Enhanced resolution of marine viruses with violet side scatter.

Marine viruses make up an essential compartment of the marine ecosystem. They are the most abundant organisms and represent one of the biggest sources of unknown biodiversity. Viruses also have an important impact on bacterial and algal mortality in the ocean, and as such have a major influence on microbial diversity and biogeochemical cycling. However, little is known about the abundance and distribution patterns of viruses across the oceans and seas. Over the last 20 years, flow cytometry has been the technique of choice to detect and count the viral particles in natural samples. Nevertheless, due to their small size, the detection of marine viruses is still extremely challenging. In this article we describe how a new generation of flow cytometer which uses the side scatter (SSC) of violet photons from a 405 nm laser beam helps to improve the resolution for detecting marine viruses. To the best of our knowledge, this is the first report where virioplankton has been detected in aquatic samples using flow cytometry with a 405 nm violet SSC instead of a 488 nm blue SSC.

A novel electrochemical sensing platform for detection of dopamine based on gold nanobipyramid/multi-walled carbon nanotube hybrids.

Dopamine homeostasis is an important clinical diagnostic index, because an abnormal level in the human body is closely related to certain serious diseases. Herein, a novel electrochemical sensing platform based on gold nanobipyramid/multi-walled carbon nanotube hybrids (AuNBP/MWCNTs) is developed to detect dopamine in human fluids. Using field emission scanning electron microscopy, it is observed that AuNBPs of about 60 nm with two pyramids are well dispersed on the surface of MWCNTs. Energy-dispersive X-ray spectrometry, X-ray diffraction and X-ray photoelectron spectroscopy confirm that AuNBPs are self-assembled onto the surface of MWCNTs to form the hybrids. Cyclic voltammetry reveals that the AuNBP/MWCNTs exhibit good electrocatalytic activity toward dopamine oxidation owing to the synergistic effects of AuNBPs and MWCNTs. In addition, both cyclic voltammetry and differential pulse voltammetry display three well-resolved and distinct oxidation peaks on the AuNBP/MWCNT-modified glassy carbon electrode. Based on AuNBP/MWCNTs, the newly developed electrochemical sensor is used to detect dopamine in the presence of ascorbic acid and uric acid over a wide linear range from 50 nM to 2.7 mM and a low detection limit of 15 nM (at S/N = 3). The electrochemical sensor can also be applied for the quantitative analysis of dopamine in real samples. Graphical abstract A novel electrochemical sensing platform based on gold nanobipyramid/multi-walled carbon nanotube hybrids (AuNBP/MWCNTs) was proposed to detect dopamine in the presence of ascorbic acid and uric acid.

Insights into the structure of the pelagic microbial food web in the oligotrophic tropical Western Pacific: Examining trophic interactions and relationship with abiotic variables.

Microbial food webs (MFW) play an indispensable role in marine pelagic ecosystem, yet their composition and response to abiotic variables were poorly documented in the oligotrophic tropical Western Pacific. During winter of 2015, we conducted a survey to examine key components of MFW, including Synechococcus, Prochlorococcus, picoeukaryotes, heterotrophic prokaryotes (HP), heterotrophic/pigmented nanoflagellates and ciliates, across water column from surface to 2000 m. Each MFW component exhibited unique vertical distribution pattern, with abundance ratio varying over six and three orders of magnitude across Pico/Microplankton (1.6 ± 1.0 × 106) and Nano/Microplankton (3.2 ± 2.8 × 103), respectively. Furthermore, HP was main component for MFW in the bathypelagic (>1000 m) zone. Multivariate biota-environment analysis demonstrated that environmental variables, particularly temperature, significantly impacted MFW composition, suggesting that bottom-up control (resource availability) dominated the water column. Our study provides benchmark information for future environmental dynamics forcing on MFW in the oligotrophic tropical seas.

First report of the complete mitogenome of Microchironomus tabarui Sasa, 1987 (Diptera, Chironomidae) from Hebei Province, China.

Microchironomus tabarui Sasa, 1987 is an important bioindicator for freshwater ecosystem monitoring. Although COI barcode analyes have been performed on M. tabarui, the mitogenome of this taxon has not been assembled and analyzed. Here the complete mitogenome of M. tabarui was sequenced and analyzed to confirm the systematic and phylogenetic history of this species. The mitogenome is 15,667 bp long with high A + T content and consists of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a noncoding control region. The phylogenomic analysis support monophyletic Chironominae and close relationship between M. tabarui and Chironomus. Our results indicate that mitogenomes showed strong signals in phylogenetic reconstructions at the genus level of Chironominae.

Virioplankton distribution in the tropical western Pacific Ocean in the vicinity of a seamount.

The shallow Caroline Seamount is located in the tropical western Pacific Ocean. Its summit is 57 m below the surface and penetrates the euphotic zone. Therefore, it is ideal for the study of the influence of seamount on plankton distribution. Here, virioplankton abundance and distribution were investigated by flow cytometry (FCM) in the Caroline Seamount in August and September 2017. The total abundance of virus-like particles (VLP) was in the range of 0.64 × 106 -18.77 × 106  particles/ml and the average was 5.37 ± 3.75 × 106  particles/ml. Three to four distinct viral subclusters with similar side scatter but different green fluorescence intensities were identified. Above the deep chlorophyll maximum (DCM), two medium fluorescence virus (MFV) subclusters were discriminated. Between the DCM and the deeper layers, only one MFV subcluster was resolved. In general, low fluorescence viruses (LFV) comprised the most abundant subclusters. In the 75-150 m water column, however, the MFV abundance was higher than the LFV abundance. High fluorescence viruses (HFV) constituted the least abundant subcluster throughout the entire water column. Virioplankton abundance was significantly enhanced at the seamount stations. Environmental factors including water temperature and nitrate concentration were the most correlated with the variation in virioplankton abundance at the seamount stations. Interactions between shallow seamounts and local currents can support large virus standing stocks, causing a so-called indirect "seamount effect" on the virioplankton.