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1.
Chembiochem ; 25(11): e202400118, 2024 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-38526556

RESUMO

Hydroxynitrile lyase (HNL) from the cyanogenic millipede Oxidus gracillis (OgraHNL) is a crucial enzyme in the cyanogenesis pathway. Here, the crystal structures of OgraHNL complexed with sulfate, benzaldehyde (BA), (R)-mandelonitrile ((R)-Man), (R)-2-chloromandelonitrile ((R)-2-Cl-Man), and acetone cyanohydrin (ACN) were solved at 1.6, 1.7, 2.3, 2.1, and 2.0 Šresolutions, respectively. The structure of OgraHNL revealed that it belonged to the lipocalin superfamily. Based on this structure, positive variants were designed to further improve the catalytic activity and enantioselectivity of the enzyme for asymmetric hydrocyanation and Henry reactions.


Assuntos
Aldeído Liases , Mutagênese Sítio-Dirigida , Aldeído Liases/metabolismo , Aldeído Liases/química , Aldeído Liases/genética , Animais , Benzaldeídos/metabolismo , Benzaldeídos/química , Acetonitrilas/química , Acetonitrilas/metabolismo , Modelos Moleculares , Cristalografia por Raios X , Nitrilas/metabolismo , Nitrilas/química , Estereoisomerismo
2.
Biochemistry ; 60(49): 3771-3782, 2021 12 14.
Artigo em Inglês | MEDLINE | ID: mdl-34843221

RESUMO

A new method to trap catalytic intermediate species was employed with Fe-type nitrile hydratase from Rhodococcus equi TG328-2 (ReNHase). ReNHase was incubated with substrates in a 23% (w/w) NaCl/H2O eutectic system that remained liquid at -20 °C, thereby permitting the observation of transient species that were present at electron paramagnetic resonance (EPR)-detectable levels in samples frozen while in the steady state. FeIII-EPR signals from the resting enzyme were unaffected by the presence of 23% NaCl, and the catalytic activity was ∼55% that in the absence of NaCl at the optimum pH of 7.5. The reaction of ReNHase in the eutectic system at -20 °C with the substrates acetonitrile or benzonitrile induced significant changes in the EPR spectra. A previously unobserved signal with highly rhombic g-values (g1 = 2.31) was observed during the steady state but did not persist beyond the exhaustion of the substrate, indicating that it arises from a catalytically competent intermediate. Distinct signals due to product complexes provide a detailed mechanism for product release, the rate-limiting step of the reaction. Assignment of the observed EPR signals was facilitated by density functional theory calculations, which provided candidate structures and g-values for various proposed ReNHase intermediates. Collectively, these results provide new insights into the catalytic mechanism of NHase and offer a new approach for isolating and characterizing EPR-active intermediates in metalloenzymes.


Assuntos
Acetonitrilas/química , Proteínas de Bactérias/química , Hidroliases/química , Ferro/química , Nitrilas/química , Rhodococcus equi/química , Acetonitrilas/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Biocatálise , Domínio Catalítico , Temperatura Baixa , Solventes Eutéticos Profundos/química , Teoria da Densidade Funcional , Espectroscopia de Ressonância de Spin Eletrônica , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Hidroliases/genética , Hidroliases/metabolismo , Concentração de Íons de Hidrogênio , Ferro/metabolismo , Cinética , Nitrilas/metabolismo , Subunidades Proteicas/química , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Rhodococcus equi/enzimologia , Cloreto de Sódio/química , Especificidade por Substrato , Água/química
3.
Int J Mol Sci ; 21(21)2020 Oct 23.
Artigo em Inglês | MEDLINE | ID: mdl-33113984

RESUMO

Arylacetonitrilase from Alcaligenes faecalis ATCC8750 (NitAF) hydrolyzes various arylacetonitriles to the corresponding carboxylic acids. A systematic strategy of amino acid residue screening through sequence alignment, followed by homology modeling and biochemical confirmation was employed to elucidate the determinant of NitAF catalytic efficiency. Substituting Phe-140 in NitAF (wild-type) to Trp did not change the catalytic efficiency toward phenylacetonitrile, an arylacetonitrile. The mutants with nonpolar aliphatic amino acids (Ala, Gly, Leu, or Val) at location 140 had lower activity, and those with charged amino acids (Asp, Glu, or Arg) exhibited nearly no activity for phenylacetonitrile. Molecular modeling showed that the hydrophobic benzene ring at position 140 supports a mechanism in which the thiol group of Cys-163 carries out a nucleophilic attack on a cyanocarbon of the substrate. Characterization of the role of the Phe-140 residue demonstrated the molecular determinant for the efficient formation of arylcarboxylic acids.


Assuntos
Alcaligenes faecalis/enzimologia , Aminoidrolases/química , Aminoidrolases/metabolismo , Fenilalanina/metabolismo , Acetonitrilas/metabolismo , Alcaligenes faecalis/genética , Sequência de Aminoácidos , Substituição de Aminoácidos , Aminoidrolases/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Domínio Catalítico , Interações Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Mutação , Conformação Proteica
4.
Molecules ; 24(23)2019 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-31766372

RESUMO

The arylacetonitrilase from the bacterium Pseudomonas fluorescens EBC191 has been intensively studied as a model to understand the molecular basis for the substrate-, reaction-, and enantioselectivity of nitrilases. The nitrilase converts various aromatic and aliphatic nitriles to the corresponding acids and varying amounts of the corresponding amides. The enzyme has been analysed by site-specific mutagenesis and more than 50 different variants have been generated and analysed for the conversion of (R,S)-mandelonitrile and (R,S)-2-phenylpropionitrile. These comparative analyses demonstrated that single point mutations are sufficient to generate enzyme variants which hydrolyse (R,S)-mandelonitrile to (R)-mandelic acid with an enantiomeric excess (ee) of 91% or to (S)-mandelic acid with an ee-value of 47%. The conversion of (R,S)-2-phenylpropionitrile by different nitrilase variants resulted in the formation of either (S)- or (R)-2-phenylpropionic acid with ee-values up to about 80%. Furthermore, the amounts of amides that are produced from (R,S)-mandelonitrile and (R,S)-2-phenylpropionitrile could be changed by single point mutations between 2%-94% and <0.2%-73%, respectively. The present study attempted to collect and compare the results obtained during our previous work, and to obtain additional general information about the relationship of the amide forming capacity of nitrilases and the enantiomeric composition of the products.


Assuntos
Acetonitrilas/metabolismo , Aminoidrolases/metabolismo , Mutação , Pseudomonas fluorescens/enzimologia , Aminoidrolases/genética , Especificidade por Substrato
5.
Chembiochem ; 19(2): 153-158, 2018 01 18.
Artigo em Inglês | MEDLINE | ID: mdl-29139594

RESUMO

3-Hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase was investigated in different organic cosolvents by means of kinetic and calorimetric measurements, molecular dynamics simulations, and small-angle X-ray scattering. The combined experimental and theoretical techniques were essential to complement each other's limitations in the investigation of the complex interaction pattern between the enzyme, different solvent types, and concentrations. In this way, the underlying mechanisms for the loss of enzyme activity in different water-miscible solvents could be elucidated. These include direct inhibitory effects onto the active center and structural distortions.


Assuntos
Acetonitrilas/metabolismo , Acil Coenzima A/metabolismo , Álcoois/metabolismo , Líquidos Iônicos/metabolismo , Acetonitrilas/química , Acil Coenzima A/química , Álcoois/química , Calorimetria , Líquidos Iônicos/química , Cinética , Simulação de Dinâmica Molecular , Espalhamento a Baixo Ângulo , Solventes/química , Solventes/metabolismo , Sulfolobus solfataricus/enzimologia , Difração de Raios X
6.
Biosci Biotechnol Biochem ; 82(11): 2021-2029, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30027801

RESUMO

Japanese apricot, Prunus mume Sieb. et Zucc., biosynthesizes the l-phenylalanine-derived cyanogenic glucosides prunasin and amygdalin. Prunasin has biological properties such as anti-inflammation, but plant extraction and chemical synthesis are impractical. In this study, we identified and characterized UGT85A47 from Japanese apricot. Further, UGT85A47 was utilized for prunasin microbial production. Full-length cDNA encoding UGT85A47 was isolated from Japanese apricot after 5'- and 3'-RACE. Recombinant UGT85A47 stoichiometrically catalyzed UDP-glucose consumption and synthesis of prunasin and UDP from mandelonitrile. Escherichia coli C41(DE3) cells expressing UGT85A47 produced prunasin (0.64 g/L) from racemic mandelonitrile and glucose. In addition, co-expression of genes encoding UDP-glucose biosynthetic enzymes (phosphoglucomutase and UTP-glucose 1-phosphate uridiltransferase) and polyphosphate kinase clearly improved prunasin production up to 2.3 g/L. These results showed that our whole-cell biocatalytic system is significantly more efficient than the existing prunasin production systems, such as chemical synthesis.


Assuntos
Escherichia coli/genética , Glucosiltransferases/genética , Nitrilas/metabolismo , Prunus armeniaca/enzimologia , Uridina Difosfato Glucose/biossíntese , Acetonitrilas/metabolismo , Biotransformação , Catálise , Clonagem Molecular , Glucosiltransferases/metabolismo , Concentração de Íons de Hidrogênio , Temperatura , Uridina Difosfato Glucose/metabolismo
7.
Proc Natl Acad Sci U S A ; 112(34): 10605-10, 2015 Aug 25.
Artigo em Inglês | MEDLINE | ID: mdl-26261304

RESUMO

Hydroxynitrile lyase (HNL) catalyzes the degradation of cyanohydrins and causes the release of hydrogen cyanide (cyanogenesis). HNL can enantioselectively produce cyanohydrins, which are valuable building blocks for the synthesis of fine chemicals and pharmaceuticals, and is used as an important biocatalyst in industrial biotechnology. Currently, HNLs are isolated from plants and bacteria. Because industrial biotechnology requires more efficient and stable enzymes for sustainable development, we must continuously explore other potential enzyme sources for the desired HNLs. Despite the abundance of cyanogenic millipedes in the world, there has been no precise study of the HNLs from these arthropods. Here we report the isolation of HNL from the cyanide-emitting invasive millipede Chamberlinius hualienensis, along with its molecular properties and application in biocatalysis. The purified enzyme displays a very high specific activity in the synthesis of mandelonitrile. It is a glycosylated homodimer protein and shows no apparent sequence identity or homology with proteins in the known databases. It shows biocatalytic activity for the condensation of various aromatic aldehydes with potassium cyanide to produce cyanohydrins and has high stability over a wide range of temperatures and pH values. It catalyzes the synthesis of (R)-mandelonitrile from benzaldehyde with a 99% enantiomeric excess, without using any organic solvents. Arthropod fauna comprise 80% of terrestrial animals. We propose that these animals can be valuable resources for exploring not only HNLs but also diverse, efficient, and stable biocatalysts in industrial biotechnology.


Assuntos
Acetonitrilas/metabolismo , Aldeído Liases/isolamento & purificação , Aldeídos/metabolismo , Artrópodes/enzimologia , Aldeído Liases/química , Aldeído Liases/metabolismo , Animais , Sequência de Bases , Benzaldeídos/metabolismo , Biocatálise , DNA Complementar/genética , Glicosilação , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Estrutura Molecular , Nitrilas/metabolismo , Especificidade de Órgãos , Processamento de Proteína Pós-Traducional , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , Estereoisomerismo
8.
Int J Mol Sci ; 19(11)2018 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-30413110

RESUMO

Salinity is considered as one of the most important abiotic challenges that affect crop productivity. Plant hormones, including salicylic acid (SA), are key factors in the defence signalling output triggered during plant responses against environmental stresses. We have previously reported in peach a new SA biosynthetic pathway from mandelonitrile (MD), the molecule at the hub of the cyanogenic glucoside turnover in Prunus sp. In this work, we have studied whether this new SA biosynthetic pathway is also present in plum and the possible role this pathway plays in plant plasticity under salinity, focusing on the transgenic plum line J8-1, which displays stress tolerance via an enhanced antioxidant capacity. The SA biosynthesis from MD in non-transgenic and J8-1 micropropagated plum shoots was studied by metabolomics. Then the response of J8-1 to salt stress in presence of MD or Phe (MD precursor) was assayed by measuring: chlorophyll content and fluorescence parameters, stress related hormones, levels of non-enzymatic antioxidants, the expression of two genes coding redox-related proteins, and the content of soluble nutrients. The results from in vitro assays suggest that the SA synthesis from the MD pathway demonstrated in peach is not clearly present in plum, at least under the tested conditions. Nevertheless, in J8-1 NaCl-stressed seedlings, an increase in SA was recorded as a result of the MD treatment, suggesting that MD could be involved in the SA biosynthesis under NaCl stress conditions in plum plants. We have also shown that the plum line J8-1 was tolerant to NaCl under greenhouse conditions, and this response was quite similar in MD-treated plants. Nevertheless, the MD treatment produced an increase in SA, jasmonic acid (JA) and reduced ascorbate (ASC) contents, as well as in the coefficient of non-photochemical quenching (qN) and the gene expression of Non-Expressor of Pathogenesis-Related 1 (NPR1) and thioredoxin H (TrxH) under salinity conditions. This response suggested a crosstalk between different signalling pathways (NPR1/Trx and SA/JA) leading to salinity tolerance in the transgenic plum line J8-1.


Assuntos
Acetonitrilas/metabolismo , Plantas Geneticamente Modificadas/efeitos dos fármacos , Prunus domestica/efeitos dos fármacos , Ácido Salicílico/metabolismo , Acetonitrilas/química , Vias Biossintéticas/efeitos dos fármacos , Plantas Geneticamente Modificadas/genética , Prunus domestica/genética , Ácido Salicílico/química , Estresse Salino , Sais/toxicidade
9.
World J Microbiol Biotechnol ; 34(7): 91, 2018 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-29896645

RESUMO

The conversion of aliphatic nitriles by the arylacetonitrilase from Pseudomonas fluorescens EBC191 (NitA) was analyzed. The nitrilase hydrolysed a wide range of aliphatic mono- and dinitriles and showed a preference for unsaturated aliphatic substrates containing 5-6 carbon atoms. In addition, increased reaction rates were also found for aliphatic nitriles carrying electron withdrawing substituents (e.g. chloro- or hydroxy-groups) close to the nitrile group. Aliphatic dinitriles were attacked only at one of the nitrile groups and with most of the tested dinitriles the monocarboxylates were detected as major products. In contrast, fumarodinitrile was converted to the monocarboxylate and the monocarboxamide in a ratio of about 65:35. Significantly different relative amounts of the two products were observed with two nitrilase variants with altered reaction specifities. NitA converted some aliphatic substrates with higher rates than 2-phenylpropionitrile, which is one of the standard substrates for arylacetonitrilases. This indicated that the traditional classification of nitrilases as "arylacetonitrilases", "aromatic" or "aliphatic" nitrilases might require some corrections. This was also suggested by the construction of some variants of NitA which were modified in an amino acid residue which was previously suggested to be essential for the conversion of aliphatic substrates by a homologous nitrilase.


Assuntos
Aminoidrolases/metabolismo , Ácidos Graxos/metabolismo , Nitrilas/metabolismo , Pseudomonas fluorescens/enzimologia , Pseudomonas fluorescens/metabolismo , Acetonitrilas/metabolismo , Aminoidrolases/genética , Amônia/metabolismo , Domínio Catalítico , Ácidos Graxos/química , Hidrólise , Modelos Moleculares , Mutagênese Sítio-Dirigida , Nitrilas/química , Especificidade por Substrato
10.
J Am Chem Soc ; 139(4): 1565-1574, 2017 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-28052671

RESUMO

Improving bioelectrocatalytic current response of redox enzymes on electrodes has been a focus in the development of enzymatic biosensors and biofuel cells. Herein a mediatorless electroreduction of oxygen is effectively improved in terms of a remarkable enhancement by ca. 600% in maximum reductive current by simply adding 20% ethanol into laccase solution during its immobilization onto single-walled carbon nanotubes (SWCNTs). Conformation analysis by circular dichroism and attenuated total reflectance infrared spectroscopy demonstrate promoted laccase-SWCNTs contact by ethanol, thus leading to favorable enzyme orientation on SWCNTs. Extended investigation on acetone-, acetonitrile-, N,N-dimethylformamide (DMF)-, or dimethyl sulfoxide (DMSO)-treated laccase-SWCNTs electrodes shows a 400% and 350% current enhancement at maxima upon acetone and acetonitrile treatment, respectively, and a complete diminish of reductive current by DMF and DMSO. These results together reveal the important role of organic solvents in regulating laccase immobilization for direct bioelectrocatalysis by balancing surface wetting and protein denaturing.


Assuntos
Técnicas Biossensoriais , Técnicas Eletroquímicas , Enzimas Imobilizadas/metabolismo , Lacase/metabolismo , Nanotubos de Carbono/química , Trametes/enzimologia , Acetona/química , Acetona/metabolismo , Acetonitrilas/química , Acetonitrilas/metabolismo , Biocatálise , Dimetil Sulfóxido/química , Dimetil Sulfóxido/metabolismo , Dimetilformamida/química , Dimetilformamida/metabolismo , Eletrodos , Enzimas Imobilizadas/química , Etanol/química , Etanol/metabolismo , Lacase/química , Modelos Moleculares , Solventes/química , Solventes/metabolismo
11.
Plant Cell Physiol ; 58(12): 2057-2066, 2017 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-29036663

RESUMO

Despite the long-established importance of salicylic acid (SA) in plant stress responses and other biological processes, its biosynthetic pathways have not been fully characterized. The proposed synthesis of SA originates from chorismate by two distinct pathways: the isochorismate and phenylalanine (Phe) ammonia-lyase (PAL) pathways. Cyanogenesis is the process related to the release of hydrogen cyanide from endogenous cyanogenic glycosides (CNglcs), and it has been linked to plant plasticity improvement. To date, however, no relationship has been suggested between the two pathways. In this work, by metabolomics and biochemical approaches (including the use of [13C]-labeled compounds), we provide strong evidences showing that CNglcs turnover is involved, at least in part, in SA biosynthesis in peach plants under control and stress conditions. The main CNglcs in peach are prunasin and amygdalin, with mandelonitrile (MD), synthesized from phenylalanine, controlling their turnover. In peach plants MD is the intermediary molecule of the suggested new SA biosynthetic pathway and CNglcs turnover, regulating the biosynthesis of both amygdalin and SA. MD-treated peach plants displayed increased SA levels via benzoic acid (one of the SA precursors within the PAL pathway). MD also provided partial protection against Plum pox virus infection in peach seedlings. Thus, we propose a third pathway, an alternative to the PAL pathway, for SA synthesis in peach plants.


Assuntos
Acetonitrilas/metabolismo , Prunus persica/metabolismo , Ácido Salicílico/metabolismo , Acetonitrilas/farmacologia , Aldeído Liases/genética , Aldeído Liases/metabolismo , Amigdalina/metabolismo , Ácido Benzoico/metabolismo , Enzimas/metabolismo , Regulação da Expressão Gênica de Plantas , Glicosídeos/metabolismo , Peróxido de Hidrogênio/metabolismo , Metabolômica/métodos , Fenilalanina/metabolismo , Fenilalanina/farmacologia , Doenças das Plantas/virologia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Vírus Eruptivo da Ameixa/patogenicidade , Prunus persica/efeitos dos fármacos , Prunus persica/genética , Prunus persica/virologia , Plântula/efeitos dos fármacos , Plântula/metabolismo , Estresse Fisiológico
12.
Dokl Biochem Biophys ; 474(1): 183-185, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28726102

RESUMO

We studied the effect of a heterogeneous environment on the stereoselectivity of transformation of racemic phenylglycine nitrile. Immobilized biocatalysts were prepared by adhesion of Pseudomonas fluorescens C2 cells on carbon-containing supports and covalent crosslinking of nitrile hydratase and amidase of Rhodococcus rhodochrous 4-1 to activated chitosan as well as by the method of cross-linked aggregates. At a reaction duration of 20 h, the ratio of phenylglycine stereoisomers changes depending on the presence of support in medium. The highest optical purity of the product (enantiomeric excess of L-phenylglycine solution, 98%) is achieved when enzyme aggregates of nitrile hydratase and amidase cross-linked with 0.1% glutaraldehyde are used as a biocatalyst.


Assuntos
Acetonitrilas/química , Acetonitrilas/metabolismo , Amidoidrolases/metabolismo , Biocatálise , Hidroliases/metabolismo , Pseudomonas/citologia , Amidoidrolases/química , Aderência Bacteriana , Biotransformação , Células Imobilizadas/citologia , Hidroliases/química , Hidrólise , Rhodococcus/enzimologia , Estereoisomerismo , Especificidade por Substrato
13.
Plant Mol Biol ; 91(3): 229-39, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-26928800

RESUMO

The giant knotweed Fallopia sachalinensis (Polygonaceae) synthesizes phenylacetonitrile (PAN) from L-phenylalanine when infested by the Japanese beetle Popillia japonica or treated with methyl jasmonate (MeJA). Here we identified (E/Z)-phenylacetaldoxime (PAOx) as the biosynthetic precursor of PAN and identified a cytochrome P450 that catalysed the conversion of (E/Z)-PAOx to PAN. Incorporation of deuterium-labelled (E/Z)-PAOx into PAN emitted from the leaves of F. sachalinensis was detected using gas chromatography-mass spectrometry. Further, using liquid chromatography-tandem mass spectrometry, we detected the accumulation of (E/Z)-PAOx in MeJA-treated leaves. These results showed that (E/Z)-PAOx is the biosynthetic precursor of PAN. MeJA-induced mRNAs were analysed by differential expression analysis using a next-generation sequencer. Of the 74,329 contigs obtained from RNA-seq and de novo assembly, 252 contigs were induced by MeJA treatment. Full-length cDNAs encoding MeJA-induced cytochrome P450s CYP71AT96, CYP82AN1, CYP82D125 and CYP715A35 were cloned using 5'- and 3'-RACE and were expressed using a baculovirus expression system. Among these cytochrome P450s, CYP71AT96 catalysed the conversion of (E/Z)-PAOx to PAN in the presence of NADPH and a cytochrome P450 reductase. It also acted on (E/Z)-4-hydroxyphenylacetaldoxime and (E/Z)-indole-3-acetaldoxime. The broad substrate specificity of CYP71AT96 was similar to that of aldoxime metabolizing cytochrome P450s. Quantitative RT-PCR analysis showed that CYP71AT96 expression was highly induced because of treatment with MeJA as well as feeding by the Japanese beetle. These results indicate that CYP71AT96 likely contributes the herbivore-induced PAN biosynthesis in F. sachalinensis.


Assuntos
Acetonitrilas/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Fallopia/metabolismo , Acetatos/farmacologia , Animais , Catálise , Besouros , Ciclopentanos/farmacologia , Sistema Enzimático do Citocromo P-450/genética , Fallopia/efeitos dos fármacos , Fallopia/fisiologia , Cromatografia Gasosa-Espectrometria de Massas , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Regulação da Expressão Gênica de Plantas/fisiologia , Herbivoria , Oxilipinas/farmacologia , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
14.
J Fluoresc ; 26(6): 1959-1966, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-27550168

RESUMO

The propensity of native state to form aggregated and fibrillar assemblies is a hallmark of amyloidosis. Our study was focused at analyzing the aggregation and fibrillation tendency of cytochrome c in presence of an organic solvent i.e. acetonitrile. In vitro analysis revealed that the interaction of cytochrome c with acetonitrile facilitated the oligomerization of cytochrome c via the passage through an intermediate state which was obtained at 20 % v/v concentration of acetonitrile featured by a sharp hike in the ANS fluorescence intensity with a blue shift of 20 nm compared to the native state. Oligomers and fibrils were formed at 40 and 50 % v/v concentration respectively as indicated by a significant hike in the ThT fluorescence intensity, red shift of 55 nm in congo red binding assay and an increase in absorbance at 350 nm. They possess ß-sheet structure as evident from appearance of peak at 217 nm. Finally, authenticity of oligomeric and fibrillar species was confirmed by TEM imaging which revealed bead like aggregates and a meshwork of thread like fibrils respectively. It could be suggested that the fibrillation of bovine cytchrome c could serve as a model protein to unravel the general aggregation and fibrillation pattern of heme proteins. Graphical abstract ᅟ.


Assuntos
Acetonitrilas/química , Acetonitrilas/metabolismo , Citocromos c/química , Citocromos c/metabolismo , Sequência de Aminoácidos , Animais , Bovinos , Vermelho Congo , Fluorescência , Humanos , Cinética , Modelos Moleculares , Conformação Proteica , Multimerização Proteica , Homologia de Sequência
15.
J Chem Ecol ; 42(1): 60-70, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26757731

RESUMO

Secondary metabolites play a crucial role in marine invertebrate chemical ecology. Thus, it is of great importance to understand factors regulating their production and sources of variability. This work aimed to study the variability of the bromotyrosine derivatives in the Mediterranean sponge Aplysina cavernicola, and also to better understand how biotic (reproductive state) and abiotic factors (seawater temperature) could partly explain this variability. Results showed that the A. cavernicola reproductive cycle has little effect on the variability of the sponges' secondary metabolism, whereas water temperature has a significant influence on the production level of secondary metabolites. Temporal variability analysis of the sponge methanolic extracts showed that bioactivity variability was related to the presence of the minor secondary metabolite dienone, which accounted for 50 % of the bioactivity observed. Further bioassays coupled to HPLC extract fractionation confirmed that dienone was the only compound from Aplysina alkaloids to display a strong bioactivity. Both dienone production and bioactivity showed a notable increase in October 2008, after a late-summer warming episode, indicating that A. cavernicola might be able to induce chemical changes to cope with environmental stressors.


Assuntos
Alcaloides/metabolismo , Metaboloma , Poríferos/metabolismo , Acetonitrilas/química , Acetonitrilas/metabolismo , Acetonitrilas/farmacologia , Aeromonas/efeitos dos fármacos , Alcaloides/química , Alcaloides/farmacologia , Animais , Cromatografia Líquida de Alta Pressão , Poríferos/química , Análise de Componente Principal , Água do Mar/química , Temperatura , Tirosina/análogos & derivados , Tirosina/química , Tirosina/metabolismo , Tirosina/farmacologia , Vibrio/efeitos dos fármacos
16.
Biotechnol Appl Biochem ; 63(4): 479-89, 2016 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-26014754

RESUMO

(R)-(-)-Mandelic acid (R-MA) is widely used both as a versatile intermediate for pharmaceuticals and a resolving agent in chiral resolution processes. In the current study, to improve the stability of operation, recombinant Escherichia coli cells expressing nitrilase from Alcaligenes faecalis were immobilized for the enantioselective hydrolysis of (R,S)-mandelonitrile to R-MA. Different immobilization methods including entrapment matrices, entrapment matrices cross-linked by cross-linking and polymerization agents, and direct cross-linking cells using glutaraldehyde (GA) or bionic silicon were investigated. To facilitate industrial solid-liquid separation, the direct cross-linking recombinant E. coli cells using diatomite/GA/polyethyleneimine with 135.95% relative activity compared with free cells was chosen using water as the reaction medium. The operational stability of the immobilized cells was obviously superior to that of free cells, without significant activity loss after 28 cycles of batch reaction and the successive production of R-MA could reach 1.88 M. Moreover, the immobilized cells showed good storage stability with about 52% relative activity after storing for 30 days at 4 °C. Therefore, the immobilized biocatalyst is very promising for upscale production of optically pure R-MA with high performance and low cost.


Assuntos
Acetonitrilas/metabolismo , Aminoidrolases/metabolismo , Biocatálise , Escherichia coli/citologia , Escherichia coli/metabolismo , Proteínas Recombinantes/metabolismo , Aminoidrolases/biossíntese , Técnicas de Cultura Celular por Lotes , Biotransformação , Células Imobilizadas/metabolismo , Escherichia coli/genética , Fermentação , Concentração de Íons de Hidrogênio , Hidrólise , Proteínas Recombinantes/biossíntese , Especificidade por Substrato , Temperatura
17.
Biotechnol Lett ; 38(3): 455-61, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26564406

RESUMO

OBJECTIVES: To identify a novel nitrilase with S-selectivity toward mandelonitrile that can produce (S)-mandelic acid in one step. RESULTS: A novel nitrilase PpL19 from Pseudomonas psychrotolerans L19 was discovered by genome mining. It showed S-selectivity with an enantiomeric excess of 52.7 % when used to hydrolyse (R, S)-mandelonitrile. No byproduct was observed. PpL19 was overexpressed in Escherichia coli BL21 (DE3) and formed inclusion bodies that were active toward mandelonitrile and stable across a broad range of temperature and pH. In addition, PpL19 hydrolysed nitriles with diverse structures; arylacetonitriles were the optimal substrates. Homology modelling and docking studies of both enantiomers of mandelonitrile in the active site of nitrilase PpL19 shed light on the enantioselectivity. CONCLUSIONS: A novel nitrilase PpL19 from P. psychrotolerans L19 was mined and distinguished from other nitrilases as it was expressed as an active inclusion body and showed S-selectivity toward mandelonitrile.


Assuntos
Acetonitrilas/metabolismo , Aminoidrolases/genética , Aminoidrolases/metabolismo , Ácidos Mandélicos/metabolismo , Pseudomonas/enzimologia , Pseudomonas/genética , Aminoidrolases/química , Clonagem Molecular , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Concentração de Íons de Hidrogênio , Corpos de Inclusão/enzimologia , Modelos Moleculares , Simulação de Acoplamento Molecular , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Temperatura
18.
Ecotoxicol Environ Saf ; 133: 97-104, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-27428706

RESUMO

Dichloroacetonitrile (DCAN) is a typical nitrogenous disinfection by-product (N-DBP) and its toxicity on aquatic animals is investigated for the first time. The present study was designed to investigate the potential adverse effects of DCAN on zebrafish. DCAN could induce developmental toxicity to zebrafish embryos. A significant decrease in hatchability and an increase in malformation and mortality occurred when DCAN concentration was above 100µg/L. Heart function alteration and neuronal function disturbance occurred at concentration higher than 500 and 100µg/L, respectively. Further, DCAN was easily accumulated in adult zebrafish. The rank order of declining bioconcentration factor (BCF) was liver (1240-1670)> gill (1210-1430)> muscle (644-877). DCAN caused acute metabolism damage to adult zebrafish especially at 8 days exposure, at which time the "Integrated Biomarker Response" (IBR) index value reached 798 at 1mg/L DCAN dose. Acute DNA damage was induced to adult zebrafish by DCAN even at 10µg/L dose.


Assuntos
Acetonitrilas/toxicidade , Desinfetantes/toxicidade , Embrião não Mamífero/efeitos dos fármacos , Desenvolvimento Embrionário/efeitos dos fármacos , Poluentes Químicos da Água/toxicidade , Acetonitrilas/metabolismo , Animais , Comportamento Animal/efeitos dos fármacos , Biomarcadores/metabolismo , Dano ao DNA/efeitos dos fármacos , Desinfecção , Frequência Cardíaca/efeitos dos fármacos , Estresse Oxidativo/efeitos dos fármacos , Natação , Purificação da Água , Peixe-Zebra
19.
Bioprocess Biosyst Eng ; 39(3): 413-20, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26742952

RESUMO

Biotechnological potential of nitrilases are prompting significant interest in finding the novel microbes capable of hydrolyzing nitriles. In this view, we have screened about 450 bacterial strains for nitrilase production using bioconversion of iminodiacetonitrile (IDAN) to iminodiacetic acid (IDA) through hydrolysis and obtained six nitrilase-producing isolates. Among these six isolates, IICT-akl252 was promising which was identified as Lysinibacillus boronitolerans. This is the first report on L. boronitolerans for nitrilase activity. Optimization of various medium and reaction parameters for maximizing the nitrilase production using whole cells in shake flask was carried out for L. boronitolerans IICT-akl252. Sucrose (2 %) as a carbon source attained better nitrilase yield while IDAN appeared to be the preferable inducer (0.2 %). The maximum IDA formation was achieved with 100 mM IDAN and 150 mg/ml cells at 30 °C and pH 6.5. After optimization of the culture and reaction conditions, the activity of nitrilase was increased by 2.3-fold from 27.2 to 64.5 U. The enzyme was stable up to 1 h at 50 °C. The enzyme was able to hydrolyze aliphatic, aromatic and heterocyclic nitrile substrates.


Assuntos
Acetonitrilas/metabolismo , Aminoidrolases/biossíntese , Bacillaceae/enzimologia , Proteínas de Bactérias/biossíntese , Iminoácidos/metabolismo , Sacarose/metabolismo
20.
Toxicol Ind Health ; 32(8): 1478-1485, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25614581

RESUMO

Dibromoacetonitrile (DBAN) is a disinfection by-product classified as a potential human and animal carcinogen. This study aimed at investigating the ability of myeloperoxidase (MPO) to oxidize DBAN to cyanide (CN-) in vitro Detection of CN- served as a marker for the possible generation of free radical intermediates implicated in DBAN-induced toxicity. Optimum conditions for the oxidation of DBAN to CN- were characterized with respect to pH, temperature, and time of incubation as well as DBAN, MPO, potassium chloride, and hydrogen peroxide (H2O2) concentrations in incubation mixtures. Maximum reaction velocity and Michaelis-Menten constant were assessed. Addition of sodium hypochlorite to the reaction mixtures significantly enhanced the rate of the reaction. Addition of the MPO inhibitors, sodium azide, 4-amino benzoic acid hydrazine, or indomethacin to the reaction mixtures significantly decreased the rate of DBAN oxidation. Inclusion of the antioxidant enzyme superoxide dismutase in the incubation mixtures significantly decreased the rate of reaction. Inclusion of the sulfhydryl compounds as reduced glutathione, N-acetylcysteine, d-penicillamine, or l-cysteine enhanced the rate of DBAN oxidation. These results demonstrate the ability of MPO/H2O2/chloride ion system to oxidize DBAN to CN- and provide insight for the elucidation of DBAN chronic toxicity.


Assuntos
Acetonitrilas/metabolismo , Carcinógenos Ambientais/metabolismo , Cianetos/metabolismo , Peroxidase/metabolismo , Venenos/metabolismo , Poluentes Químicos da Água/metabolismo , Acetonitrilas/toxicidade , Biomarcadores/metabolismo , Biotransformação , Carcinógenos Ambientais/toxicidade , Cianetos/toxicidade , Desinfecção , Ativação Enzimática/efeitos dos fármacos , Inibidores Enzimáticos/farmacologia , Humanos , Peróxido de Hidrogênio/química , Peróxido de Hidrogênio/metabolismo , Concentração de Íons de Hidrogênio , Cinética , Oxirredução , Peroxidase/antagonistas & inibidores , Peroxidase/química , Venenos/toxicidade , Hipoclorito de Sódio/farmacologia , Especificidade por Substrato , Compostos de Sulfidrila/farmacologia , Superóxido Dismutase/metabolismo , Temperatura , Poluentes Químicos da Água/toxicidade , Purificação da Água
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