Automated Collective Variable Discovery for MFSD2A transporter from molecular dynamics simulations.

Biomolecules often exhibit complex free energy landscapes in which long-lived metastable states are separated by large energy barriers. Overcoming these barriers to robustly sample transitions between the metastable states with classical molecular dynamics (MD) simulations presents a challenge. To circumvent this issue, collective variable (CV)-based enhanced sampling MD approaches are often employed. Traditional CV selection relies on intuition and prior knowledge of the system. This approach introduces bias, which can lead to incomplete mechanistic insights. Thus, automated CV detection is desired to gain a deeper understanding of the system/process. Analysis of MD data with various machine learning algorithms, such as Principal Component Analysis (PCA), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA)-based approaches have been implemented for automated CV detection. However, their performance has not been systematically evaluated on structurally and mechanistically complex biological systems. Here, we applied these methods to MD simulations of the MFSD2A (Major Facilitator Superfamily Domain 2A) lysolipid transporter in multiple functionally relevant metastable states with the goal of identifying optimal CVs that would structurally discriminate these states. Specific emphasis was on the automated detection and interpretive power of LDA-based CVs. We found that LDA methods, which included a novel gradient descent-based multiclass harmonic variant, termed GDHLDA, we developed here, outperform PCA in class separation, exhibiting remarkable consistency in extracting CVs critical for distinguishing metastable states. Furthermore, the identified CVs included features previously associated with conformational transitions in MFSD2A. Specifically, conformational shifts in transmembrane helix 7 and in residue Y294 on this helix emerged as critical features discriminating the metastable states in MFSD2A. This highlights the effectiveness of LDA-based approaches in automatically extracting from MD trajectories CVs of functional relevance that can be used to drive biased MD simulations to efficiently sample conformational transitions in the molecular system.

Sparse ordinal discriminant analysis.

Ordinal class labels are frequently observed in classification studies across various fields. In medical science, patients' responses to a drug can be arranged in the natural order, reflecting their recovery postdrug administration. The severity of the disease is often recorded using an ordinal scale, such as cancer grades or tumor stages. We propose a method based on the linear discriminant analysis (LDA) that generates a sparse, low-dimensional discriminant subspace reflecting the class orders. Unlike existing approaches that focus on predictors marginally associated with ordinal labels, our proposed method selects variables that collectively contribute to the ordinal labels. We employ the optimal scoring approach for LDA as a regularization framework, applying an ordinality penalty to the optimal scores and a sparsity penalty to the coefficients for the predictors. We demonstrate the effectiveness of our approach using a glioma dataset, where we predict cancer grades based on gene expression. A simulation study with various settings validates the competitiveness of our classification performance and demonstrates the advantages of our approach in terms of the interpretability of the estimated classifier with respect to the ordinal class labels.

Discriminant analysis using MRI asymmetry indices and cognitive scores of women with temporal lobe epilepsy or schizophrenia.

PURPOSE: This study aims to assess the diagnostic power of brain asymmetry indices and neuropsychological tests for differentiating mesial temporal lobe epilepsy (MTLE) and schizophrenia (SCZ). METHODS: We studied a total of 39 women including 13 MTLE, 13 SCZ, and 13 healthy individuals (HC). A neuropsychological test battery (NPT) was administered and scored by an experienced neuropsychologist, and NeuroQuant (CorTechs Labs Inc., San Diego, California) software was used to calculate brain asymmetry indices (ASI) for 71 different anatomical regions of all participants based on their 3D T1 MR imaging scans. RESULTS: Asymmetry indices measured from 10 regions showed statistically significant differences between the three groups. In this study, a multi-class linear discriminant analysis (LDA) model was built based on a total of fifteen variables composed of the most five significantly informative NPT scores and ten significant asymmetry indices, and the model achieved an accuracy of 87.2%. In pairwise classification, the accuracy for distinguishing MTLE from either SCZ or HC was 94.8%, while the accuracy for distinguishing SCZ from either MTLE or HC was 92.3%. CONCLUSION: The ability to differentiate MTLE from SCZ using neuroradiological and neuropsychological biomarkers, even within a limited patient cohort, could make a substantial contribution to research in larger patient groups using different machine learning techniques.

SUnSeT: spectral unmixing of hyperspectral images for phenotyping soybean seed traits.

KEY MESSAGE: Hyperspectral features enable accurate classification of soybean seeds using linear discriminant analysis and GWAS for novel seed trait genes. Evaluating crop seed traits such as size, shape, and color is crucial for assessing seed quality and improving agricultural productivity. The introduction of the SUnSet toolbox, which employs hyperspectral sensor-derived image analysis, addresses this necessity. In a validation test involving 420 seed accessions from the Korean Soybean Core Collections, the pixel purity index algorithm identified seed- specific hyperspectral endmembers to facilitate segmentation. Various metrics extracted from ventral and lateral side images facilitated the categorization of seeds into three size groups and four shape groups. Additionally, quantitative RGB triplets representing seven seed coat colors, averaged reflectance spectra, and pigment indices were acquired. Machine learning models, trained on a dataset comprising 420 accession seeds and 199 predictors encompassing seed size, shape, and reflectance spectra, achieved accuracy rates of 95.8% for linear discriminant analysis model. Furthermore, a genome-wide association study utilizing hyperspectral features uncovered associations between seed traits and genes governing seed pigmentation and shapes. This comprehensive approach underscores the effectiveness of SUnSet in advancing precision agriculture through meticulous seed trait analysis.

Colorimetric array sensor based on bimetallic nitrogen-doped carbon-based nanozyme material to detect multiple antioxidants.

Copper-cobalt bimetallic nitrogen-doped carbon-based nanoenzymatic materials (CuCo@NC) were synthesized using a one-step pyrolysis process. A three-channel colorimetric sensor array was constructed for the detection of seven antioxidants, including cysteine (Cys), uric acid (UA), tea polyphenols (TP), lysine (Lys), ascorbic acid (AA), glutathione (GSH), and dopamine (DA). CuCo@NC with peroxidase activity was used to catalyze the oxidation of TMB by H2O2 at three different ratios of metal sites. The ability of various antioxidants to reduce the oxidation products of TMB (ox TMB) varied, leading to distinct absorbance changes. Linear discriminant analysis (LDA) results showed that the sensor array was capable of detecting seven antioxidants in buffer and serum samples. It could successfully discriminate antioxidants with a minimum concentration of 10 nM. Thus, multifunctional sensor arrays based on CuCo@NC bimetallic nanoenzymes not only offer a promising strategy for identifying various antioxidants but also expand their applications in medical diagnostics and environmental analysis of food.

Fault Diagnosis of a Multistage Centrifugal Pump Using Explanatory Ratio Linear Discriminant Analysis.

This study introduces an innovative approach for fault diagnosis of a multistage centrifugal pump (MCP) using explanatory ratio (ER) linear discriminant analysis (LDA). Initially, the method addresses the challenge of background noise and interference in vibration signals by identifying a fault-sensitive frequency band (FSFB). From the FSFB, raw hybrid statistical features are extracted in time, frequency, and time-frequency domains, forming a comprehensive feature pool. Recognizing that not all features adequately represent MCP conditions and can reduce classification accuracy, we propose a novel ER-LDA method. ER-LDA evaluates feature importance by calculating the explanatory ratio between interclass distance and intraclass scatteredness, facilitating the selection of discriminative features through LDA. This fusion of ER-based feature assessment and LDA yields the novel ER-LDA technique. The resulting selective feature set is then passed into a k-nearest neighbor (K-NN) algorithm for condition classification, distinguishing between normal, mechanical seal hole, mechanical seal scratch, and impeller defect states of the MCP. The proposed technique surpasses current cutting-edge techniques in fault classification.

Evaluation of a Voltametric E-Tongue Combined with Data Preprocessing for Fast and Effective Machine Learning-Based Classification of Tomato Purées by Cultivar.

The potential of a voltametric E-tongue coupled with a custom data pre-processing stage to improve the performance of machine learning techniques for rapid discrimination of tomato purées between cultivars of different economic value has been investigated. To this aim, a sensor array with screen-printed carbon electrodes modified with gold nanoparticles (GNP), copper nanoparticles (CNP) and bulk gold subsequently modified with poly(3,4-ethylenedioxythiophene) (PEDOT), was developed to acquire data to be transformed by a custom pre-processing pipeline and then processed by a set of commonly used classifiers. The GNP and CNP-modified electrodes, selected based on their sensitivity to soluble monosaccharides, demonstrated good ability in discriminating samples of different cultivars. Among the different data analysis methods tested, Linear Discriminant Analysis (LDA) proved to be particularly suitable, obtaining an average F1 score of 99.26%. The pre-processing stage was beneficial in reducing the number of input features, decreasing the computational cost, i.e., the number of computing operations to be performed, of the entire method and aiding future cost-efficient hardware implementation. These findings proved that coupling the multi-sensing platform featuring properly modified sensors with the custom pre-processing method developed and LDA provided an optimal tradeoff between analytical problem solving and reliable chemical information, as well as accuracy and computational complexity. These results can be preliminary to the design of hardware solutions that could be embedded into low-cost portable devices.

Gait Characterization in Duchenne Muscular Dystrophy (DMD) Using a Single-Sensor Accelerometer: Classical Machine Learning and Deep Learning Approaches.

Differences in gait patterns of children with Duchenne muscular dystrophy (DMD) and typically developing (TD) peers are visible to the eye, but quantifications of those differences outside of the gait laboratory have been elusive. In this work, we measured vertical, mediolateral, and anteroposterior acceleration using a waist-worn iPhone accelerometer during ambulation across a typical range of velocities. Fifteen TD and fifteen DMD children from 3 to 16 years of age underwent eight walking/running activities, including five 25 m walk/run speed-calibration tests at a slow walk to running speeds (SC-L1 to SC-L5), a 6-min walk test (6MWT), a 100 m fast walk/jog/run (100MRW), and a free walk (FW). For clinical anchoring purposes, participants completed a Northstar Ambulatory Assessment (NSAA). We extracted temporospatial gait clinical features (CFs) and applied multiple machine learning (ML) approaches to differentiate between DMD and TD children using extracted temporospatial gait CFs and raw data. Extracted temporospatial gait CFs showed reduced step length and a greater mediolateral component of total power (TP) consistent with shorter strides and Trendelenberg-like gait commonly observed in DMD. ML approaches using temporospatial gait CFs and raw data varied in effectiveness at differentiating between DMD and TD controls at different speeds, with an accuracy of up to 100%. We demonstrate that by using ML with accelerometer data from a consumer-grade smartphone, we can capture DMD-associated gait characteristics in toddlers to teens.

Classification in Early Fire Detection Using Multi-Sensor Nodes-A Transfer Learning Approach.

Effective early fire detection is crucial for preventing damage to people and buildings, especially in fire-prone historic structures. However, due to the infrequent occurrence of fire events throughout a building's lifespan, real-world data for training models are often sparse. In this study, we applied feature representation transfer and instance transfer in the context of early fire detection using multi-sensor nodes. The goal was to investigate whether training data from a small-scale setup (source domain) can be used to identify various incipient fire scenarios in their early stages within a full-scale test room (target domain). In a first step, we employed Linear Discriminant Analysis (LDA) to create a new feature space solely based on the source domain data and predicted four different fire types (smoldering wood, smoldering cotton, smoldering cable and candle fire) in the target domain with a classification rate up to 69% and a Cohen's Kappa of 0.58. Notably, lower classification performance was observed for sensor node positions close to the wall in the full-scale test room. In a second experiment, we applied the TrAdaBoost algorithm as a common instance transfer technique to adapt the model to the target domain, assuming that sparse information from the target domain is available. Boosting the data from 1% to 30% was utilized for individual sensor node positions in the target domain to adapt the model to the target domain. We found that additional boosting improved the classification performance (average classification rate of 73% and an average Cohen's Kappa of 0.63). However, it was noted that excessively boosting the data could lead to overfitting to a specific sensor node position in the target domain, resulting in a reduction in the overall classification performance.

Separating and reintegrating latent variables to improve classification of genomic data.

Genomic data sets contain the effects of various unobserved biological variables in addition to the variable of primary interest. These latent variables often affect a large number of features (e.g., genes), giving rise to dense latent variation. This latent variation presents both challenges and opportunities for classification. While some of these latent variables may be partially correlated with the phenotype of interest and thus helpful, others may be uncorrelated and merely contribute additional noise. Moreover, whether potentially helpful or not, these latent variables may obscure weaker effects that impact only a small number of features but more directly capture the signal of primary interest. To address these challenges, we propose the cross-residualization classifier (CRC). Through an adjustment and ensemble procedure, the CRC estimates and residualizes out the latent variation, trains a classifier on the residuals, and then reintegrates the latent variation in a final ensemble classifier. Thus, the latent variables are accounted for without discarding any potentially predictive information. We apply the method to simulated data and a variety of genomic data sets from multiple platforms. In general, we find that the CRC performs well relative to existing classifiers and sometimes offers substantial gains.

Gut microbiome in men with chronic prostatitis/chronic pelvic pain syndrome: profiling and its predictive significance.

PURPOSE: To investigate the difference in gut microbiome composition between patients with chronic prostatitis/chronic pelvic pain syndrome (CP/CPPS) and healthy controls, and to assess the potential of gut microbiota as predictive markers for CP/CPPS risk. METHODS: The present study included 41 CP/CPPS patients and 43 healthy controls in China. Fecal specimen data were obtained and analysed using 16S rRNA gene sequencing. Alpha and beta-diversity indices, relative microbiome abundances, cluster analysis, and linear discriminant analysis effect size (LEfSe) were employed. Microbial biomarkers were selected for the development of a diagnostic classification model, and the functional prediction was conducted using PICRUSt2. RESULTS: Alpha-diversity measures revealed no statistically significant difference in bacterial community structure between CP/CPPS patients and controls. However, significant differences were observed in the relative abundances of several bacterial genera. Beta-diversity analysis revealed a distinct separation between the two groups. Significant inter-group differences were noted at various taxonomic levels, with specific bacterial genera being significantly different in abundance. The LEfSe analysis indicated that three bacterial species were highly representative and seven bacterial species were low in CP/CPPS patients as compared to the control group. A diagnostic model for CP/CPPS based on microbial biomarkers exhibited good performance. PICRUSt2 functional profiling indicated significant differences in the development and regeneration pathway. CONCLUSION: Significant differences in the gut microbiome composition were found between groups. The study provided a novel diagnostic model for CP/CPPS based on microbiota, presenting promising potential for future therapeutic targets and non-invasive diagnostic biomarkers for CP/CPPS patients.

Interpretable classification for multivariate gait analysis of cerebral palsy.

BACKGROUND: The Gross Motor Function Classification System (GMFCS) is a widely used tool for assessing the mobility of people with Cerebral Palsy (CP). It classifies patients into different levels based on their gross motor function and its level is typically determined through visual evaluation by a trained expert. Although gait analysis is commonly used in CP research, the functional aspects of gait patterns has yet to be fully exploited. By utilizing the gait patterns to predict GMFCS, we can gain a more comprehensive understanding of how CP affects mobility and develop more effective interventions for CP patients. RESULT: In this study, we propose a multivariate functional classification method to examine the relationship between kinematic gait measures and GMFCS levels in both normal individuals and CP patients with varying GMFCS levels. A sparse linear functional discrimination framework is utilized to achieve an interpretable prediction model. The method is generalized to handle multivariate functional data and multi-class classification. Our method offers competitive or improved prediction accuracy compared to state-of-the-art functional classification approaches and provides interpretable discriminant functions that can characterize the kinesiological progression of gait corresponding to higher GMFCS levels. CONCLUSION: We generalize the sparse functional linear discrimination framework to achieve interpretable classification of GMFCS levels using kinematic gait measures. The findings of this research will aid clinicians in diagnosing CP and assigning appropriate GMFCS levels in a more consistent, systematic, and scientifically supported manner.

Predicting the diagnosis of various mental disorders in a mixed cohort using blood-based multi-protein model: a machine learning approach.

The lack of objective diagnostic methods for mental disorders challenges the reliability of diagnosis. The study aimed to develop an easily accessible and useable objective method for diagnosing major depressive disorder (MDD), schizophrenia (SZ), bipolar disorder (BPD), and panic disorder (PD) using serum multi-protein. Serum levels of brain-derived neurotrophic factor (BDNF), VGF (non-acronymic), bicaudal C homolog 1 (BICC1), C-reactive protein (CRP), and cortisol, which are generally recognized to be involved in different pathogenesis of various mental disorders, were measured in patients with MDD (n = 50), SZ (n = 50), BPD (n = 55), and PD along with 50 healthy controls (HC). Linear discriminant analysis (LDA) was employed to construct a multi-classification model to classify these mental disorders. Both leave-one-out cross-validation (LOOCV) and fivefold cross-validation were applied to validate the accuracy and stability of the LDA model. All five serum proteins were included in the LDA model, and it was found to display a high overall accuracy of 96.9% when classifying MDD, SZ, BPD, PD, and HC groups. Multi-classification accuracy of the LDA model for LOOCV and fivefold cross-validation (within-study replication) reached 96.9 and 96.5%, respectively, demonstrating the feasibility of the blood-based multi-protein LDA model for classifying common mental disorders in a mixed cohort. The results suggest that combining multiple proteins associated with different pathogeneses of mental disorders using LDA may be a novel and relatively objective method for classifying mental disorders. Clinicians should consider combining multiple serum proteins to diagnose mental disorders objectively.

Comparison of six machine learning methods for differentiating benign and malignant thyroid nodules using ultrasonographic characteristics.

BACKGROUND: Several machine learning (ML) classifiers for thyroid nodule diagnosis have been compared in terms of their accuracy, sensitivity, specificity, negative predictive value (NPV), positive predictive value (PPV), and area under the receiver operating curve (AUC). A total of 525 patients with thyroid nodules (malignant, n = 228; benign, n = 297) underwent conventional ultrasonography, strain elastography, and contrast-enhanced ultrasound. Six algorithms were compared: support vector machine (SVM), linear discriminant analysis (LDA), random forest (RF), logistic regression (LG), GlmNet, and K-nearest neighbors (K-NN). The diagnostic performances of the 13 suspicious sonographic features for discriminating benign and malignant thyroid nodules were assessed using different ML algorithms. To compare these algorithms, a 10-fold cross-validation paired t-test was applied to the algorithm performance differences. RESULTS: The logistic regression algorithm had better diagnostic performance than the other ML algorithms. However, it was only slightly higher than those of GlmNet, LDA, and RF. The accuracy, sensitivity, specificity, NPV, PPV, and AUC obtained by running logistic regression were 86.48%, 83.33%, 88.89%, 87.42%, 85.20%, and 92.84%, respectively. CONCLUSIONS: The experimental results indicate that GlmNet, SVM, LDA, LG, K-NN, and RF exhibit slight differences in classification performance.

Time-resolved fluorescence sensor array for the discrimination of phosphate anions using transition metal dichalcogenide quantum dots and Tb(III).

Phosphate detection has garnered widespread attention due to its biological and environmental impact. Among several optical techniques, time-resolved fluorescence (TRF) provides a sensitive way for the discrimination of analytes in a complex mixture as it exhibits less interference from the background, therefore providing a high signal-to-noise ratio. The sensitization of rare earth metal (REM) ions by semiconducting quantum dots (QDs) can help the former overcome the drawback of low absorption coefficient, therefore allowing exploitation of the additional advantage of the REM, namely the long-excited state lifetime. Here, we have developed a TRF-based sensor array consisting of three QDs, i.e. MoS2 , WS2 and MoSe2 as energy sensitizers for Tb3+ ions. Different QDs possess variable energy transfer abilities for Tb3+ ions. Therefore, they can be used to discriminate phosphates. It was also observed that CrO4 2- can competitively bind to Tb3+ and further enhance the efficiency of the sensor array so that it could discriminate six different phosphates at 200 µM concentration in aqueous as well as serum medium with a detection limit of 10 µM in aqueous medium. Therefore, the sensitivity of the TRF-based sensor array is rarely compromised in a complex mixture, which is advantageous over a fluorescence-based sensor array.

An Efficient Greedy Search Algorithm for High-dimensional Linear Discriminant Analysis.

High-dimensional classification is an important statistical problem that has applications in many areas. One widely used classifier is the Linear Discriminant Analysis (LDA). In recent years, many regularized LDA classifiers have been proposed to solve the problem of high-dimensional classification. However, these methods rely on inverting a large matrix or solving large-scale optimization problems to render classification rules-methods that are computationally prohibitive when the dimension is ultra-high. With the emergence of big data, it is increasingly important to develop more efficient algorithms to solve the high-dimensional LDA problem. In this paper, we propose an efficient greedy search algorithm that depends solely on closed-form formulae to learn a high-dimensional LDA rule. We establish theoretical guarantee of its statistical properties in terms of variable selection and error rate consistency; in addition, we provide an explicit interpretation of the extra information brought by an additional feature in a LDA problem under some mild distributional assumptions. We demonstrate that this new algorithm drastically improves computational speed compared with other high-dimensional LDA methods, while maintaining comparable or even better classification performance.

Strain FBG-Based Sensor for Detecting Fence Intruders Using Machine Learning and Adaptive Thresholding.

This paper demonstrates an intruder detection system using a strain-based optical fiber Bragg grating (FBG), machine learning (ML), and adaptive thresholding to classify the intruder as no intruder, intruder, or wind at low levels of signal-to-noise ratio. We demonstrate the intruder detection system using a portion of a real fence manufactured and installed around one of the engineering college's gardens at King Saud University. The experimental results show that adaptive thresholding can help improve the performance of machine learning classifiers, such as linear discriminant analysis (LDA) or logistic regression algorithms in identifying an intruder's existence at low optical signal-to-noise ratio (OSNR) scenarios. The proposed method can achieve an average accuracy of 99.17% when the OSNR level is <0.5 dB.

Carbocyanine-Based Optical Sensor Array for the Discrimination of Proteins and Rennet Samples Using Hypochlorite Oxidation.

Optical sensor arrays are widely used in obtaining fingerprints of samples, allowing for solutions of recognition and identification problems. An approach to extending the functionality of the sensor arrays is using a kinetic factor by conducting indicator reactions that proceed at measurable rates. In this study, we propose a method for the discrimination of proteins based on their oxidation by sodium hypochlorite with the formation of the products, which, in turn, feature oxidation properties. As reducing agents to visualize these products, carbocyanine dyes IR-783 and Cy5.5-COOH are added to the reaction mixture at pH 5.3, and different spectral characteristics are registered every several minutes (absorbance in the visible region and fluorescence under excitation by UV (254 and 365 nm) and red light). The intensities of the photographic images of the 96-well plate are processed by principal component analysis (PCA) and linear discriminant analysis (LDA). Six model proteins (bovine and human serum albumins, γ-globulin, lysozyme, pepsin, and proteinase K) and 10 rennet samples (mixtures of chymosin and pepsin from different manufacturers) are recognized by the proposed method. The method is rapid and simple and uses only commercially available reagents.

A Chemiresistor Sensor Array Based on Graphene Nanostructures: From the Detection of Ammonia and Possible Interfering VOCs to Chemometric Analysis.

Sensor arrays are currently attracting the interest of researchers due to their potential of overcoming the limitations of single sensors regarding selectivity, required by specific applications. Among the materials used to develop sensor arrays, graphene has not been so far extensively exploited, despite its remarkable sensing capability. Here we present the development of a graphene-based sensor array prepared by dropcasting nanostructure and nanocomposite graphene solution on interdigitated substrates, with the aim to investigate the capability of the array to discriminate several gases related to specific applications, including environmental monitoring, food quality tracking, and breathomics. This goal is achieved in two steps: at first the sensing properties of the array have been assessed through ammonia exposures, drawing the calibration curves, estimating the limit of detection, which has been found in the ppb range for all sensors, and investigating stability and sensitivity; then, after performing exposures to acetone, ethanol, 2-propanol, sodium hypochlorite, and water vapour, chemometric tools have been exploited to investigate the discrimination capability of the array, including principal component analysis (PCA), linear discriminant analysis (LDA), and Mahalanobis distance. PCA shows that the array was able to discriminate all the tested gases with an explained variance around 95%, while with an LDA approach the array can be trained to accurately recognize unknown gas contribution, with an accuracy higher than 94%.

Major Depressive Disorder and Chronic Fatigue Syndrome Show Characteristic Heart Rate Variability Profiles Reflecting Autonomic Dysregulations: Differentiation by Linear Discriminant Analysis.

Major depressive disorder (MDD) and chronic fatigue syndrome (CFS) have overlapping symptoms, and differentiation is important to administer the proper treatment. The present study aimed to assess the usefulness of heart rate variability (HRV) indices. Frequency-domain HRV indices, including high-frequency (HF) and low-frequency (LF) components, their sum (LF+HF), and their ratio (LF/HF), were measured in a three-behavioral-state paradigm composed of initial rest (Rest), task load (Task), and post-task rest (After) periods to examine autonomic regulation. It was found that HF was low at Rest in both disorders, but was lower in MDD than in CFS. LF and LF+HF at Rest were low only in MDD. Attenuated responses of LF, HF, LF+HF, and LF/HF to task load and an excessive increase in HF at After were found in both disorders. The results indicate that an overall HRV reduction at Rest may support a diagnosis of MDD. HF reduction was found in CFS, but with a lesser severity. Response disturbances of HRV to Task were observed in both disorders, and would suggest the presence of CFS when the baseline HRV has not been reduced. Linear discriminant analysis using HRV indices was able to differentiate MDD from CFS, with a sensitivity and specificity of 91.8% and 100%, respectively. HRV indices in MDD and CFS show both common and different profiles, and can be useful for the differential diagnosis.