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1.
Anal Chem ; 92(17): 11516-11519, 2020 09 01.
Artigo em Inglês | MEDLINE | ID: mdl-32815363

RESUMO

High-resolution magic-angle-spinning 1H NMR spectroscopy (HR-MAS NMR) is a well-established technique for assessing the biochemical composition of intact tissue samples. In this study, we utilized a method based on HR-MAS NMR spectroscopy with slice localization (SLS) to achieve spatial resolution of metabolites. The obtained 7 slice spectra from each of the model samples (i.e., chicken thigh muscle with skin and murine renal biopsy including medulla (M) and cortex (C)) showed distinct metabolite compositions. Furthermore, we analyzed previously acquired 1H HR-MAS NMR spectra of separated cortex and medulla samples using multivariate statistical methods. Concentrations of glycerophosphocholine (GPC) were found to be significantly higher in the renal medulla compared to the cortex. Using GPC as a biomarker, we identified the tissue slices that were predominantly the cortex or medulla. This study demonstrates that HR-MAS SLS combined with multivariate statistics has the potential for identifying tissue heterogeneity and detailed biochemical characterization of complex tissue samples.


Assuntos
Biomarcadores/análise , Glicerilfosforilcolina/análise , Espectroscopia de Ressonância Magnética/métodos , Animais , Biópsia , Técnicas Biossensoriais , Galinhas , Córtex Renal/química , Metabolômica , Camundongos Endogâmicos C57BL , Análise Multivariada , Músculos/química , Pele/química , Coxa da Perna
2.
Chembiochem ; 21(23): 3338-3348, 2020 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-32667131

RESUMO

The controlled self-assembly of peptide- and protein-based pharmaceuticals is of central importance for their mode of action and tuning of their properties. Peptide YY3-36 (PYY3-36 ) is a 36-residue peptide hormone that reduces food intake when peripherally administered. Herein, we describe the synthesis of a PYY3-36 analogue functionalized with a metal-ion-binding 2,2'-bipyridine ligand that enables self-assembly through metal complexation. Upon addition of CuII , the bipyridine-modified PYY3-36 peptide binds stoichiometric quantities of metal ions in solution and contributes to the organization of higher-order assemblies. In this study, we aimed to explore the size effect of the self-assembly in vivo by using non-invasive quantitative single-photon emission computed tomography/computed tomography (SPECT/CT) imaging. For this purpose, bipyridine-modified PYY3-36 was radiolabeled with a chelator holding 111 InIII , followed by the addition of CuII to the bipyridine ligand. SPECT/CT imaging and biodistribution studies showed fast renal clearance and accumulation in the kidney cortex. The radiolabeled bipyridyl-PYY3-36 conjugates with and without CuII presented a slightly slower excretion 1 h post injection compared to the unmodified-PYY3-36 , thus demonstrating that higher self-assemblies of the peptide might have an effect on the pharmacokinetics.


Assuntos
Cobre/farmacocinética , Peptídeo YY/farmacocinética , Tomografia Computadorizada de Emissão de Fóton Único , Tomografia Computadorizada por Raios X , 2,2'-Dipiridil/química , 2,2'-Dipiridil/farmacocinética , Animais , Complexos de Coordenação/síntese química , Complexos de Coordenação/química , Complexos de Coordenação/farmacocinética , Cobre/química , Feminino , Córtex Renal/química , Córtex Renal/metabolismo , Ligantes , Camundongos , Camundongos Endogâmicos C57BL , Peptídeo YY/síntese química , Peptídeo YY/química , Eliminação Renal , Distribuição Tecidual
3.
Drug Metab Dispos ; 45(5): 556-568, 2017 05.
Artigo em Inglês | MEDLINE | ID: mdl-28270564

RESUMO

In vitro-in vivo extrapolation of drug metabolism data obtained in enriched preparations of subcellular fractions rely on robust estimates of physiologically relevant scaling factors for the prediction of clearance in vivo. The purpose of the current study was to measure the microsomal and cytosolic protein per gram of kidney (MPPGK and CPPGK) in dog and human kidney cortex using appropriate protein recovery marker and evaluate functional activity of human cortex microsomes. Cytochrome P450 (CYP) content and glucose-6-phosphatase (G6Pase) activity were used as microsomal protein markers, whereas glutathione-S-transferase activity was a cytosolic marker. Functional activity of human microsomal samples was assessed by measuring mycophenolic acid glucuronidation. MPPGK was 33.9 and 44.0 mg/g in dog kidney cortex, and 41.1 and 63.6 mg/g in dog liver (n = 17), using P450 content and G6Pase activity, respectively. No trends were noted between kidney, liver, and intestinal scalars from the same animals. Species differences were evident, as human MPPGK and CPPGK were 26.2 and 53.3 mg/g in kidney cortex (n = 38), respectively. MPPGK was 2-fold greater than the commonly used in vitro-in vivo extrapolation scalar; this difference was attributed mainly to tissue source (mixed kidney regions versus cortex). Robust human MPPGK and CPPGK scalars were measured for the first time. The work emphasized the importance of regional differences (cortex versus whole kidney-specific MPPGK, tissue weight, and blood flow) and a need to account for these to improve assessment of renal metabolic clearance and its extrapolation to in vivo.


Assuntos
Citosol/metabolismo , Córtex Renal/metabolismo , Microssomos/metabolismo , Animais , Sistema Enzimático do Citocromo P-450/metabolismo , Citosol/química , Cães , Feminino , Glucose-6-Fosfatase/metabolismo , Humanos , Córtex Renal/química , Masculino , Microssomos/química , Especificidade da Espécie
4.
Toxicol Appl Pharmacol ; 320: 17-25, 2017 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-28189652

RESUMO

BACKGROUND: Individuals without occupational exposure are exposed to mercury (Hg) from diet and dental amalgam. The kidney is a critical organ, but there is limited information regarding the relationship between Hg in kidney (K-Hg), urine (U-Hg), blood (B-Hg), and plasma (P-Hg). OBJECTIVES: The aim was to determine the relationship between K-Hg, U-Hg, B-Hg, and P-Hg among environmentally exposed individuals, estimate the biological half-time of K-Hg, and provide information useful for biomonitoring of Hg. METHODS: Kidney cortex biopsies and urine and blood samples were collected from 109 living kidney donors. Total Hg concentrations were determined and the relationships between K-Hg, U-Hg, P-Hg, and B-Hg were investigated in regression models. The half-time of K-Hg was estimated from the elimination constant. RESULTS: There were strong associations between K-Hg and all measures of U-Hg and P-Hg (rp=0.65-0.84, p<0.001), while the association with B-Hg was weaker (rp=0.29, p=0.002). Mean ratios between K-Hg (in µg/g) and U-Hg/24h (in µg) and B-Hg (in µg/L) were 0.22 and 0.19 respectively. Estimates of the biological half-time varied between 30 and 92days, with significantly slower elimination in women. Adjusting overnight urine samples for dilution using urinary creatinine resulted in less bias in relation to K-Hg or U-Hg/24h, compared with other adjustment techniques. CONCLUSIONS: The relationship between K-Hg and U-Hg is approximately linear. K-Hg can be estimated using U-Hg and gender. Women have longer half-time of Hg in kidney compared to men. Adjusting overnight urine samples for creatinine concentration resulted in less bias.


Assuntos
Exposição Ambiental/efeitos adversos , Monitoramento Ambiental/métodos , Córtex Renal/metabolismo , Mercúrio/sangue , Mercúrio/urina , Adulto , Idoso , Biomarcadores/análise , Biomarcadores/sangue , Biomarcadores/química , Biomarcadores/urina , Amálgama Dentário/efeitos adversos , Feminino , Humanos , Córtex Renal/química , Córtex Renal/efeitos dos fármacos , Modelos Lineares , Masculino , Mercúrio/análise , Mercúrio/toxicidade , Pessoa de Meia-Idade , Exposição Ocupacional/efeitos adversos , Doadores de Tecidos , Adulto Jovem
5.
Environ Geochem Health ; 39(4): 889-899, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27485407

RESUMO

Heavy metals, including cadmium (Cd), lead (Pb) and mercury (Hg) act as nephrotoxic agents, particularly in the renal cortex. The aim of the study was to determine the concentrations of Cd, Pb and Hg in kidneys removed from patients due to lesions of various etiologies and from patients after the rejection of transplanted kidneys. Additionally, we determined the influence of selected biological and environmental factors on the concentrations of toxic metals. The study material consisted of kidneys with tumor lesions (n = 27), without tumors (n = 7) and its extracted grafts (n = 10) obtained from patients belongs to the north-western areas of Poland. The determined metal concentrations in the renal cortex and medulla may be arranged in the following descending order: Cd > Pb > Hg. The highest concentrations of Cd and Hg were found in the cortex, while the maximum content Pb was observed in the medulla. Significant correlations were found in the concentrations of the same metals between cortex and medulla and between Pb and Hg in the renal medulla. Pb content was higher in the renal medulla of men than in the cortex of the elderly (above 60 years of age). The highest concentrations of Pb and Hg were found in the cortex and medulla, of the kidneys had not neoplastic changes, and lower content of these metals were found in the extracted kidney grafts. In summary, renal grafts accumulate less heavy metals than cancerous kidneys, what could have been caused by immunosuppressors taken by the graft recipients. Moreover, sex, age and smoking are key factors responsible for xenobiotics concentrations.


Assuntos
Cádmio/análise , Córtex Renal/química , Medula Renal/química , Neoplasias Renais/química , Chumbo/análise , Mercúrio/análise , Transplantes/química , Feminino , Humanos , Córtex Renal/patologia , Medula Renal/patologia , Masculino , Polônia
6.
J Proteome Res ; 15(12): 4722-4730, 2016 12 02.
Artigo em Inglês | MEDLINE | ID: mdl-27809536

RESUMO

Here we assessed the ability of an automated sample preparation device equipped with disposable microcolumns to prepare mass-limited samples for high-sensitivity quantitative proteomics, using both label-free and isobaric labeling approaches. First, we compared peptide label-free quantification reproducibility for 1.5-150 µg of cell lysates and found that labware preconditioning was essential for reproducible quantification of <7.5 µg digest. Second, in-solution and on-column tandem mass tag (TMT) labeling protocols were compared and optimized for 1 µg of sample. Surprisingly, standard methods for in-solution and on-column labeling showed poor TMT labeling (50-85%); however, novel optimized and automated protocols restored efficient labeling to >98%. Third, compared with a single long gradient experiment, a simple robotized high-pH fractionation protocol using only 6 µg of starting material doubled the number of unique peptides and increased proteome coverage 1.43-fold. To facilitate the analysis of heterogeneous tissue samples, such as those obtained from laser capture microdissection, a modified BCA protein assay was developed that consumes and detects down to 15 ng of protein. As a proof-of-principle, the modular automated workflow was applied to 0.5 and 1 mm2 mouse kidney cortex and medulla microdissections to show the method's potential for real-life small sample sources and to create kidney substructure-specific proteomes.


Assuntos
Rim/ultraestrutura , Proteoma/análise , Proteômica/métodos , Animais , Rim/química , Córtex Renal/química , Medula Renal/química , Microdissecção e Captura a Laser , Camundongos , Reprodutibilidade dos Testes , Tamanho da Amostra , Coloração e Rotulagem
7.
Clin Exp Nephrol ; 20(1): 39-49, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26072732

RESUMO

BACKGROUND: Emerging evidence has linked mitochondrial dysfunction to the pathogenesis of many renal disorders, including acute kidney injury, sepsis and even chronic kidney disease. Proteomics is a powerful tool in elucidating the role of mitochondria in renal pathologies. Since the pig is increasingly recognized as a major mammalian model for translational research, the lack of physiological proteome data of large mammals prompted us to examine renal mitochondrial proteome in porcine kidney cortex and medulla METHODS: Kidneys were obtained from six healthy pigs. Mitochondria from cortex and medulla were isolated using differential centrifugation and proteome maps of cortical and medullar mitochondria were constructed using two-dimensional gel electrophoresis (2DE). Protein spots with significant difference between mitochondrial fraction of renal cortex and medulla were identified by mass spectrometry. RESULTS: Proteomic analysis identified 81 protein spots. Of these spots, 41 mitochondrial proteins were statistically different between renal cortex and medulla (p < 0.05). Protein spots containing enzymes of beta oxidation, amino acid metabolism, and gluconeogenesis were predominant in kidney cortex mitochondria. Spots containing tricarboxylic acid cycle enzymes and electron transport system proteins, proteins maintaining metabolite transport and mitochondrial translation were more abundant in medullar mitochondria. CONCLUSION: This study provides the first proteomic profile of porcine kidney cortex and medullar mitochondrial proteome. Different protein expression pattern reflects divergent functional metabolic role of mitochondria in various kidney compartments. Our study could serve as a useful reference for further porcine experiments investigating renal mitochondrial physiology under various pathological states.


Assuntos
Córtex Renal/química , Medula Renal/química , Mitocôndrias/química , Proteínas Mitocondriais/análise , Proteômica/métodos , Pesquisa Translacional Biomédica/métodos , Animais , Eletroforese em Gel Bidimensional , Feminino , Masculino , Modelos Animais , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Sus scrofa , Espectrometria de Massas em Tandem
8.
Mol Gen Mikrobiol Virusol ; 33(2): 38-41, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26182666

RESUMO

Sphingomyelin synthase 1 (SMS 1) catalyzes sphingomyelin biosynthesis in eukaryotic cells. We previously studied the structure of the human SGMS1 gene, which encodes the enzyme and its numerous transcripts. The tissue-specific expression of the transcripts was also described. Analysis of the SMS1 protein expression in human tissues using immunoblotting of tissue extracts prepared in the RIPA (Radio Immuno-Precipitation Assay) buffer revealed a weak signal in renal cortex, testis, lung, and no signal in placenta and lymphatic node. In this work, a new method of preparation of the tissue protein extracts enriched with SMS1 was suggested. The method based on the consecutive extraction with a buffer containing 0.05 and 1 mg/ml of the Quillaja saponaria saponin allowed SMS1 to be detected in all tissues tested. The SMS1 content in the saponin extract of kidney cortex is about 12-fold higher compared to the RIPA extraction procedure.


Assuntos
Bioquímica/métodos , Proteínas de Membrana/análise , Proteínas de Membrana/química , Proteínas do Tecido Nervoso/análise , Proteínas do Tecido Nervoso/química , Extratos de Tecidos/química , Transferases (Outros Grupos de Fosfato Substituídos)/análise , Transferases (Outros Grupos de Fosfato Substituídos)/química , Soluções Tampão , Fracionamento Químico , Humanos , Immunoblotting/métodos , Córtex Renal/química , Quillaja/química , Saponinas/química
9.
Function (Oxf) ; 5(4)2024 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-38985001

RESUMO

A detailed knowledge of the lipid composition of components of nephrons is crucial for understanding physiological processes and the development of kidney diseases. However, the lipidomic composition of kidney tubular segments is unknown. We manually isolated the proximal convoluted tubule (PCT), the cortical thick ascending limb of Henle's loop, and the cortical collecting duct from 5 lean and obese mice and subjected the samples to shotgun lipidomics analysis by high-resolution mass spectrometry acquisition. Across all samples, more than 500 lipid species were identified, quantified, and compared. We observed significant compositional differences among the 3 tubular segments, which serve as true signatures. These intrinsic lipidomic features are associated with a distinct proteomic program that regulates highly specific physiological functions. The distinctive lipidomic features of each of the 3 segments are mostly based on the relative composition of neutral lipids, long-chain polyunsaturated fatty acids, sphingolipids, and ether phospholipids. These features support the hypothesis of a lipotype assigned to specific tubular segments. Obesity profoundly impacts the lipotype of PCT. In conclusion, we present a comprehensive lipidomic analysis of 3 cortical segments of mouse kidney tubules. This valuable resource provides unparalleled detail that enhances our understanding of tubular physiology and the potential impact of pathological conditions.


Assuntos
Lipidômica , Animais , Camundongos , Camundongos Endogâmicos C57BL , Masculino , Obesidade/metabolismo , Túbulos Renais Proximais/metabolismo , Córtex Renal/metabolismo , Córtex Renal/química , Lipídeos/análise , Metabolismo dos Lipídeos/fisiologia , Esfingolipídeos/metabolismo
10.
Toxicol Appl Pharmacol ; 268(3): 286-93, 2013 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-23454399

RESUMO

INTRODUCTION: Cadmium (Cd) is toxic to the kidney and a major part of the body burden occurs here. Cd in urine (U-Cd) and blood (B-Cd) are widely-used biomarkers for assessing Cd exposure or body burden. However, empirical general population data on the relationship between Cd in kidney (K-Cd), urine, and blood are scarce. Our objectives were to determine the relationship between cadmium in kidney, urine, and blood, and calculate the elimination half-time of Cd from the kidney. METHODS: Kidney cortex biopsies, urine, and blood samples were collected from 109 living kidney donors. Cd concentrations were determined and the relationships between K-Cd, U-Cd, and B-Cd were investigated in regression models. The half-time of K-Cd was estimated from the elimination constant. RESULTS: There was a strong association between K-Cd and U-Cd adjusted for creatinine (rp=0.70, p<0.001), while the association with B-Cd was weaker (rp=0.44, p<0.001). The relationship between K-Cd and U-Cd was nonlinear, with slower elimination of Cd at high K-Cd. Estimates of the K-Cd half-time varied between 18 and 44years. A K-Cd of 25µg/g corresponds to U-Cd of 0.42µg/g creatinine in overnight urine (U-Cd/K-Cd ratio: about 1:60). Multivariate models showed Cd in blood and urinary albumin as determinants for U-Cd excretion. DISCUSSION: In healthy individuals with low-level Cd exposure, there was a strong correlation between Cd in kidney and urine, especially after adjustment for creatinine. Urinary Cd was also affected by Cd in blood and urinary albumin. Previous estimates of the U-Cd/K-Cd ratio may underestimate K-Cd at low U-Cd.


Assuntos
Cádmio/sangue , Cádmio/urina , Exposição Ambiental , Rim/metabolismo , Doadores de Tecidos , Adulto , Idoso , Biomarcadores/sangue , Biomarcadores/metabolismo , Biomarcadores/urina , Exposição Ambiental/análise , Feminino , Humanos , Rim/química , Córtex Renal/química , Córtex Renal/metabolismo , Masculino , Pessoa de Meia-Idade , Adulto Jovem
11.
Toxicol Pathol ; 41(5): 779-94, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23136149

RESUMO

Hexachloro-1:3-butadiene (HCBD) causes segment-specific injury to the proximal renal tubule. A time course study of traditional and more recently proposed urinary biomarkers was performed in male Hanover Wistar rats receiving a single intraperitoneal (ip) injection of 45 mg/kg HCBD. Animals were killed on days 1, 2, 3, 4, 5, 6, 7, 10, 14, and 28 postdosing and the temporal response of renal biomarkers was characterized using kidney histopathology, urinary and serum biochemistry, and gene expression. Histopathologic evidence of tubular degeneration was seen from day 1 until day 3 postdosing and correlated with increased urinary levels of α-glutathione S-transferase (α-GST), albumin, glucose, and kidney injury molecule-1 (KIM-1), and increased gene expression of KIM-1, NAD(P)H dehydrogenase, quinone 1, and heme oxygenase (decycling) 1. Histopathologic evidence of tubular regeneration was seen from day 2 postdosing and correlated with raised levels of urinary KIM-1 and osteopontin and increased gene expression of KIM-1 and annexin A7. Traditional renal biomarkers generally demonstrated low sensitivity. It is concluded that in rat proximal tubular injury, measurement of a range of renal biomarkers, in conjunction with gene expression analysis, provides an understanding of the extent of degenerative changes induced in the kidney and the process of regeneration.


Assuntos
Injúria Renal Aguda/induzido quimicamente , Injúria Renal Aguda/urina , Butadienos/toxicidade , Injúria Renal Aguda/genética , Injúria Renal Aguda/patologia , Animais , Biomarcadores/análise , Biomarcadores/metabolismo , Biomarcadores/urina , Expressão Gênica , Córtex Renal/química , Córtex Renal/efeitos dos fármacos , Córtex Renal/metabolismo , Córtex Renal/patologia , Masculino , Estresse Oxidativo/genética , Ratos , Ratos Wistar
12.
Kidney Int ; 81(6): 559-67, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22071594

RESUMO

Endemic (Balkan) nephropathy is a chronic tubulointerstitial disease frequently accompanied by urothelial cell carcinomas of the upper urinary tract. This disorder has recently been linked to exposure to aristolochic acid, a powerful nephrotoxin and human carcinogen. Following metabolic activation, aristolochic acid reacts with genomic DNA to form aristolactam-DNA adducts that generate a unique TP53 mutational spectrum in the urothelium. The aristolactam-DNA adducts are concentrated in the renal cortex, thus serving as biomarkers of internal exposure to aristolochic acid. Here, we present molecular epidemiologic evidence relating carcinomas of the upper urinary tract to dietary exposure to aristolochic acid. DNA was extracted from the renal cortex and urothelial tumor tissue of 67 patients that underwent nephroureterectomy for carcinomas of the upper urinary tract and resided in regions of known endemic nephropathy. Ten patients from nonendemic regions with carcinomas of the upper urinary tract served as controls. Aristolactam-DNA adducts were quantified by (32)P-postlabeling, the adduct was confirmed by mass spectrometry, and TP53 mutations in tumor tissues were identified by chip sequencing. Adducts were present in 70% of the endemic cohort and in 94% of patients with specific A:T to T:A mutations in TP53. In contrast, neither aristolactam-DNA adducts nor specific mutations were detected in tissues of patients residing in nonendemic regions. Thus, in genetically susceptible individuals, dietary exposure to aristolochic acid is causally related to endemic nephropathy and carcinomas of the upper urinary tract.


Assuntos
Ácidos Aristolóquicos/efeitos adversos , Nefropatia dos Bálcãs/induzido quimicamente , Carcinógenos Ambientais/efeitos adversos , Carcinoma/induzido quimicamente , Adutos de DNA/análise , Exposição Ambiental , Córtex Renal/efeitos dos fármacos , Neoplasias Urológicas/induzido quimicamente , Adulto , Idoso , Idoso de 80 Anos ou mais , Ácidos Aristolóquicos/metabolismo , Nefropatia dos Bálcãs/diagnóstico , Nefropatia dos Bálcãs/epidemiologia , Nefropatia dos Bálcãs/genética , Nefropatia dos Bálcãs/metabolismo , Biomarcadores/análise , Biotransformação , Bósnia e Herzegóvina/epidemiologia , Carcinógenos Ambientais/metabolismo , Carcinoma/diagnóstico , Carcinoma/epidemiologia , Carcinoma/genética , Carcinoma/metabolismo , Estudos de Casos e Controles , Croácia/epidemiologia , Análise Mutacional de DNA , Dieta , Monitoramento Ambiental/métodos , Monitoramento Epidemiológico , Feminino , Predisposição Genética para Doença , Humanos , Córtex Renal/química , Córtex Renal/patologia , Masculino , Espectrometria de Massas , Pessoa de Meia-Idade , Epidemiologia Molecular , Mutação , Características de Residência , Medição de Risco , Fatores de Risco , Sérvia/epidemiologia , Proteína Supressora de Tumor p53/genética , Neoplasias Urológicas/diagnóstico , Neoplasias Urológicas/epidemiologia , Neoplasias Urológicas/genética , Neoplasias Urológicas/metabolismo
13.
J Proteome Res ; 9(8): 4306-12, 2010 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-20568695

RESUMO

We describe a method for ratio estimations in (18)O-water labeling experiments acquired from low resolution isotopically resolved data. The method is implemented in a software package specifically designed for use in experiments making use of zoom-scan mode data acquisition. Zoom-scan mode data allow commonly used ion trap mass spectrometers to attain isotopic resolution, which makes them amenable to use in labeling schemes such as (18)O-water labeling, but algorithms and software developed for high resolution instruments may not be appropriate for the lower resolution data acquired in zoom-scan mode. The use of power spectrum analysis is proposed as a general approach that may be uniquely suited to these data types. The software implementation uses a power spectrum to remove high-frequency noise and band-filter contributions from coeluting species of differing charge states. From the elemental composition of a peptide sequence, we generate theoretical isotope envelopes of heavy-light peptide pairs in five different ratios; these theoretical envelopes are correlated with the filtered experimental zoom scans. To automate peptide quantification in high-throughput experiments, we have implemented our approach in a computer program, MassXplorer. We demonstrate the application of MassXplorer to two model mixtures of known proteins and to a complex mixture of mouse kidney cortical extract. Comparison with another algorithm for ratio estimations demonstrates the increased precision and automation of MassXplorer.


Assuntos
Algoritmos , Marcação por Isótopo/métodos , Proteínas/análise , Proteômica/métodos , Software , Análise Espectral/métodos , Espectrometria de Massas em Tandem/métodos , Animais , Bovinos , Cromatografia Líquida , Biologia Computacional/métodos , Citocromos c/análise , Cavalos , Córtex Renal/química , Camundongos , Isótopos de Oxigênio/análise , Proteínas/metabolismo , Soroalbumina Bovina/análise
14.
Am J Physiol Renal Physiol ; 298(6): F1323-31, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20219825

RESUMO

The renal proximal convoluted tubule is the primary site of water, electrolyte and nutrient reabsorption and of active secretion of selected molecules. Proteins in the apical brush-border membrane facilitate these functions and initiate some of the cellular responses to altered renal physiology. The current study uses two-dimensional liquid chromatography/mass spectrometry to compare brush border membrane vesicles isolated from rat renal cortex (BBMV(CTX)) and from purified proximal convoluted tubules (BBMV(PCT)). Both proteomic data and Western blot analysis indicate that the BBMV(CTX) contain apical membrane proteins from cortical cells other than the proximal tubule. This heterogeneity was greatly reduced in the BBMV(PCT). Proteomic analysis identified 193 proteins common to both samples, 21 proteins unique to BBMV(CTX), and 57 proteins unique to BBMV(PCT). Spectral counts were used to quantify relative differences in protein abundance. This analysis identified 42 and 50 proteins that are significantly enriched (p values

Assuntos
Córtex Renal/química , Túbulos Renais Proximais/química , Proteínas de Membrana/isolamento & purificação , Proteômica , Animais , Biomarcadores/análise , Western Blotting , Centrifugação com Gradiente de Concentração , Cromatografia Líquida , Bases de Dados de Proteínas , Masculino , Microvilosidades/química , Proteômica/métodos , Ratos , Ratos Sprague-Dawley , Reprodutibilidade dos Testes , Espectrometria de Massas em Tandem , gama-Glutamiltransferase/isolamento & purificação
15.
Nitric Oxide ; 23(1): 34-41, 2010 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-20371384

RESUMO

Maternal undernutrition can cause reduced nephron number and glomerular hypertrophy, consequently leading to adult kidney disease. We intended to elucidate whether NO deficiency evolves to kidney disease vulnerability in offspring from mothers with caloric restriction diets and whether maternal L-citrulline (L-Cit) supplementation can prevent this. Using a rat model with 50% caloric restriction, four groups of 3-month-old male offspring were sacrificed to determine their renal outcome: control, caloric restriction (CR), control treated with 0.25% L-citrulline solution during the whole period of pregnancy and lactation (Cit), and CR treated in the same way (CR+Cit group). The CR group had low nephron numbers, increased glomerular diameter, and an increased plasma creatinine level compared with the control group. Maternal L-Cit supplementation prevented these effects. The CR+Cit and Cit groups developed hypertension beginning at 4 and 8weeks of age, respectively. Plasma asymmetric and symmetric dimethylarginine (ADMA and SDMA) levels were increased, but L-arginine/ADMA ratios (AAR) were decreased in the CR group vs the control group. This was prevented by maternal L-Cit supplementation. Renal cortical neuronal NOS-alpha (nNOSalpha) protein abundance was significantly decreased in the Cit and CR+Cit groups. Collectively, reduced nephron number, reduced renal nNOSalpha expression, increased ADMA, and decreased AAR contribute to the developmental programming of adult kidney disease and hypertension. Although maternal L-Cit supplementation prevents caloric restriction-induced low nephron number and renal dysfunction, it also induces hypertension.


Assuntos
Pressão Sanguínea/efeitos dos fármacos , Citrulina/farmacologia , Rim/efeitos dos fármacos , Exposição Materna , Óxido Nítrico/metabolismo , Análise de Variância , Animais , Animais Recém-Nascidos , Arginina/análogos & derivados , Arginina/sangue , Western Blotting , Peso Corporal/efeitos dos fármacos , Restrição Calórica , Citrulina/administração & dosagem , Citrulina/análise , Citrulina/sangue , Feminino , Histocitoquímica , Rim/química , Córtex Renal/química , Córtex Renal/efeitos dos fármacos , Glomérulos Renais/efeitos dos fármacos , Masculino , Néfrons/efeitos dos fármacos , Gravidez , Ratos , Transdução de Sinais
16.
J Biomed Sci ; 16: 82, 2009 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-19747398

RESUMO

Metastatic renal cell carcinoma (RCC) is highly resistant to conventional systemic treatments, including chemotherapy, radiotherapy and hormonal therapies. Previous studies have shown over-expression of EGFR is associated with high grade tumors and a worse prognosis. Recent studies suggest anticancer therapies targeting the EGFR pathway have shown promising results in clinical trials of RCC patients. Therefore, characterization of the level and localization of EGFR expression in RCC is important for target-dependent therapy. In this study, we investigated the clinical significance of cellular localization of EGFR in human normal renal cortex and RCC. RCC and adjacent normal kidney tissues of 63 patients were obtained for characterization of EGFR expression. EGFR protein expression was assessed by immunohistochemistry on a scale from 0 to 300 (percentage of positive cells x staining intensity) and Western blotting. EGFR membranous staining was significantly stronger in RCC tumors than in normal tissues (P < 0.001). In contrast, EGFR cytoplasmic staining was significantly higher in normal than in tumor tissues (P < 0.001). The levels of membranous or cytoplasmic EGFR expression in RCC tissues were not correlated with sex, tumor grade, TNM stage or overall survival (P > 0.05). These results showed abundant expression of membranous EGFR in RCC, and abundant expression of cytoplasmic EGFR in normal tissues. EGFR expression in RCC was mostly located in the cell membrane, whereas the EGFR expression in normal renal tissues was chiefly seen in cytoplasm. Our results suggest different locations of EGFR expression may be associated with human renal tumorigenesis.


Assuntos
Carcinoma de Células Renais/química , Membrana Celular/química , Citoplasma/química , Receptores ErbB/análise , Córtex Renal/química , Neoplasias Renais/química , Proteínas de Membrana/análise , Proteínas de Neoplasias/análise , Idoso , Carcinoma de Células Renais/etiologia , Carcinoma de Células Renais/mortalidade , Carcinoma de Células Renais/cirurgia , Carcinoma de Células Renais/ultraestrutura , Feminino , Humanos , Estimativa de Kaplan-Meier , Córtex Renal/ultraestrutura , Neoplasias Renais/etiologia , Neoplasias Renais/mortalidade , Neoplasias Renais/cirurgia , Neoplasias Renais/ultraestrutura , Masculino , Pessoa de Meia-Idade , Nefrectomia , Especificidade de Órgãos
17.
Bull Environ Contam Toxicol ; 82(6): 749-55, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19277441

RESUMO

This study aims to investigate the effect of 2,4-dichlorophenoxyacetic acid (2,4-D) on rat kidney cortex histology. Oral exposure of rats to 2,4-D for 28 days resulted in decreases in body weight gain and kidney weight. Histological examination showed degeneration in renal corpuscles and podocytes; vacuolization in the glomerulus with disintegration of the basal membrane; tissue edema; vacuolization, cystic dilation and invagination of the basal laminae in the tubular structures; dilation and congestion in renal corpuscular vessels and marked decrease in glomerular and stromal fibronectin reaction; suggesting that subacute 2,4-D administration induces dose-dependent histopathological degenerative effects in rat kidney cortex.


Assuntos
Ácido 2,4-Diclorofenoxiacético/toxicidade , Herbicidas/toxicidade , Córtex Renal/efeitos dos fármacos , Córtex Renal/patologia , Animais , Imuno-Histoquímica , Córtex Renal/química , Masculino , Ratos , Ratos Wistar , Testes de Toxicidade Crônica
18.
Kidney Int ; 73(4): 456-64, 2008 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18046316

RESUMO

Despite similar molecular structures, the growth-related sodium/phosphate cotransporter NaPiIIc is regulated differently than the main NaPiIIa phosphate transporter. Using two-hybrid systems and immunoprecipitation, we identified several proteins that interact with NaPiIIc that might account for this differential regulation. NaPiIIc interacted with the PDZ domain-containing sodium-hydrogen exchange-regulating factor (NHERF) 1 and NHERF3 through novel binding motifs in its C terminus. NaPiIIc from brush-border membranes coprecipitated with both NHERF1 and NHERF3, with more NHERF3 co-precipitated in rats fed a low-phosphorus diet. NaPiIIc colocalizes with both NHERF1 and NHERF3 in brush-border membranes of rats fed either a low- or high-phosphorus diet. When mouse NaPiIIc was transfected into opossum kidney cells, it was localized mainly in apical microvilli and the trans-Golgi. Both confocal and total internal reflection microscopy show that NaPiIIc colocalizes with NHERF1 and NHERF3 in the apical microvilli, and this was not altered by truncation of the last three amino acids of NaPiIIc. Interactions of NaPiIIc with NHERF1 and NHERF3 were modulated by the membrane-associated 17 kDa protein (MAP17) similarly to NaPiIIa, but only the MAP17-NaPiIIc-NHERF3 complexes were internalized to the trans-Golgi. Our study shows that NaPiIIc interacts with a limited number of PDZ domain proteins, and the mechanisms and consequences of such interactions differ from those of NaPiIIa.


Assuntos
Córtex Renal/metabolismo , Domínios PDZ , Fosfoproteínas/metabolismo , Trocadores de Sódio-Hidrogênio/metabolismo , Proteínas Cotransportadoras de Sódio-Fosfato Tipo IIc/metabolismo , Animais , Dieta , Biblioteca Gênica , Imunoprecipitação , Córtex Renal/química , Proteínas de Membrana/metabolismo , Camundongos , Fosfoproteínas/análise , Fosfoproteínas/genética , Fósforo/administração & dosagem , Mapeamento de Interação de Proteínas , Ratos , Trocadores de Sódio-Hidrogênio/análise , Trocadores de Sódio-Hidrogênio/genética , Proteínas Cotransportadoras de Sódio-Fosfato Tipo IIa/metabolismo , Proteínas Cotransportadoras de Sódio-Fosfato Tipo IIc/análise , Proteínas Cotransportadoras de Sódio-Fosfato Tipo IIc/genética , Transfecção , Técnicas do Sistema de Duplo-Híbrido
19.
Expert Rev Proteomics ; 5(1): 29-43, 2008 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18282122

RESUMO

Aquaporin (AQP)1 belongs to a ubiquitous family of water channel proteins characterized by sequence similarity and the presence of two NPA (Asp-Pro-Ala) motifs existing in almost all organs and tissues. Currently, 13 human AQPs are known and they are divided into two subgroups according to their ability to transport only water molecules, such as AQP1, or also glycerol and other small solutes. The genomic, structural and functional aspects of AQP1 are briefly described. An in-depth discussion is devoted to proteomic approaches that are useful for identifying and characterizing AQP1, mainly through electrophoretic techniques combined with different extraction procedures followed by mass spectrometry analysis. Moreover, the relevance of AQP1 in human diseases is also explained. Its role in human tumors and, in particular, those of the kidney (e.g., clear cell renal carcinoma) is discussed.


Assuntos
Aquaporina 1/análise , Proteômica/métodos , Sequência de Aminoácidos , Animais , Aquaporina 1/química , Aquaporina 1/genética , Aquaporina 1/fisiologia , Encéfalo/metabolismo , Carcinoma de Células Renais/metabolismo , Sistema Digestório/metabolismo , Eletroforese/métodos , Glicosilação , Humanos , Córtex Renal/química , Nefropatias/metabolismo , Nefropatias/patologia , Neoplasias Renais/metabolismo , Mamíferos , Espectrometria de Massas/métodos , Modelos Moleculares , Dados de Sequência Molecular , Proteínas de Neoplasias/análise , Neoplasias/metabolismo , Conformação Proteica , Processamento de Proteína Pós-Traducional , Água/metabolismo
20.
Am J Hypertens ; 21(6): 639-43, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18437122

RESUMO

BACKGROUND: Recombinant human erythropoietin (rhEPO) increases blood pressure (BP) and the vascular production of endothelin-1 in renal failure rats. This study was designed to investigate the effect of rhEPO on BP and on the ET-1/ET(B)R system in rats with normal renal function. To further characterize the effect of rhEPO on the ET-1/ET(B)R system, we also studied heterozygous (+/-) ET(B)R knockout (KO) mice. METHODS: The animals received either the vehicle or rhEPO (100 U/kg subcutaneously three times per week). ET(B)R(+/-) mice were compared with ET(A)R(+/-) and wild-type (WT) mice. In rats, the ET(B)R mRNA expression was assessed in blood vessels as well as the vascular ET(B)R density using immunohistochemistry. In mice, ET-1 concentration was measured in the thoracic aorta. RESULTS: RhEPO administration increased hematocrit levels in all treated animals. This therapy had no effect on BP in normal rats, but it did increase vascular and renal cortex ET(B)R mRNA expression. Immunohistochemistry confirmed that the ET(B)R density was increased in blood vessel endothelium in these normal rats. In contrast, rhEPO increased BP in ET(B)R(+/-) mice and this pressor effect was associated with higher ET-1 concentrations in the thoracic aorta. CONCLUSIONS: RhEPO exerts a pleotropic effect on the endothelial ET-1/ET(B)R system. The increase in endothelial ET(B)R expression may contribute to maintaining normal BP during rhEPO administration in normal animals. Conversely, conditions with deficient ET(B)R expression, such as in ET(B)R(+/-) mice, may lead to hypertension while receiving the same therapy.


Assuntos
Pressão Sanguínea/efeitos dos fármacos , Endotelina-1/análise , Endotélio Vascular/química , Eritropoetina/farmacologia , Receptor de Endotelina B/análise , Animais , Aorta Torácica/química , Imuno-Histoquímica , Córtex Renal/química , Camundongos , RNA Mensageiro/análise , Receptor de Endotelina A/análise , Receptor de Endotelina B/genética , Proteínas Recombinantes
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