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1.
An Acad Bras Cienc ; 94(3): e20210917, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35920489

RESUMO

Molecular machines, as exemplified by the kinesin and microtubule system, are responsible for molecular transport in cells. The monitoring of the cellular machinery has attracted much attention in recent years, requiring sophisticated techniques such as optical tweezers, and dark field hyperspectral and fluorescence microscopies. It also demands suitable procedures for immobilization and labeling with functional agents such as dyes, plasmonic nanoparticles and quantum dots. In this work, microtubules were co-polymerized by incubating a tubulin mix consisting of 7 biotinylated tubulin to 3 rhodamine tubulin. Rhodamine provided the fluorescent tag, while biotin was the anchoring group for receiving streptavidin containing species. To control the microtubule alignment and consequently, the molecular gliding directions, functionalized iron oxide nanoparticles were employed in the presence of an external magnet field. Such iron oxide nanoparticles, (MagNPs) were previously coated with silica and (3-aminopro-pyl)triethoxysilane (APTS) and then modified with streptavidin (SA) for linking to the biotin-functionalized microtubules. In this way, the binding has been successfully performed, and the magnetic alignment probed by Inverted Fluorescence Microscopy. The proposed strategy has proved promising, as tested with one of the most important biological structures of the cellular machinery.


Assuntos
Biotina , Tubulina (Proteína) , Biotina/análise , Biotina/química , Biotina/metabolismo , Óxido Ferroso-Férrico/análise , Óxido Ferroso-Férrico/metabolismo , Fenômenos Magnéticos , Microscopia de Fluorescência , Microtúbulos/química , Microtúbulos/metabolismo , Rodaminas/análise , Rodaminas/metabolismo , Estreptavidina/análise , Estreptavidina/química , Estreptavidina/metabolismo , Tubulina (Proteína)/análise , Tubulina (Proteína)/metabolismo
2.
Anal Bioanal Chem ; 413(2): 555-564, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33156401

RESUMO

Hybrid material surfaces on microparticles are emerging as vehicles for many biomedical multiplexing applications. Functionalization of these hybrid surface microparticles to biomolecules presents unique challenges related to optimization of surface chemistries including uniformity, repeatability, and sample sparring. Hybrid interfaces between microlevel surfaces and individual biomolecules will provide different microenvironments impacting the surface functionalization optimization and efficiency. Here, we propose and validate the first demonstration of streptavidin adsorption-based antibody functionalization on unmodified, hybrid surface microparticles for in vitro analysis. We test this analytical technique and fabricate hybrid surface microparticles with a polystyrene core and aluminum oxide semi-coating. Additionally, we optimize the streptavidin-biotin functionalization chemistry in both assay implementation and sample sparring via analytical mass balances for these microparticles and subsequently conjugate anti-human CD11b antibodies. Result confirmation and characterization occurs from ultraviolet protein absorbance and ImageJ processing of fluorescence microscopy images. Additionally, we design and implement the multi-sectional imaging (MSI) approach to support functionalization uniformity on the hybrid surface microparticles. Finally, as a proof-of-concept performance, we validate anti-CD11b antibodies functionalization by visualizing hybrid surface microparticles conjugate to human neutrophils isolated from blood samples collected from potentially septic patients. Our study introduces and defines a category of functionalization for hybrid surface microparticles with the intent of minuscule sample volumes, low cost, and low environmental impact to be used for many cellular or proteomic in vitro multiplexing applications in the future. Graphical abstract.


Assuntos
Óxido de Alumínio/análise , Microesferas , Neutrófilos/metabolismo , Estreptavidina/análise , Adsorção , Biotina/química , Antígeno CD11b/análise , Humanos , Técnicas In Vitro , Microscopia de Fluorescência , Tamanho da Partícula , Poliestirenos , Propriedades de Superfície
3.
Anal Bioanal Chem ; 413(2): 585-597, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33184759

RESUMO

The toxic protein of ricin has drawn wide attention in recent years as a potential bioterrorism agent due to its high toxicity and wide availability. For the verification of the potential anti-terrorism activities, it is urgent for the quantification of ricin in food-related matrices. Here, a novel strategy of trypsin/Glu-C tandem digestion was introduced for quantitative detection of ricin marker peptides in several beverage matrices using isotope-labeled internal standard (IS)-mass spectrometry. The ricin in beverages was captured and enriched by biotinylated anti-ricin polyclonal antibodies conjugated to streptavidin magnetic beads. The purified ricin was cleaved using the developed trypsin/Glu-C tandem digestion method and then quantitatively detected by ultra-high-pressure liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) with isotope-labeled T7A and TG11B selected as IS. The use of trypsin/Glu-C digestion allows shorter peptides, which are more suitable for MS detection, to be obtained than the use of single trypsin digestion. Under the optimized tandem digestion condition, except for T7A in the A-chain, two resulting specific peptides of TG13A, TG28A from the A-chain and two of TG11B, TG33B from the B-chain were chosen as novel marker peptides with high MS response. The uniqueness of the selected marker peptides allows for unambiguous identification of ricin among its homologous proteins in a single run. The MS response of the four novel marker peptides is increased by more than 10 times compared with that of individual corresponding tryptic peptides. Both the marker peptides of A-chain T7A and B-chain TG11B were selected as quantitative peptides based on the highest MS response among the marker peptides from their individual chains. The limit of detection (LOD) of ricin is 0.1 ng/mL in PBS and 0.5 ng/mL in either milk or orange juice. The linear range of calibration curves for ricin were 0.5-300 ng/mL in PBS, 1.0-400 ng/mL in milk, and 1.0-250 ng/mL in orange juice. The method accuracy ranged between 82.6 and 101.8% for PBS, 88.9-105.2% for milk, and 95.3-118.7% for orange juice. The intra-day and inter-day precision had relative standard deviations (%RSD) of 0.3-9.4%, 0.7-8.9%, and 0.2-6.9% in the three matrices respectively. Furthermore, whether T7A or TG11B is used as a quantitative peptide, the quantitative results of ricin are consistent. This study provides not only a practical method for the absolute quantification of ricin in beverage matrices but also a new strategy for the investigation of illegal use of ricin in chemical weapon verification tasks such as OPCW biotoxin sample analysis exercises.


Assuntos
Bebidas/análise , Cromatografia Líquida de Alta Pressão/métodos , Ricina/análise , Espectrometria de Massas em Tandem/métodos , Tripsina/análise , Biotinilação , Calibragem , Marcação por Isótopo , Limite de Detecção , Magnetismo , Peptídeos/química , Controle de Qualidade , Reprodutibilidade dos Testes , Sensibilidade e Especificidade , Solventes , Estreptavidina/análise
4.
Anal Chem ; 92(3): 2460-2467, 2020 02 04.
Artigo em Inglês | MEDLINE | ID: mdl-31909984

RESUMO

The use of submicrometer capillaries for nanoelectrospray ionization of native proteins and protein complexes effectively reduces the number of nonspecific salt adducts to biological molecules, therefore increasing the apparent resolution of a mass spectrometer without any further instrument modifications or increased ion activation. However, the increased interaction between proteins and the surface of the capillary has been shown to promote protein expansion and therefore loss of native structure. Here, we compare the effect of micrometer and submicrometer sized capillaries on the native structures of the protein complexes streptavidin, concanavalin A, and C-reactive protein under charge reducing conditions. We observe that the use of submicrometer capillaries did not result in a significantly higher charge state distribution, indicative of expansion, when compared to micrometer sized capillaries for complexes in 100 mM ammonium acetate and 100 mM triethylammonium acetate and for streptavidin in 200 mM ammonium acetate with no charge reduction. Additionally, no significant differences in collision cross sections were observed using ion mobility mass spectrometry. Finally, the dissociation behaviors of protein complexes ionized using micrometer and submicrometer capillaries were compared to determine if any structural perturbation occurred during ionization. Protein complexes from both capillary sizes displayed similar surface-induced dissociation patterns at similar activation energies. The results suggest that submicrometer capillaries do not result in significant changes to protein complex structure under charge reducing conditions and may be used for native mass spectrometry experiments. Submicrometer capillaries can be used to resolve small mass differences of biological systems on a QTOF platform; however, a laser tip puller is required for pulling reproducible submicrometer capillaries, and disruption in spray due to clogging was observed for larger protein complexes.


Assuntos
Proteína C-Reativa/análise , Concanavalina A/análise , Estreptavidina/análise , Espectrometria de Mobilidade Iônica , Tamanho da Partícula , Espectrometria de Massas por Ionização por Electrospray , Propriedades de Superfície
5.
Anal Chem ; 92(10): 7218-7225, 2020 05 19.
Artigo em Inglês | MEDLINE | ID: mdl-32338885

RESUMO

Elucidating the structures and stabilities of proteins and their complexes is paramount to understanding their biological functions in cellular processes. Native mass spectrometry (MS) coupled with ion mobility spectrometry (IMS) is emerging as an important biophysical technique owing to its high sensitivity, rapid analysis time, and ability to interrogate sample complexity or heterogeneity and the ability to probe protein structure dynamics. Here, a commercial IMS-MS platform has been modified for static native ESI emitters and an extended mass-to-charge range (20 kDa m/z) and its performance capabilities and limits were explored for a range of protein and protein complexes. The results show new potential for this instrument platform for studies of large protein and protein complexes and provides a roadmap for extending the performance metrics for studies of even larger, more complex systems, namely, membrane protein complexes and their interactions with ligands.


Assuntos
Concanavalina A/análise , Frutose-Bifosfato Aldolase/análise , Estreptavidina/análise , Ubiquitina/análise , Frutose-Bifosfato Aldolase/metabolismo , Espectrometria de Mobilidade Iônica , Espectrometria de Massas , Conformação Proteica , Desdobramento de Proteína
6.
Anal Chem ; 92(5): 3627-3635, 2020 03 03.
Artigo em Inglês | MEDLINE | ID: mdl-32031784

RESUMO

Sensitive and specific quantification of protein biomarkers is important in medical diagnostics, academic research, and pharmaceutical development. However, multiple binding steps in conventional sandwich immunoassay protocols result in high assay hands-on-time and delayed results. This is particularly relevant for medical diagnostics, where assay turn-around-time can have an immense impact on patient outcomes. To address this limitation, we report the assembly of nanosensors prepared using DNA-antibody conjugates, which combine capture and detection antibody binding steps by facilitating rapid antigen capture. Following antigen binding, detection antibodies are released using chemically induced complex rearrangement. A panel of 12 chemical additives are characterized to identify melting point depressants capable of rapidly denaturing double stranded DNA (dsDNA) linkers, and 8 compounds are demonstrated to be capable of disrupting dsDNA while maintaining the integrity of protein binding. This technique is then validated for the measurement of the heart attack indicator cardiac troponin I and is shown to successfully combine antigen binding steps while also increasing detection sensitivity 42×. Linker-mediated immunoassays are also demonstrated to provide robust quantification in human serum and are shown to be compatible with each of the most commonly used immunoassay detection modalities.


Assuntos
Técnicas Biossensoriais/métodos , Imunoensaio/métodos , Nanotecnologia/métodos , Anticorpos/imunologia , Anticorpos/metabolismo , DNA/química , DNA/metabolismo , Desnaturação de Ácido Nucleico , Estreptavidina/análise
7.
Anal Chem ; 92(13): 8654-8659, 2020 07 07.
Artigo em Inglês | MEDLINE | ID: mdl-32525300

RESUMO

Aluminum has recently attracted considerable interest as a plasmonic material due to its unique optical properties, but most work has been limited to nanostructures. We report here SPR biosensing with aluminum thin-films using the standard Kretschmann configuration that has previously been dominated by gold films. Electron-beam physical vapor deposition (EBPVD)-prepared Al films oxidize in air to form a nanofilm of Al2O3, yielding robust stability for sensing applications in buffered solutions. FDTD simulations revealed a sharp plasmonic dip in the visible range that enables measurement of both angular shift and reflection intensity change at a fixed angle. Bulk and surface tests indicated that Al films exhibited superb sensitivity performance in both categories. Compared to Au, the Al/Al2O3 layer showed a marked effect of suppressing nonspecific binding from proteins in human serum. Further characterization indicated that Al film demonstrated a higher sensitivity and a wider working range than Au films when used for SPR imaging analysis. Combined with its economic and manufacturing benefits, the Al thin-film has the potential to become a highly advantageous plasmonic substrate to meet a wide range of biosensing needs in SPR configurations.


Assuntos
Alumínio/química , Técnicas Biossensoriais/métodos , Óxido de Alumínio/química , Animais , Biotina/química , Proteínas Sanguíneas/química , Proteínas Sanguíneas/metabolismo , Bovinos , Ouro/química , Humanos , Nanoestruturas/química , Refratometria , Soroalbumina Bovina/química , Estreptavidina/análise , Ressonância de Plasmônio de Superfície/métodos
8.
Proc Natl Acad Sci U S A ; 114(39): 10367-10372, 2017 09 26.
Artigo em Inglês | MEDLINE | ID: mdl-28893984

RESUMO

Protein detection and quantification play critical roles in both basic research and clinical practice. Current detection platforms range from the widely used ELISA to more sophisticated, and more expensive, approaches such as digital ELISA. Despite advances, there remains a need for a method that combines the simplicity and cost-effectiveness of ELISA with the sensitivity and speed of modern approaches in a format suitable for both laboratory and rapid, point-of-care applications. Building on recent developments in DNA structural nanotechnology, we introduce the nanoswitch-linked immunosorbent assay (NLISA), a detection platform based on easily constructed DNA nanodevices that change conformation upon binding to a target protein with the results read out by gel electrophoresis. NLISA is surface-free and includes a kinetic-proofreading step for purification, enabling both enhanced sensitivity and reduced cross-reactivity. We demonstrate femtomolar-level detection of prostate-specific antigen in biological fluids, as well as reduced cross-reactivity between different serotypes of dengue and also between a single-mutation and wild-type protein. NLISA is less expensive, uses less sample volume, is more rapid, and, with no washes, includes fewer hands-on steps than ELISA, while also achieving superior sensitivity. Our approach also has the potential to enable rapid point-of-care assays, as we demonstrate by performing NLISA with an iPad/iPhone camera for imaging.


Assuntos
Técnicas de Imunoadsorção , Nanotecnologia/métodos , Antígeno Prostático Específico/análise , Proteínas Proto-Oncogênicas B-raf/análise , Estreptavidina/análise , Proteínas não Estruturais Virais/análise , Bioensaio/métodos , DNA/química , Vírus da Dengue/química , Vírus da Dengue/genética , Ensaio de Imunoadsorção Enzimática/métodos , Humanos , Sistemas Automatizados de Assistência Junto ao Leito
9.
J Am Chem Soc ; 141(29): 11721-11726, 2019 07 24.
Artigo em Inglês | MEDLINE | ID: mdl-31257869

RESUMO

For an assay to be most effective in point-of-care clinical analysis, it needs to be economical, simple, generalizable, and free from tedious workflows. While electrochemistry-based DNA sensors reduce instrumental costs and eliminate complicated procedures, there remains a need to address probe costs and generalizability, as numerous probes with multiple conjugations are needed to quantify a wide range of biomarkers. In this work, we have opened a route to circumvent complicated multiconjugation schemes using enzyme-catalyzed probe construction directly on the surface of the electrode. With this, we have created a versatile DNA nanostructure probe and validated its effectiveness by quantification of proteins (streptavidin, anti-digoxigenin, anti-tacrolimus) and small molecules (biotin, digoxigenin, tacrolimus) using the same platform. Tacrolimus, a widely prescribed immunosuppressant drug for organ transplant patients, was directly quantified with electrochemistry for the first time, with the assay range matching the therapeutic index range. Finally, the stability and sensitivity of the probe was confirmed in a background of minimally diluted human serum.


Assuntos
DNA/química , Técnicas Eletroquímicas/métodos , Eletrodos , Nanoestruturas/química , Proteínas/análise , Anticorpos/análise , Anticorpos/sangue , Biotina/análise , Calibragem , Digoxigenina/análise , Técnicas Eletroquímicas/instrumentação , Humanos , Ácidos Nucleicos Imobilizados/química , Limite de Detecção , Reprodutibilidade dos Testes , Estreptavidina/análise , Tacrolimo/sangue , Tacrolimo/imunologia
10.
Anal Chem ; 91(22): 14765-14772, 2019 11 19.
Artigo em Inglês | MEDLINE | ID: mdl-31638377

RESUMO

Noncovalent interactions between biomolecules are critical to their activity. Native mass spectrometry (MS) has enabled characterization of these interactions by preserving noncovalent assemblies for mass analysis, including protein-ligand and protein-protein complexes for a wide range of soluble and membrane proteins. Recent advances in native MS of lipoprotein nanodiscs have also allowed characterization of antimicrobial peptides and membrane proteins embedded in intact lipid bilayers. However, conventional native electrospray ionization (ESI) can disrupt labile interactions. To stabilize macromolecular complexes for native MS, charge reducing reagents can be added to the solution prior to ESI, such as triethylamine, trimethylamine oxide, and imidazole. Lowering the charge acquired during ESI reduces Coulombic repulsion that leads to dissociation, and charge reduction reagents may also lower the internal energy of the ions through evaporative cooling. Here, we tested a range of imidazole derivatives to discover improved charge reducing reagents and to determine how their chemical properties influence charge reduction efficacy. We measured their effects on a soluble protein complex, a membrane protein complex in detergent, and lipoprotein nanodiscs with and without embedded peptides, and used computational chemistry to understand the observed charge-reduction behavior. Together, our data revealed that hydrophobic substituents at the 2 position on imidazole can significantly improve both charge reduction and gas-phase stability over existing reagents. These new imidazole derivatives will be immediately beneficial for a range of native MS applications and provide chemical principles to guide development of novel charge reducing reagents.


Assuntos
Proteínas de Transporte de Cátions/análise , Proteínas de Escherichia coli/análise , Imidazóis/química , Lipoproteínas/análise , Estreptavidina/análise , Proteínas de Transporte de Cátions/química , Proteínas de Escherichia coli/química , Interações Hidrofóbicas e Hidrofílicas , Lipoproteínas/química , Nanoestruturas/análise , Nanoestruturas/química , Espectrometria de Massas por Ionização por Electrospray/métodos , Eletricidade Estática , Estreptavidina/química
11.
Analyst ; 145(1): 46-51, 2019 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-31755892

RESUMO

Development of a simple, fast, cost-efficient and sensitive approach for accurate protein analysis is of high significance due to its potential application in disease diagnosis and biomedicine research. Thus, we established a label-free fluorescence DNA walker for streptavidin detection based on terminal protection and dual enzyme assisted cleavage induced G-quadruplex/berberine conformation. In this paper, the swing arm probe and report probe were pre-assembled on gold nanoparticles. With the addition of a target, through the high-efficiency affinity between streptavidin and biotin in order to prevent the hydrolysis of exonuclease I, the swing arm probe which contains 8-17 DNAzyme cannot be destroyed and plays a role in the catalytic cleavage of the report probe, and the liberating fragment of the report probe which contains a specific sequence (5'-(TTAGGG)4) of G-quadruplex units can combine with berberine and shows an evident fluorescence signal enhancement. Our method, a sensitive and selective method of protein detection, achieves a 20 pM detection limit toward streptavidin. This developed DNA walker, which combines terminal protection and a dual enzyme assisted strategy, provides a prospective channel for streptavidin detection and should also be used for the design of biosensors in bio-detection and disease diagnosis.


Assuntos
Berberina/química , Sondas de DNA/química , DNA Catalítico/química , Quadruplex G , Estreptavidina/análise , Técnicas Biossensoriais/métodos , Biotina/química , Sondas de DNA/genética , DNA Catalítico/genética , Exodesoxirribonucleases/química , Ouro/química , Limite de Detecção , Nanopartículas Metálicas/química , Espectrometria de Fluorescência/métodos , Estreptavidina/química
12.
Nanotechnology ; 30(32): 324001, 2019 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-30986779

RESUMO

Silicon nanowire (Si NW) sensors have attracted great attention due to their ability to provide fast, low-cost, label-free, real-time detection of chemical and biological species. Usually configured as field effect transistors (FETs), they have already demonstrated remarkable sensitivity with high selectivity (through appropriate functionalisation) towards a large number of analytes in both liquid and gas phases. Despite these excellent results, Si NW FET sensors have not yet been successfully employed to detect single molecules of either a chemical or biological target species. Here we show that sensors based on silicon junctionless nanowire transistors (JNTs), the simplest possible transistors, are capable of detecting the protein streptavidin at a concentration as low as 580 zM closely approaching the single molecule level. This ultrahigh detection sensitivity is due to the intrinsic advantages of junctionless devices over conventional FETs. Apart from their superior functionality, JNTs are much easier to fabricate by standard microelectronic processes than transistors containing p-n junctions. The ability of JNT sensors to detect ultra-low concentrations (in the zeptomolar range) of target species, and their potential for low-cost mass production, will permit their deployment in numerous environments, including life sciences, biotechnology, medicine, pharmacology, product safety, environmental monitoring and security.


Assuntos
Técnicas Biossensoriais/métodos , Proteínas/análise , Transistores Eletrônicos , Técnicas Biossensoriais/instrumentação , Limite de Detecção , Nanofios/química , Silício/química , Estreptavidina/análise
13.
Phys Chem Chem Phys ; 21(13): 7061-7066, 2019 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-30874711

RESUMO

Plasmonic gold nanoparticles can be an efficient source of hot electrons that can transfer to adsorbed molecules for photochemistry, followed by broadening of the homogeneous localized surface plasmon resonance (LSPR) linewidth. Although chemical interface damping (CID) is one of the main decay processes, it is the most poorly understood damping mechanism in gold nanoparticles. Herein, to better understand CID and to find new functional groups that can induce CID as an alternative to thiol groups (-SH, sulfhydryl groups), we carried out scanning electron microscopy (SEM) correlated dark-field (DF) scattering studies of gold nanorods (AuNRs) at the single-particle level. We found that biotin with sulfur can lead to strong plasmon damping in single AuNRs. We chose biotin in this study because it is widely used as a linker that can selectively bind to streptavidin in many biological sensing experiments. We further demonstrated the possibility of real-time detection of biological molecules, specifically biotinylated BSA proteins, by means of CID in single AuNRs. Therefore, this study allows us to gain a deeper insight into how adsorbate molecules with sulfur affect CID, which is an important step toward developing a CID-based LSPR biosensor to detect real biological molecules having sulfur or thiol groups without interference from the medium dielectric constant in single AuNRs.


Assuntos
Ouro/química , Nanotubos/química , Estreptavidina/análise , Técnicas Biossensoriais/métodos , Biotina/química , Cor , Difusão Dinâmica da Luz/métodos , Tamanho da Partícula , Imagem Individual de Molécula/métodos , Compostos de Sulfidrila/química , Enxofre/química , Ressonância de Plasmônio de Superfície , Propriedades de Superfície
14.
Anal Chem ; 90(10): 6089-6095, 2018 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-29672026

RESUMO

We describe here a flow platform for quantifying the number of biomolecules on individual fluorescent nanoparticles. The platform combines line-confocal fluorescence detection with near nanoscale channels (1-2 µm in width and height) to achieve high single-molecule detection sensitivity and throughput. The number of biomolecules present on each nanoparticle was determined by deconvolving the fluorescence intensity distribution of single-nanoparticle-biomolecule complexes with the intensity distribution of single biomolecules. We demonstrate this approach by quantifying the number of streptavidins on individual semiconducting polymer dots (Pdots); streptavidin was rendered fluorescent using biotin-Alexa647. This flow platform has high-throughput (hundreds to thousands of nanoparticles detected per second) and requires minute amounts of sample (∼5 µL at a dilute concentration of 10 pM). This measurement method is an additional tool for characterizing synthetic or biological nanoparticles.


Assuntos
Nanopartículas/química , Polímeros/química , Estreptavidina/análise , Biotina/química , Fluorescência , Corantes Fluorescentes/química , Técnicas Analíticas Microfluídicas , Microscopia Confocal , Semicondutores
15.
Anal Chem ; 90(17): 10302-10310, 2018 09 04.
Artigo em Inglês | MEDLINE | ID: mdl-30070105

RESUMO

The sensitive detection of proteins is a key objective in many areas of biomolecular science, ranging from biophysics to diagnostics. However, sensing in complex biological fluids is hindered by nonspecific interactions with off-target species. Here, we describe and demonstrate an assay that utilizes both the chemical and physical properties of the target species to achieve high selectivity in a manner not possible by chemical complementarity alone, in complex media. We achieve this objective through a combinatorial strategy, by simultaneously exploiting free-flow electrophoresis for target selection, on the basis of electrophoretic mobility, and conventional affinity-based selection. In addition, we demonstrate amplification of the resultant signal by a catalytic DNA nanocircuit. This approach brings together the inherent solution-phase advantages of microfluidic sample handling with isothermal, enzyme-free signal amplification. With this method, no surface immobilization or washing steps are required, and our assay is well suited to monoepitopic targets, presenting advantages over conventional ELISA techniques.


Assuntos
Eletroforese em Microchip/métodos , Proteínas/análise , Anticorpos/imunologia , Biomarcadores/análise , Catálise , DNA Catalítico/química , DNA de Cadeia Simples/química , Cinética , Limite de Detecção , Sondas Moleculares/química , Ligação Proteica , Proteínas/imunologia , Estreptavidina/análise
16.
Chembiochem ; 19(7): 716-722, 2018 04 04.
Artigo em Inglês | MEDLINE | ID: mdl-29356232

RESUMO

A new modular nanoswitch was described for versatile, rapid (within 1 h), homogeneous, and sensitive protein detection. The system employs two hairpins (HP1 and HP2) that can be reciprocally recognized through the apical loop-loop interaction. HP2 possesses a conformation-switching stem-loop structure, with appended single-stranded tails on each end, which can hybridize with the recognition-element-conjugated DNA strands to construct a protein-responsive HP2 scaffold. It works according to a simple mix-and-detect assay format, with the first formation of a kissing complex between HP1 and HP2 scaffolds for fluorescence quenching, and then cascade propagation from steric strain through protein binding to the dissociation of the kissing complex for fluorescence recovery. The detection universality of such a modular nanoswitch was demonstrated by using three multivalent proteins, including anti-digoxigenin (Anti-Dig) antibody, streptavidin, and thrombin, with detection limits of 0.33, 0.17, and 0.5 nm, respectively.


Assuntos
Bioensaio/métodos , Técnicas Biossensoriais/métodos , DNA/química , Proteínas/análise , RNA/química , Anticorpos/análise , Anticorpos/metabolismo , Aptâmeros de Nucleotídeos/metabolismo , Biotina/metabolismo , DNA/genética , Fluorescência , Ouro/química , Sequências Repetidas Invertidas , Limite de Detecção , Nanopartículas Metálicas/química , Hibridização de Ácido Nucleico , Ligação Proteica , Proteínas/metabolismo , RNA/genética , Estreptavidina/análise , Estreptavidina/metabolismo , Trombina/análise , Trombina/metabolismo
17.
Anal Bioanal Chem ; 410(23): 5723-5730, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-30019083

RESUMO

Modulation of support wettability used for microarray format biosensing has led to an improvement of results. Hydrophobicity of glass chips was set by derivatizing with single vinyl organosilanes of different chain length and silane mixtures. Thiol-ene photochemical linking has been used as effective chemistry for covalent anchoring of thiolated probes. Lowest unspecific binding and highest signal intensity and SNR were obtained with large hydrocarbon chain (C22) silanes or a shorter one (C10) containing fluorine atoms. SNR resulting values are improved, reaching levels higher than 1500 in some cases, when using vinyl silanes modified with 1% C10 alkyl fluorinated one, because mild hydrophobicity was achieved (water contact angle ca. 110°) for all silanes, including the short C2 and C3, thus giving rise to smaller and better defined array spots. In addition, unspecific binding of reagents and targets was totally withdrawn. Hence, good-performing surfaces for biosensing applications can be built using appropriate organosilane reagent selection, including fluorinated ones. Graphical abstract ᅟ.


Assuntos
Técnicas Biossensoriais/métodos , Biotina/química , Química Click/métodos , Silanos/química , Compostos de Sulfidrila/química , Anticorpos/análise , Sítios de Ligação , Carbocianinas/análise , Corantes Fluorescentes/análise , Halogenação , Interações Hidrofóbicas e Hidrofílicas , Imunoensaio/métodos , Ligantes , Modelos Moleculares , Estreptavidina/análise , Molhabilidade
18.
Nano Lett ; 17(2): 1277-1281, 2017 02 08.
Artigo em Inglês | MEDLINE | ID: mdl-28088861

RESUMO

Label-free detection, analysis, and rapid tracking of nanoparticles is crucial for future ultrasensitive sensing applications, ranging from understanding of biological interactions to the study of size-dependent classical-quantum transitions. Yet optical techniques to distinguish nanoparticles directly among their background remain challenging. Here we present amplified interferometric scattering microscopy (a-iSCAT) as a new all-optical method capable of detecting individual nanoparticles as small as 15 kDa proteins that is equivalent to half a GFP. By balancing scattering and reflection amplitudes the interference contrast of the nanoparticle signal is amplified 1 to 2 orders of magnitude. Beyond high sensitivity, a-iSCAT allows high-speed image acquisition exceeding several hundreds of frames-per-second. We showcase the performance of our approach by detecting single Streptavidin binding events and by tracking single Ferritin proteins at 400 frames-per-second with 12 nm localization precision over seconds. Moreover, due to its extremely simple experimental realization, this advancement finally enables a cheap and routine implementation of label-free all-optical single nanoparticle detection platforms with sensitivity operating at the single protein level.


Assuntos
Técnicas Biossensoriais/métodos , Proteínas de Ligação ao Ferro/análise , Microscopia de Interferência/métodos , Nanopartículas/química , Receptores de Superfície Celular/análise , Estreptavidina/análise , Difusão , Fluorescência , Ouro/química , Humanos , Modelos Teóricos , Peso Molecular , Nanoestruturas/química , Nanotecnologia , Ligação Proteica , Titânio/química
19.
Anal Chem ; 89(1): 895-901, 2017 01 03.
Artigo em Inglês | MEDLINE | ID: mdl-27977147

RESUMO

Mass spectrometry continues to develop as a valuable tool in the analysis of proteins and protein complexes. In protein complex mass spectrometry studies, surface-induced dissociation (SID) has been successfully applied in quadrupole time-of-flight (Q-TOF) instruments. SID provides structural information on noncovalent protein complexes that is complementary to other techniques. However, the mass resolution of Q-TOF instruments can limit the information that can be obtained for protein complexes by SID. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) provides ultrahigh resolution and ultrahigh mass accuracy measurements. In this study, an SID device was designed and successfully installed in a hybrid FT-ICR instrument in place of the standard gas collision cell. The SID-FT-ICR platform has been tested with several protein complex systems (homooligomers, a heterooligomer, and a protein-ligand complex, ranging from 53 to 85 kDa), and the results are consistent with data previously acquired on Q-TOF platforms, matching predictions from known protein interface information. SID fragments with the same m/z but different charge states are well-resolved based on distinct spacing between adjacent isotope peaks, and the addition of metal cations and ligands can also be isotopically resolved with the ultrahigh mass resolution available in FT-ICR.


Assuntos
Aminoidrolases/análise , Toxina da Cólera/análise , Ciclotrons , Estreptavidina/análise , Aminoidrolases/metabolismo , Análise de Fourier , Espectrometria de Massas , Espectroscopia de Infravermelho com Transformada de Fourier , Propriedades de Superfície
20.
Anal Chem ; 89(14): 7607-7614, 2017 07 18.
Artigo em Inglês | MEDLINE | ID: mdl-28636334

RESUMO

The effects of charge state on structures of native-like cations of serum albumin, streptavidin, avidin, and alcohol dehydrogenase were probed using cation-to-anion proton-transfer reactions (CAPTR), ion mobility, mass spectrometry, and complementary energy-dependent experiments. The CAPTR products all have collision cross-section (Ω) values that are within 5.5% of the original precursor cations. The first CAPTR event for each precursor yields products that have smaller Ω values and frequently exhibit the greatest magnitude of change in Ω resulting from a single CAPTR event. To investigate how the structures of the precursors affect the structures of the products, ions were activated as a function of energy prior to CAPTR. In each case, the Ω values of the activated precursors increase with increasing energy, but the Ω values of the CAPTR products are smaller than the activated precursors. To investigate the stabilities of the CAPTR products, the products were activated immediately prior to ion mobility. These results show that additional structures with smaller or larger Ω values can be populated and that the structures and stabilities of these ions depend most strongly on the identity of the protein and the charge state of the product, rather than the charge state of the precursor or the number of CAPTR events. Together, these results indicate that the excess charges initially present on native-like ions have a modest, but sometimes statistically significant, effect on their Ω values. Therefore, potential contributions from charge state should be considered when using experimental Ω values to elucidate structures in solution.


Assuntos
Álcool Desidrogenase/análise , Avidina/análise , Prótons , Albumina Sérica/análise , Estreptavidina/análise , Álcool Desidrogenase/metabolismo , Ânions/química , Cátions/química , Humanos , Espectrometria de Massas
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