A portable fluorescence spectroscopy imaging system for automated root phenotyping in soil cores in the field.

Root architecture traits are a target for pre-breeders. Incorporation of root architecture traits into new cultivars requires phenotyping. It is attractive to rapidly and directly phenotype root architecture in the field, avoiding laboratory studies that may not translate to the field. A combination of soil coring with a hydraulic push press and manual core-break counting can directly phenotype root architecture traits of depth and distribution in the field through to grain development, but large teams of people are required and labour costs are high with this method. We developed a portable fluorescence imaging system (BlueBox) to automate root counting in soil cores with image analysis software directly in the field. The lighting system was optimized to produce high-contrast images of roots emerging from soil cores. The correlation of the measurements with the root length density of the soil cores exceeded the correlation achieved by human operator measurements (R (2)=0.68 versus 0.57, respectively). A BlueBox-equipped team processed 4.3 cores/hour/person, compared with 3.7 cores/hour/person for the manual method. The portable, automated in-field root architecture phenotyping system was 16% more labour efficient, 19% more accurate, and 12% cheaper than manual conventional coring, and presents an opportunity to directly phenotype root architecture in the field as part of pre-breeding programs. The platform has wide possibilities to capture more information about root health and other root traits in the field.

A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes.

The potential exists to breed for root system architectures that optimize resource acquisition. However, this requires the ability to screen root system development quantitatively, with high resolution, in as natural an environment as possible, with high throughput. This paper describes the construction of a low-cost, high-resolution root phenotyping platform, requiring no sophisticated equipment and adaptable to most laboratory and glasshouse environments, and its application to quantify environmental and temporal variation in root traits between genotypes of Brassica rapa L. Plants were supplied with a complete nutrient solution through the wick of a germination paper. Images of root systems were acquired without manual intervention, over extended periods, using multiple scanners controlled by customized software. Mixed-effects models were used to describe the sources of variation in root traits contributing to root system architecture estimated from digital images. It was calculated that between one and 43 replicates would be required to detect a significant difference (95% CI 50% difference between traits). Broad-sense heritability was highest for shoot biomass traits (>0.60), intermediate (0.25-0.60) for the length and diameter of primary roots and lateral root branching density on the primary root, and lower (<0.25) for other root traits. Models demonstrate that root traits show temporal variations of various types. The phenotyping platform described here can be used to quantify environmental and temporal variation in traits contributing to root system architecture in B. rapa and can be extended to screen the large populations required for breeding for efficient resource acquisition.

Good for a national cemetery: questions of land use and an 1888 Botanical Expedition across Northern Michigan.

In the second half of the nineteenth century, lumbermen logged the virgin pine forests of northern Michigan. The assumption was that the "plow would follow the axe," and agriculture would dominate the region as it did in the southern half of the state. When farming did not quickly take root, William James Beal and Liberty Hyde Bailey led an expedition of scientists and journalists on a trip across northern Michigan in June 1888 to collect botanical samples, to find a site for a state forest reserve, and to recommend appropriate farming enterprises. This essay contends that without a key reforestation advocate in charles Garfield the explorers focused too much on the questions related to botany and agriculture.While agriculture would ultimately thrive in some parts of the cutover, much of the region was unsuitable for intensive farming. The failure of the scientists to convey these limits adequately in newspaper articles and subsequent reports allowed for their work to be used by agricultural boosters throughout the region. The result was a cycle of erosion, fire, and farm abandonment that proved to be a political problem in Michigan for the first three decades of the twentieth century.

Comparing Norse animal husbandry practices: paleoethnobotanical analyses from Iceland and Greenland.

The popular view of the Norse settlement across the North Atlantic describes colonies with similar subsistence practices being established from the Faroe Islands in the west to L'Anse aux Meadows in the east. The importance of plant resources to the Norse animal husbandry strategies implemented by settlers upon arrival are not well established, nor are the changes these strategies underwent, eventually resulting in different cultural solutions to varying environmental and social factors. This paper compares archaeobotanical samples from two Icelandic archaeological sites, Svalbarð and Gjögur, and one Greenlandic site, Gården Under Sandet (GUS). Results of this comparison suggest that heathland shrubs were an important fodder resource for caprines in both Iceland and Greenland while apophytes ("weedy taxa") were part of the cattle fodder in Greenland. Further, the results indicate that mucking out of cattle barns to provide fertilizer was likely practiced at the GUS site in the Western Norse settlement of Greenland.

Science and policy: valuing framing, language and listening.

This paper considers the context for science contributing to policy development and explores some critical issues that should inform science advocacy and influence with policy makers. The paper argues that the key challenges are at least as much in educating conservation scientists and science communicators about society and policy making as they are in educating society and policy makers about science. The importance of developing processes to ensure that scientists and science communicators invest in the development of relationships based on respect and understanding of their audience in both communities and amongst policy makers provides a critical first step. The objectives of the Global Strategy for Plant Conservation acknowledge the importance of developing the capacities and public engagement necessary to implement the Strategy, including knowledge transfer and community capacity building. However, the development of targets to equip institutions and plant conservation professionals to explicitly address the barriers to influencing policy development through knowledge transfer and integration require further consideration.

The context and development of a global framework for plant conservation.

A new international initiative for plant conservation was first called for as a resolution of the International Botanical Congress in 1999. The natural home for such an initiative was considered to be the Convention on Biological Diversity (CBD), and the Conference of the Parties (COP) to the CBD agreed to consider a Global Strategy for Plant Conservation (GSPC) at its 5th meeting in 2000. It was proposed that the GSPC could provide an innovative model approach for target setting within the CBD and, prior to COP5, a series of inter-sessional papers on proposed targets and their justification were developed by plant conservation experts. Key factors that ensured the adoption of the GSPC by the CBD in 2002 included: (1) ensuring that prior to and during COP5, key Parties in each region were supportive of the Strategy; (2) setting targets at the global level and not attempting to impose these nationally; and (3) the offer by Botanic Gardens Conservation International (BGCI) to support a GSPC position in the CBD Secretariat for 3 years, which provided a clear indication of the support for the GSPC from non-governmental organizations (NGO).

Redução de esforço amostral vs. retenção de informação em inventários de pteridófitas na Amazônia Central / Sample effort reduction vs. information retention in inventories of pteridophytes in Central Amazonia

A extensa área coberta pelo domínio amazônico e os recursos financeiros limitados para estudos da biodiversidade exigem programas de pesquisa que obtenham o máximo de informação com os menores custos. Com o objetivo de avaliar as conseqüências da redução do esforço amostral sobre a retenção da informação ecológica, testou-se como diferentes larguras de parcela afetam os resultados da relação entre variação ambiental e composição da comunidade de pteridófitas da Amazônia Central. Foram feitas medidas da inclinação do terreno, abertura do dossel e do teor de argila do solo, em 37 parcelas de floresta de terra-firme. Todos os indivíduos de pteridófitas foram identificados e mapeados com relação a três faixas de amostragem. Foram testados os efeitos das variáveis ambientais sobre a composição de pteridófitas em parcelas de 250 x 2,5 m e em sub-amostras com a largura da parcela reduzida. A redução de 2,5 para 1 m na largura da parcela (60 por cento de redução no esforço amostral) correspondeu a uma redução de 24 por cento no custo do projeto, considerado os custos das excursões à campo, e a uma redução no número de espécies amostradas de 52 para 44. A redução 2,5 para 2 m na largura da parcela causou redução de apenas duas (4 por cento) nas espécies amostradas e 8 por cento no custo do projeto. Para todas as larguras testadas, a composição da comunidade esteve associada ao teor de argila e não esteve associada à inclinação do terreno. O efeito de abertura de dossel sobre a composição de espécies de pteridófitas não foi coerente entre os diferentes tamanhos de amostra. Esta incoerência deve estar relacionada à importância relativamente menor da luz sobre a estruturação da comunidade. Concluímos que as amostras com menor tamanho foram suficientemente informativas para detectar os principais gradientes de composição e sua associação aos fatores ambientais. Isso permitiria a redução nos custos totais ou alocação de mais parcelas...

The large area covered by the Amazonian domain and the limited financial support for biodiversity studies demand efficient research programs. Aiming to evaluate the consequences of reduced sampling effort on the retention of ecological information, we tested how differences in plot width affect the perceived relationship between environmental variation and the composition of the pteridophyte community in Central Amazonia. Measures of slope, canopy openness and soil clay content were taken in 37 terra-firme forest plots. All pteridophyte individuals were identified and mapped according to three sample strips. We tested the effects of environmental variables on pteridophyte composition of 250 x 2.5 meters-plots and on sub-samples of reduced width. The reduction of plot width from 2.5 to 1 m (60 percent reduction in sampling effort) corresponded to a reduction of 24 percent of the project's costs concerning field work expenses. This would reduce the number of sampled species from 52 to 44. The reduction of 20 percent plot width (from 2.5 to 2 m) would cause a reduction of two (4 percent) sampled species and a reduction of 8 percent of the costs. For all tested plot widths, community composition was associated with soil clay content and was not associated with the terrain slope. The effect of canopy openness on pteridophyte species composition was not consistent among sample sizes. These may be related to the relatively lower importance of light availability in determining community structure at the studied spatial scale. We concluded that the smallest plots were informative enough to detect the main gradients of composition and their association to environmental factors. This would allow a reduction in total costs, or the allocation of available budget to more plots, which could increase the power of the statistical analyses, reduce the confidence intervals and increase probability of detecting more species.