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1.
Molecules ; 29(8)2024 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-38675624

RESUMO

We prepared network polysaccharide nanoscopic hydrogels by crosslinking water-soluble chitosan (WSCS) with a carboxylate-terminated maltooligosaccharide crosslinker via condensation. In this study, the enzymatic elongation of amylose chains on chitosan-based network polysaccharides by glucan phosphorylase (GP) catalysis was performed to obtain assembly materials. Maltoheptaose (Glc7) primers for GP-catalyzed enzymatic polymerization were first introduced into WSCS by reductive amination. Crosslinking of the product with the above-mentioned crosslinker by condensation was then performed to produce Glc7-modified network polysaccharides. The GP-catalyzed enzymatic polymerization of the α-d-glucose 1-phosphate monomer from the Glc7 primers on the network polysaccharides was conducted, where the elongated amylose chains formed double helices. Enzymatic disintegration of the resulting network polysaccharide assembly successfully occurred by α-amylase-catalyzed hydrolysis of the double helical amyloses. The encapsulation and release of a fluorescent dye, Rhodamine B, using the CS-based network polysaccharides were also achieved by means of the above two enzymatic approaches.


Assuntos
Quitosana , Corantes Fluorescentes , Glucanos , Polissacarídeos , Quitosana/química , Corantes Fluorescentes/química , Polissacarídeos/química , Rodaminas/química , Hidrogéis/química , alfa-Amilases/química , alfa-Amilases/metabolismo , Hidrólise , Amilose/química , Polimerização , Oligossacarídeos/química , Glucofosfatos/química , Glucofosfatos/metabolismo
2.
Int J Mol Sci ; 22(7)2021 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-33805949

RESUMO

Here, we report a biochemical characterization of recombinant maize indole-3-acetyl-ß-d-glucose (IAGlc) synthase which glucosylates indole-3-acetic acid (IAA) and thus abolishes its auxinic activity affecting plant hormonal homeostasis. Substrate specificity analysis revealed that IAA is a preferred substrate of IAGlc synthase; however, the enzyme can also glucosylate indole-3-butyric acid and indole-3-propionic acid with the relative activity of 66% and 49.7%, respectively. KM values determined for IAA and UDP glucose are 0.8 and 0.7 mM, respectively. 2,4-Dichlorophenoxyacetic acid is a competitive inhibitor of the synthase and causes a 1.5-fold decrease in the enzyme affinity towards IAA, with the Ki value determined as 117 µM, while IAA-Asp acts as an activator of the synthase. Two sugar-phosphate compounds, ATP and glucose-1-phosphate, have a unique effect on the enzyme by acting as activators at low concentrations and showing inhibitory effect at higher concentrations (above 0.6 and 4 mM for ATP and glucose-1-phosphate, respectively). Results of molecular docking revealed that both compounds can bind to the PSPG (plant secondary product glycosyltransferase) motif of IAGlc synthase; however, there are also different potential binding sites present in the enzyme. We postulate that IAGlc synthase may contain more than one binding site for ATP and glucose-1-phosphate as reflected in its activity modulation.


Assuntos
Glucosiltransferases/química , Uridina Difosfato Glucose/química , Zea mays/enzimologia , Ácido 2,4-Diclorofenoxiacético/química , Trifosfato de Adenosina/química , Motivos de Aminoácidos , Sítios de Ligação , Cátions , Inibidores Enzimáticos/farmacologia , Escherichia coli/metabolismo , Glucose/química , Glucofosfatos/química , Glucosiltransferases/antagonistas & inibidores , Homeostase , Concentração de Íons de Hidrogênio , Cinética , Simulação de Acoplamento Molecular , Reguladores de Crescimento de Plantas/metabolismo , Proteínas Recombinantes/química , Especificidade por Substrato , Zea mays/efeitos dos fármacos
3.
Molecules ; 26(15)2021 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-34361792

RESUMO

Glycogen phosphorylase (GP) is a key enzyme in the glycogenolysis pathway and a potential therapeutic target in the management of type 2 diabetes. It catalyzes a reversible reaction: the release of the terminal glucosyl residue from glycogen as glucose 1-phosphate; or the transfer of glucose from glucose 1-phosphate to glycogen. A colorimetric method to follow in vitro the activity of GP with usefulness in structure-activity relationship studies and high-throughput screening capability is herein described. The obtained results allowed the choice of the optimal concentration of enzyme of 0.38 U/mL, 0.25 mM glucose 1-phosphate, 0.25 mg/mL glycogen, and temperature of 37 °C. Three known GP inhibitors, CP-91149, a synthetic inhibitor, caffeine, an alkaloid, and ellagic acid, a polyphenol, were used to validate the method, CP-91149 being the most active inhibitor. The effect of glucose on the IC50 value of CP-91149 was also investigated, which decreased when the concentration of glucose increased. The assay parameters for a high-throughput screening method for discovery of new potential GP inhibitors were optimized and standardized, which is desirable for the reproducibility and comparison of results in the literature. The optimized method can be applied to the study of a panel of synthetic and/or natural compounds, such as polyphenols.


Assuntos
Glucose/química , Glucofosfatos/química , Glicogênio Fosforilase/química , Glicogênio/química , Amidas/farmacologia , Animais , Cafeína/farmacologia , Ácido Elágico/farmacologia , Ensaios Enzimáticos , Glicogênio Fosforilase/antagonistas & inibidores , Glicogênio Fosforilase/isolamento & purificação , Ensaios de Triagem em Larga Escala , Indóis/farmacologia , Cinética , Coelhos , Soluções , Relação Estrutura-Atividade
4.
Biochemistry (Mosc) ; 85(5): 629-635, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32571193

RESUMO

Two glycosyl 1-phosphate polymers containing monoglycosyl 1-phosphate, -6)-α-D-Glcp-(1-P-, and diglycosyl 1-phosphate, -6)-α-D-GalpNAc-(1→6)-α-D-GlcpNAc-(1-P-, in the repeating unit were identified in the cell wall of Glutamicibacter protophormiae VKM Ac-2104T (formerly, Arthrobacter protophormiae). The structures of these polymers were described for the first time in prokaryotes. Teichulosonic acid, the third identified polymer, with 3-deoxy-D-glycero-α-D-galacto-non-2-ulopyranosonic acid (Kdn) and ß-D-glucopyranose residues in the main chain, →6)-ß-D-Glcp-(1→8)-α-Kdn-(2→, has been previously detected in a number of actinobacteria. The structures of these glycopolymers were established based on the results of chemical analysis and one-dimensional 1H, 13C, and 31P NMR spectroscopy using two-dimensional homonuclear (1H,1H COZY, TOCSY, ROESY) and heteronuclear (1H,13C HSQC, HSQC-TOCSY, HMBC, and 1H,31P HMBC) techniques.


Assuntos
Parede Celular/metabolismo , Glucofosfatos/metabolismo , Espectroscopia de Ressonância Magnética/métodos , Micrococcaceae/metabolismo , Polímeros/química , Polissacarídeos Bacterianos/metabolismo , Ácidos Teicoicos/metabolismo , Parede Celular/química , Glucofosfatos/química , Polissacarídeos Bacterianos/química , Ácidos Teicoicos/química
5.
Molecules ; 25(12)2020 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-32575421

RESUMO

Phosphodiesters of glucose-2-phosphate (G2P) are found only in few natural compounds such as agrocinopine D and agrocin 84. Agrocinopine D is a G2P phosphodiester produced by plants infected by Agrobacterium fabrum C58 and recognized by the bacterial periplasmic binding protein AccA for being transported into the bacteria before cleavage by the phosphodiesterase AccF, releasing G2P, which promotes virulence by binding the repressor protein AccR. The G2P amide agrocin 84 is a natural antibiotic produced by the non-pathogenic Agrobacterium radiobacter K84 strain used as a biocontrol agent by competing with Agrobacterium fabrum C58. G2P esters are also found in irregular glycogen structures. The rare glucopyranosyl-2-phophoryl moiety found in agrocin 84 is the key structural signature enabling its action as a natural antibiotic. Likewise, G2P and G2P esters can also dupe the Agrobacterium agrocinopine catabolism cascade. Such observations illustrate the importance of G2P esters on which we have recently focused our interest. After a brief review of the reported phosphorylation coupling methods and the choice of carbohydrate building blocks used in G2P chemistry, a flexible access to glucose-2-phosphate esters using the phosphoramidite route is proposed.


Assuntos
Nucleotídeos de Adenina , Agrobacterium , Glucofosfatos , Glicogênio , Nucleotídeos de Adenina/química , Nucleotídeos de Adenina/metabolismo , Agrobacterium/química , Agrobacterium/metabolismo , Ésteres/química , Ésteres/metabolismo , Glucofosfatos/química , Glucofosfatos/metabolismo , Glicogênio/química , Glicogênio/metabolismo , Proteínas Periplásmicas de Ligação/metabolismo
6.
Org Biomol Chem ; 17(5): 1090-1096, 2019 01 31.
Artigo em Inglês | MEDLINE | ID: mdl-30632589

RESUMO

The first non-natural derivative of the rare d-glucose-2-phosphate (G2P), namely glucose-2-(O-lactic acid phosphate) (G2LP), has been synthesized. When used as sole carbon source, G2LP enables bacterial growth of the plant pathogenic strain Agrobacterium fabrum C58 (formerly referred to as Agrobacterium tumefaciens). X-ray crystallography and affinity measurements investigations reveal that G2LP binds the periplasmic binding protein (PBP) AccA similarly to the natural compounds and with the same affinity. Moreover, enzymatic assays show that it is able to serve as substrate of the phosphodiesterase AccF. The properties found for G2LP demonstrate that the very unusual glucose-2-phosphoryl residue, present in G2LP, can be used as structural feature for designing non-natural systems fully compatible with the Acc cascade of A. fabrum.


Assuntos
Agrobacterium/química , Proteínas de Bactérias/metabolismo , Ésteres/síntese química , Glucofosfatos/síntese química , Proteínas Periplásmicas de Ligação/metabolismo , Agrobacterium/crescimento & desenvolvimento , Cristalografia por Raios X , Ésteres/química , Ésteres/metabolismo , Glucofosfatos/química , Glucofosfatos/metabolismo , Diester Fosfórico Hidrolases/metabolismo , Especificidade por Substrato
7.
Biochim Biophys Acta Proteins Proteom ; 1865(11 Pt A): 1348-1357, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28844747

RESUMO

Erwinia amylovora, a Gram-negative plant pathogen, is the causal agent of Fire Blight, a contagious necrotic disease affecting plants belonging to the Rosaceae family, including apple and pear. E. amylovora is highly virulent and capable of rapid dissemination in orchards; effective control methods are still lacking. One of its most important pathogenicity factors is the exopolysaccharide amylovoran. Amylovoran is a branched polymer made by the repetition of units mainly composed of galactose, with some residues of glucose, glucuronic acid and pyruvate. E. amylovora glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase, EC 2.7.7.9) has a key role in amylovoran biosynthesis. This enzyme catalyses the production of UDP-glucose from glucose-1-phosphate and UTP, which the epimerase GalE converts into UDP-galactose, the main building block of amylovoran. We determined EaGalU kinetic parameters and substrate specificity with a range of sugar 1-phosphates. At time point 120min the enzyme catalysed conversion of the sugar 1-phosphate into the corresponding UDP-sugar reached 74% for N-acetyl-α-d-glucosamine 1-phosphate, 28% for α-d-galactose 1-phosphate, 0% for α-d-galactosamine 1-phosphate, 100% for α-d-xylose 1-phosphate, 100% for α-d-glucosamine 1-phosphate, 70% for α-d-mannose 1-phosphate, and 0% for α-d-galacturonic acid 1-phosphate. To explain our results we obtained the crystal structure of EaGalU and augmented our study by docking the different sugar 1-phosphates into EaGalU active site, providing both reliable models for substrate binding and enzyme specificity, and a rationale that explains the different activity of EaGalU on the sugar 1-phosphates used. These data demonstrate EaGalU potential as a biocatalyst for biotechnological purposes, as an alternative to the enzyme from Escherichia coli, besides playing an important role in E. amylovora pathogenicity.


Assuntos
Proteínas de Bactérias/química , Erwinia amylovora/enzimologia , Glucofosfatos/química , UTP-Glucose-1-Fosfato Uridililtransferase/química , Uridina Difosfato Glucose/química , Uridina Trifosfato/química , Acetilglucosamina/análogos & derivados , Acetilglucosamina/química , Acetilglucosamina/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cristalografia por Raios X , Erwinia amylovora/química , Escherichia coli/genética , Escherichia coli/metabolismo , Galactosamina/análogos & derivados , Galactosamina/química , Galactosamina/metabolismo , Galactosefosfatos/química , Galactosefosfatos/metabolismo , Expressão Gênica , Glucosamina/análogos & derivados , Glucosamina/química , Glucosamina/metabolismo , Glucofosfatos/metabolismo , Cinética , Manosefosfatos/química , Manosefosfatos/metabolismo , Modelos Moleculares , Simulação de Acoplamento Molecular , Pentosefosfatos/química , Pentosefosfatos/metabolismo , Polissacarídeos Bacterianos/biossíntese , Polissacarídeos Bacterianos/química , Domínios e Motivos de Interação entre Proteínas , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , UTP-Glucose-1-Fosfato Uridililtransferase/genética , UTP-Glucose-1-Fosfato Uridililtransferase/metabolismo , Uridina Difosfato Glucose/metabolismo , Uridina Trifosfato/metabolismo
8.
Proc Natl Acad Sci U S A ; 111(34): 12384-9, 2014 Aug 26.
Artigo em Inglês | MEDLINE | ID: mdl-25104750

RESUMO

ß-Phosphoglucomutase (ßPGM) catalyzes isomerization of ß-D-glucose 1-phosphate (ßG1P) into D-glucose 6-phosphate (G6P) via sequential phosphoryl transfer steps using a ß-D-glucose 1,6-bisphosphate (ßG16BP) intermediate. Synthetic fluoromethylenephosphonate and methylenephosphonate analogs of ßG1P deliver novel step 1 transition state analog (TSA) complexes for ßPGM, incorporating trifluoromagnesate and tetrafluoroaluminate surrogates of the phosphoryl group. Within an invariant protein conformation, the ß-D-glucopyranose ring in the ßG1P TSA complexes (step 1) is flipped over and shifted relative to the G6P TSA complexes (step 2). Its equatorial hydroxyl groups are hydrogen-bonded directly to the enzyme rather than indirectly via water molecules as in step 2. The (C)O-P bond orientation for binding the phosphate in the inert phosphate site differs by ∼ 30° between steps 1 and 2. By contrast, the orientations for the axial O-Mg-O alignment for the TSA of the phosphoryl group in the catalytic site differ by only ∼ 5°, and the atoms representing the five phosphorus-bonded oxygens in the two transition states (TSs) are virtually superimposable. The conformation of ßG16BP in step 1 does not fit into the same invariant active site for step 2 by simple positional interchange of the phosphates: the TS alignment is achieved by conformational change of the hexose rather than the protein.


Assuntos
Hexoses/química , Hexoses/metabolismo , Organofosfonatos/química , Organofosfonatos/metabolismo , Fosfoglucomutase/química , Fosfoglucomutase/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Catálise , Cristalografia por Raios X , Flúor/química , Glucose-6-Fosfato/química , Glucose-6-Fosfato/metabolismo , Glucofosfatos/química , Glucofosfatos/metabolismo , Isomerismo , Cinética , Lactococcus lactis/enzimologia , Magnésio/química , Modelos Moleculares , Estrutura Molecular , Ressonância Magnética Nuclear Biomolecular , Conformação Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Eletricidade Estática , Termodinâmica
9.
Magn Reson Chem ; 55(10): 893-901, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28432857

RESUMO

The idea that hydrogen bond cooperativity is responsible for the structure and reactivity of carbohydrates is examined. Density functional theory and gauge-including atomic orbital calculations on the known conformers of the α and ß anomers of d-glucopyranose in the gas phase are used to compute proton NMR chemical shifts and interatomic distances, which are taken as criteria for probing intramolecular interactions. Atom-atom interaction energies are calculated by the interacting quantum atoms approach in the framework of the quantum theory of atoms in molecules. Association of OH1 in the counterclockwise conformers with a strong acceptor, pyridine, is accompanied by cooperative participation from OH2, but there is no significant change in the bonding of the two following 1,2-diol motifs. The OH6... O5 (G-g+/cc/t and G+g-/cc/t conformers) or OH6... O4 (Tg+/cc/t conformer) distance is reduced, and the OH6 proton is slightly deshielded. In the latter case, this shortening and the associated increase in the OH6-O4 interaction energy may be interpreted as a small cooperative effect, but intermolecular interaction energies are practically the same for all three conformers. In most of the pyridine complexes, one ortho proton interacts with the endocyclic oxygen O5. Analogous results are obtained when the clockwise conformer, G-g+/cl/g-, detected for the α anomer, and a hypothetical conformer, Tt/cl/g-, are complexed with pyridine through OH6. Generally, the cooperative effect does not go beyond the first two OH groups of a chain. Copyright © 2017 John Wiley & Sons, Ltd.


Assuntos
Glucose/química , Espectroscopia de Ressonância Magnética , Teoria Quântica , Glucofosfatos/química , Ligação de Hidrogênio , Conformação Molecular , Estrutura Molecular
10.
Biochim Biophys Acta ; 1844(4): 759-66, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24491524

RESUMO

The archaeal non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN, EC 1.2.1.9) is a highly allosteric enzyme activated by glucose 1-phosphate (Glc1P). Recent kinetic analyses of two GAPN homologs from Sulfolobales show different allosteric behaviors toward the substrate glyceraldehyde-3-phosphate (GAP) and the allosteric effector Glc1P. In GAPN from Sulfolobus tokodaii (Sto-GAPN), Glc1P-induced activation follows an increase in affinity for GAP rather than an increase in maximum velocity, whereas in GAPN from Sulfolobus solfataricus (Sso-GAPN), Glc1P-induced activation follows an increase in maximum velocity rather than in affinity for GAP. To explore the molecular basis of this difference between Sto-GAPN and Sso-GAPN, we generated 14 mutants and 2 chimeras. The analyses of chimeric GAPNs generated from regions of Sto-GAPN and Sso-GAPN indicated that a 57-residue module located in the subunit interface was clearly involved in their allosteric behavior. Among the point mutations in this modular region, the Y139R variant of Sto-GAPN no longer displayed a sigmoidal K-type-like allostery, but instead had apparent V-type allostery similar to that of Sso-GAPN, suggesting that the residue located in the center of the homotetramer critically contributes to the allosteric behavior.


Assuntos
Proteínas Arqueais/metabolismo , Glucofosfatos/metabolismo , Gliceraldeído-3-Fosfato Desidrogenases/metabolismo , Subunidades Proteicas/metabolismo , Proteínas Recombinantes de Fusão/metabolismo , Sulfolobus solfataricus/enzimologia , Sulfolobus/enzimologia , Regulação Alostérica , Sequência de Aminoácidos , Proteínas Arqueais/química , Proteínas Arqueais/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Glucofosfatos/química , Gliceraldeído-3-Fosfato Desidrogenases/química , Gliceraldeído-3-Fosfato Desidrogenases/genética , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Engenharia de Proteínas , Multimerização Proteica , Subunidades Proteicas/química , Subunidades Proteicas/genética , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Sulfolobus/química , Sulfolobus/genética , Sulfolobus solfataricus/química , Sulfolobus solfataricus/genética
11.
Biomacromolecules ; 16(12): 3989-94, 2015 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-26584416

RESUMO

Thermostable α-glucan phosphorylase-catalyzed enzymatic copolymerization of α-d-glucose 1-phosphate (Glc-1-P) with its analogue monomer, α-d-glucosamine 1-phosphate (GlcN-1-P), from a maltotriose primer was performed to produce non-natural heteroaminopolysaccharides composed of Glc/GlcN units, that is, α(1→4)-linked glucosaminoglucans. The GlcN units in the products were further converted to N-acetyl-d-glucosamine (GlcNAc) units by N-acetylation. The structures of the products were evaluated by the MALDI-TOF MS, (1)H NMR, and (1)H-(1)H COSY NMR measurements, which were completely different from those of the natural glycosaminoglycans. The degrees of polymerization and Glc/GlcN compositional ratios of the products were relatively dependent on the Glc-1-P/Glc-1-P/Glc3 feed ratios. The noncrystalline natures of the present materials were supported by the X-ray diffraction measurement.


Assuntos
Proteínas de Bactérias/química , Glicosaminoglicanos/química , Fosforilases/química , Polissacarídeos/síntese química , Acetilação , Acetilglucosamina/química , Proteínas de Bactérias/isolamento & purificação , Biocatálise , Sequência de Carboidratos , Estabilidade Enzimática , Glucosamina/análogos & derivados , Glucosamina/química , Glucofosfatos/química , Temperatura Alta , Dados de Sequência Molecular , Fosforilases/isolamento & purificação , Polimerização , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
12.
Org Biomol Chem ; 13(14): 4336-43, 2015 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-25766841

RESUMO

The relationship between two aminopolysaccharide stereoisomers, namely α-(1→4)- and ß-(1→4)-linked (N-acetyl)-D-glucosamine polymers, is of significant interest within the field of polysaccharide science, as they correspond to amino analogs of the representative abundant natural polysaccharides, viz. amylose and cellulose. While the latter glucosamine polymer is the basis of well-known natural polysaccharides, chitin and chitosan (linear polysaccharides composed of ß-(1→4)-linked N-acetyl-D-glucosamine and D-glucosamine), to the best of our knowledge, the former (α-(1→4)-linked) has not been observed in nature. For the purpose of these studies, the synthesis of such non-natural aminopolysaccharides was performed by the thermostable α-glucan phosphorylase (from Aquifex aeolicus VF5)-catalyzed enzymatic polymerization of α-D-glucosamine 1-phosphate (GlcN-1-P), via successive α-glucosaminylations, in ammonia buffer containing Mg(2+) ions, resulting in the production of the α-(1→4)-linked D-glucosamine polymers, corresponding to the structure of the chitosan stereoisomer. Subsequent N-acetylation of the products gave the aminopolysaccharides, corresponding to the chitin stereoisomer.


Assuntos
Quitina/química , Quitina/síntese química , Quitosana/química , Quitosana/síntese química , Glucosamina/análogos & derivados , Glucofosfatos/química , Fosforilases/metabolismo , Polimerização , Aquifoliaceae/enzimologia , Biocatálise , Técnicas de Química Sintética , Estabilidade Enzimática , Glucosamina/química , Fosforilases/química , Estereoisomerismo , Temperatura
13.
Org Biomol Chem ; 13(3): 866-75, 2015 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-25408103

RESUMO

Cps2L, a thymidylytransferase, is the first enzyme in Streptococcus pneumoniae L-rhamnose biosynthesis and an antibacterial target. We herein report the evaluation of six sugar phosphate analogues selected to further probe Cps2L substrate tolerance. A modified continuous spectrophotometric assay was employed for facile detection of pyrophosphate (PPi) released from nucleotidylyltransfase-catalysed condensation of sugar 1-phosphates and nucleoside triphosphates to produce sugar nucleotides. Additionally, experiments using waterLOGSY NMR spectroscopy were investigated as a complimentary method to evaluate binding affinity to Cps2L.


Assuntos
Antibacterianos/química , Proteínas de Bactérias/química , Inibidores Enzimáticos/química , Glucofosfatos/química , Nucleotidiltransferases/química , Antibacterianos/síntese química , Proteínas de Bactérias/antagonistas & inibidores , Difosfatos/análise , Ensaios Enzimáticos , Inibidores Enzimáticos/síntese química , Cinética , Nucleotidiltransferases/antagonistas & inibidores , Proteínas Recombinantes/química , Espectrofotometria , Streptococcus pneumoniae/química , Streptococcus pneumoniae/enzimologia
14.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 10): 2008-16, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24100319

RESUMO

The first structure of a bacterial α-phosphoglucomutase with an overall fold similar to eukaryotic phosphomannomutases is reported. Unlike most α-phosphoglucomutases within the α-D-phosphohexomutase superfamily, it belongs to subclass IIb of the haloacid dehalogenase superfamily (HADSF). It catalyzes the reversible conversion of α-glucose 1-phosphate to glucose 6-phosphate. The crystal structure of α-phosphoglucomutase from Lactococcus lactis (APGM) was determined at 1.5 Šresolution and contains a sulfate and a glycerol bound at the enzyme active site that partially mimic the substrate. A dimeric form of APGM is present in the crystal and in solution, an arrangement that may be functionally relevant. The catalytic mechanism of APGM and its strict specificity towards α-glucose 1-phosphate are discussed.


Assuntos
Proteínas de Bactérias/química , Lactococcus lactis/enzimologia , Fosfotransferases (Fosfomutases)/química , Proteínas de Bactérias/genética , Domínio Catalítico/genética , Cristalografia por Raios X , Glucose-6-Fosfato/química , Glucose-6-Fosfato/genética , Glucofosfatos/química , Glucofosfatos/genética , Hidrolases/química , Hidrolases/classificação , Hidrolases/genética , Lactococcus lactis/genética , Mimetismo Molecular/genética , Família Multigênica , Fosfotransferases (Fosfomutases)/classificação , Fosfotransferases (Fosfomutases)/genética , Ligação Proteica/genética , Especificidade por Substrato/genética
15.
Biomacromolecules ; 14(10): 3713-22, 2013 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-24044626

RESUMO

Amylose brushes were synthesized by enzymatic polymerization with glucose-1-phosphate as monomer and rabbit muscle phosphorylase b as catalyst on gold-covered surfaces of a quartz crystal microbalance. Fourier transform infrared (FT-IR) spectra confirmed the presence of the characteristic absorption peaks of amylose between 3100 cm(-1) and 3500 cm(-1). The thickness of the amylose brushes-measured by Spectroscopic Ellipsometry--can be tailored from 4 to 20 nm, depending on the reaction time. The contour length of the stretched amylose chains on gold surfaces has been evaluated by single molecule force spectroscopy, and a total chain length of about 20 nm for 16.2 nm thick amylose brushes was estimated. X-ray photoelectron spectroscopy (XPS) was employed to characterize the amylose brushes before and after the adsorption of fatty acids. The dynamics of inclusion complex formation between amylose brushes and two fatty acids (octanoic acid and myristic acid) with different chain length was investigated as a function of time using a quartz crystal microbalance with dissipation monitoring (QCM-D) immersed in the liquid phase. QCM-D signals including the frequency and dissipation shifts elucidated the effects of the fatty acid concentration, the solvent types, the chain length of the fatty acids and the thickness of the amylose brushes on the dynamics of fatty acid molecule adsorption on the amylose brush-modified sensor surfaces.


Assuntos
Amilose/biossíntese , Glucofosfatos/metabolismo , Glicogênio Fosforilase Muscular/metabolismo , Ouro/metabolismo , Técnicas de Microbalança de Cristal de Quartzo , Termodinâmica , Amilose/química , Animais , Biocatálise , Configuração de Carboidratos , Glucofosfatos/química , Ouro/química , Dados de Sequência Molecular , Músculo Esquelético/enzimologia , Polimerização , Coelhos , Silício/química , Silício/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier , Propriedades de Superfície , Fatores de Tempo
16.
Proc Natl Acad Sci U S A ; 107(10): 4555-60, 2010 Mar 09.
Artigo em Inglês | MEDLINE | ID: mdl-20164409

RESUMO

Prior evidence supporting the direct observation of phosphorane intermediates in enzymatic phosphoryl transfer reactions was based on the interpretation of electron density corresponding to trigonal species bridging the donor and acceptor atoms. Close examination of the crystalline state of beta-phosphoglucomutase, the archetypal phosphorane intermediate-containing enzyme, reveals that the trigonal species is not PO-3 , but is MgF-3 (trifluoromagnesate). Although MgF-3 complexes are transition state analogues rather than phosphoryl group transfer reaction intermediates, the presence of fluorine nuclei in near-transition state conformations offers new opportunities to explore the nature of the interactions, in particular the independent measures of local electrostatic and hydrogen-bonding distributions using 19F NMR. Measurements on three beta-PGM-MgF-3 -sugar phosphate complexes show a remarkable relationship between NMR chemical shifts, primary isotope shifts, NOEs, cross hydrogen bond F...H-N scalar couplings, and the atomic positions determined from the high-resolution crystal structure of the beta-PGM-MgF--3 -G6P complex. The measurements provide independent validation of the structural and isoelectronic MgF--3 model of near-transition state conformations.


Assuntos
Fluoretos/química , Compostos de Magnésio/química , Fosfoglucomutase/química , Fosforanos/química , Domínio Catalítico , Cristalografia por Raios X , Fluoretos/metabolismo , Glucofosfatos/química , Glucofosfatos/metabolismo , Ligação de Hidrogênio , Compostos de Magnésio/metabolismo , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Conformação Molecular , Estrutura Molecular , Fosfatos/química , Fosfatos/metabolismo , Fosfoglucomutase/metabolismo , Fosforanos/metabolismo , Ligação Proteica , Conformação Proteica
17.
J Am Chem Soc ; 133(49): 19570-3, 2011 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-21819148

RESUMO

We report the first implementation of the multiple-quantum magic-angle-spinning method to obtain high-resolution (39)K NMR spectra for bio-organic solids. The observed spectral resolution in the isotropic dimension is nearly at the sub-ppm level, which approaches the intrinsic resolution limit determined primarily by quadrupole relaxation. We show that high-resolution solid-state (39)K NMR spectroscopy can be used as a new means of probing K(+) ions in biomolecular systems.


Assuntos
Ressonância Magnética Nuclear Biomolecular/métodos , Cristalização , Quadruplex G , Glucofosfatos/química , Modelos Moleculares , Picratos/química
18.
Org Biomol Chem ; 9(6): 1799-808, 2011 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-21264378

RESUMO

Ravidomycin V and related compounds, e.g., FE35A-B, exhibit potent anticancer activities against various cancer cell lines in the presence of visible light. The amino sugar moieties (D-ravidosamine and its analogues, respectively) in these molecules contribute to the higher potencies of ravidomycin and analogues when compared to closely related compounds with neutral or branched sugars. Within the ravidomycin V biosynthetic gene cluster, five putative genes encoding NDP-D-ravidosamine biosynthetic enzymes were identified. Through the activities of the isolated enzymes in vitro, it is demonstrated that ravD, ravE, ravIM, ravAMT and ravNMT encode TDP-D-glucose synthase, TDP-4-keto-6-deoxy-D-glucose-4,6-dehydratase, TDP-4-keto-6-deoxy-D-glucose-3,4-ketoisomerase, TDP-3-keto-6-deoxy-D-galactose-3-aminotransferase, and TDP-3-amino-3,6-dideoxy-D-galactose-N,N-dimethyl-transferase, respectively. A protocol for a one-pot enzymatic synthesis of TDP-D-ravidosamine has been developed. The results presented here now set the stage to produce TDP-D-ravidosamine routinely for glycosylation studies.


Assuntos
Bacillales/enzimologia , Escherichia coli/enzimologia , Glucofosfatos/química , Açúcares de Nucleosídeo Difosfato/química , Salmonella typhimurium/enzimologia , Timidina Monofosfato/química , Nucleotídeos de Timina/química , Glucofosfatos/biossíntese , Estrutura Molecular , Família Multigênica , Açúcares de Nucleosídeo Difosfato/metabolismo , Timidina Monofosfato/metabolismo
19.
J Exp Bot ; 61(4): 1041-51, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20026474

RESUMO

Understanding of the control of metabolic pathways in plants requires direct measurement of the metabolic turnover rate. Sugar phosphate metabolism, including the Calvin cycle, is the primary pathway in C(3) photosynthesis, the dynamic status of which has not been assessed quantitatively in the leaves of higher plants. Since the flux of photosynthetic carbon metabolism is affected by the CO(2) fixation rate in leaves, a novel in vivo (13)C-labelling system was developed with (13)CO(2) for the kinetic determination of metabolic turnover that was the time-course of the (13)C-labelling ratio in each metabolite. The system is equipped with a gas-exchange chamber that enables real-time monitoring of the CO(2) fixation rate and a freeze-clamp that excises a labelled leaf concurrently with quenching the metabolic reactions by liquid nitrogen within the photosynthesis chamber. Kinetic measurements were performed by detecting mass isotopomer abundance with capillary electrophoresis-tandem mass spectrometry. The multiple reaction monitoring method was optimized for the determination of each compound for sensitive detection because the amount of some sugar phosphates in plant cells is extremely small. Our analytical system enabled the in vivo turnover of sugar phosphates to be monitored in fresh tobacco (Nicotiana tabacum) leaves, which revealed that the turnover rate of glucose-1-phosphate (G1P) was significantly lower than that of other sugar phosphates, including glucose-6-phosphate (G6P). The pool size of G1P is 12 times lower than that of G6P. These results indicate that the conversion of G6P to G1P is one of the rate-limiting steps in the sugar phosphate pathway.


Assuntos
Dióxido de Carbono/metabolismo , Eletroforese Capilar/métodos , Nicotiana/química , Nicotiana/metabolismo , Fotossíntese , Espectrometria de Massas em Tandem/métodos , Dióxido de Carbono/química , Isótopos de Carbono/química , Isótopos de Carbono/metabolismo , Glucose-6-Fosfato/química , Glucose-6-Fosfato/metabolismo , Glucofosfatos/química , Glucofosfatos/metabolismo , Marcação por Isótopo , Cinética , Folhas de Planta/química , Folhas de Planta/metabolismo
20.
Langmuir ; 26(24): 18760-70, 2010 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-21087005

RESUMO

Adsorption, desorption, and precipitation reactions at environmental interfaces govern the fate of phosphorus in terrestrial and aquatic environments. Typically, a substantial part of the total pool of phosphorus consists of organophosphate, and in this study we have focused on the interactions between glucose-1-phosphate (G1P) and goethite (α-FeOOH) particles. The adsorption and surface-promoted hydrolysis reactions have been studied at room temperature as a function of pH, time, and total concentration of G1P by means of quantitative batch experiments in combination with infrared spectroscopy. A novel simultaneous infrared and potentiometric titration (SIPT) technique has also been used to study the rates and mechanisms of desorption of the surface complexes. The results have shown that G1P adsorption occurs over a wide pH interval and at pH values above the isoelectric point of goethite (IEP(goethite) = 9.4), indicating a comparatively strong interaction with the particle surfaces. As evidenced by IR spectroscopy, G1P formed pH-dependent surface complexes on goethite, and investigations of both adsorption and desorption processes were consistent with a model including three types of surface complexes. These complexes interact monodentately with surface Fe but differ in hydrogen bonding interactions via the auxiliary oxygens of the phosphate group. The apparent desorption rates were shown to be influenced by reaction pathways that include interconversion of surface species, which highlights the difficulty in determining the intrinsic desorption rates of individual surface complexes. Desorption results have also indicated that the molecular structures of surface complexes and the surface charge are two important determinants of G1P desorption rates. Finally, this study has shown that surface-promoted hydrolysis of G1P by goethite is base-catalyzed but that the extent of hydrolysis was small.


Assuntos
Glucofosfatos/química , Compostos de Ferro/química , Minerais/química , Água/química , Adsorção , Concentração de Íons de Hidrogênio , Hidrólise , Cinética , Modelos Moleculares , Conformação Molecular , Organofosfonatos/química , Potenciometria , Solo/química , Espectrofotometria Infravermelho , Propriedades de Superfície , Suspensões
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