , Enxofre/química , Espectroscopia por Absorção de Raios X
2.
Biol Chem ; 399(7): 787-798, 2018 06 27.
Artigo em Inglês | MEDLINE | ID: mdl-29894292

RESUMO

Pseudomonas putida rubredoxin-2 (Rxn2) is an essential member of the alkane hydroxylation pathway and transfers electrons from a reductase to the membrane-bound hydroxylase. The regioselective hydroxylation of linear alkanes is a challenging chemical transformation of great interest for the chemical industry. Herein, we report the preparation and spectroscopic characterization of cobalt-substituted P. putida Rxn2 and a truncated version of the protein consisting of the C-terminal domain of the protein. Our spectroscopic data on the Co-substituted C-terminal domain supports a high-spin Co(II) with a distorted tetrahedral coordination environment. Investigation of the two-domain protein Rxn2 provides insights into the metal-binding properties of the N-terminal domain, the role of which is not well understood so far. Circular dichroism, electron paramagnetic resonance and X-ray absorption spectroscopies support an alternative Co-binding site within the N-terminal domain, which appears to not be relevant in nature. We have shown that chemical reconstitution in the presence of Co leads to incorporation of Co(II) into the active site of the C-terminal domain, but not the N-terminal domain of Rxn2 indicating distinct roles for the two rubredoxin domains.


Assuntos
Cobalto/química , Rubredoxinas/química , Domínio Catalítico , Dicroísmo Circular , Cobalto/metabolismo , Espectroscopia de Ressonância de Spin Eletrônica , Pseudomonas putida/química , Rubredoxinas/metabolismo , Espectrometria por Raios X , Espectrofotometria Ultravioleta
3.
Chemistry ; 23(1): 128-136, 2017 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-27717044

RESUMO

Selective inhibitors of histone deacetylase 6 (HDAC6) are an emerging class of pharmaceuticals due to the involvement of HDAC6 in different pathways related to neurodegenerative diseases, cancer, and immunology. Herein, the synthesis of ten new benzohydroxamic acids, constructed by employing the tetrahydrobenzothiazepine core as a privileged pharmacophoric unit, is described. This is the first report on the synthesis and isolation of octahydrodibenzothiazepines and octahydro-6H-benzocycloheptathiazepines, which were then used to develop a new class of HDAC6 inhibitors. Evaluations of their HDAC-inhibiting activity resulted in the identification of cis-N-(4-hydroxycarbamoylbenzyl)-1,2,3,4,4a,5,11,11a-octahydrodibenzo[b,e][1,4]thiazepine-10,10-dioxide and cis-N-(4-hydroxycarbamoylbenzyl)-7-trifluoromethyl-1,2,3,4,4a,5,11,11a-octahydrodibenzo[b,e][1,4]thiazepine-10,10-dioxide as highly potent and selective HDAC6 inhibitors with activity in the low nanomolar range, which also show excellent selectivity on the enzymatic and cellular levels. Furthermore, four promising inhibitors were subjected to an Ames fluctuation assay, which revealed no mutagenic effects associated with these structures.


Assuntos
Inibidores de Histona Desacetilases/síntese química , Histona Desacetilases/metabolismo , Tiazepinas/química , Sítios de Ligação , Cicloeptanos/química , Cicloexanos/química , Desacetilase 6 de Histona , Inibidores de Histona Desacetilases/química , Histona Desacetilases/química , Humanos , Concentração Inibidora 50 , Isomerismo , Simulação de Dinâmica Molecular , Tiazepinas/síntese química
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