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1.
Biochemistry ; 59(25): 2328-2339, 2020 06 30.
Artigo em Inglês | MEDLINE | ID: mdl-32428401

RESUMO

CYBASC proteins are ascorbate (AscH-) reducible, diheme b-containing integral membrane cytochrome b561 proteins (cytb561), which are proposed to be involved in AscH- recycling and facilitation of iron absorption. Two distinct CYBASC paralogs from the plant Arabidopsis thaliana, Atcytb561-A (A-paralog) and Atcytb561-B (B-paralog), have been found to differ in their visible-spectral characteristics and their interaction with AscH- and ferric iron chelates. A previously determined crystal structure of the B-paralog provides the first insights into the structural organization of a CYBASC member and implies hydrogen bonding between the substrate AscH- and the conserved lysine residues at positions 77 (B-K77) and 81 (B-K81). The function of the highly conserved tyrosine at position 70 (B-Y70) is not obvious in the crystal structure, but its localization indicates the possible involvement in proton-coupled electron transfer. Here we show that B-Y70 plays a major role in the modulation of the oxidation-reduction midpoint potential of the high-potential heme, EM(bH), as well as in AscH- oxidation. Our results support the involvement of the functionally conserved B-K77 in the stabilization of the dianion Asc2-. These findings are supported by the crystal structure of the B-paralog, but a comparative biochemical and biophysical characterization of the A- and B-paralogs implied distinct and more complex functions of the corresponding residues A-Y69 and A-K76 in the A-paralog. Our results emphasize the need for a high-resolution crystal structure of the A-paralog to illuminate the differences in functional organization between the two paralogs.


Assuntos
Proteínas de Arabidopsis/química , Arabidopsis/enzimologia , Grupo dos Citocromos b/química , Lisina/química , Tirosina/química , Sequência de Aminoácidos , Proteínas de Arabidopsis/isolamento & purificação , Grupo dos Citocromos b/isolamento & purificação , Transporte de Elétrons , Heme/química , Alinhamento de Sequência
2.
Inorg Chem ; 59(1): 629-641, 2020 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-31820939

RESUMO

Ferritins are supramolecular nanocage proteins, which synthesize hydrated ferric oxyhydroxide mineral via protein mediated rapid Fe2+ sequestration and ferroxidase reactions. Ferritin minerals are also associated with a significant amount of phosphate, which contribute toward their structure and reactivity. Like iron, phosphate also regulates the pathogenesis of Mycobacterium tuberculosis (Mtb), which expresses two types of ferritin: heme binding bacterioferritin A (BfrA) and nonheme binding bacterioferritin B (BfrB). Unlike Mtb BfrA, the rapid kinetics and mechanism of ferroxidase activity, and the mineral core formation/dissolution in Mtb BfrB are not well explored. Moreover, the effect of physiological levels of phosphate (0-10 mM) on the synthesis, structure, and reactivity of ferritin mineral core also require investigation in detail. Therefore, the stopped-flow rapid kinetics of ferroxidase activity (ΔA650/Δt) of Mtb BfrB was carried out, which detected a transient intermediate similar to diferric peroxo species as observed in frog and human ferritins. Increasing phosphate concentration increased the initial rate of iron mineralization (ΔA350/Δt) and dissolved O2 consumption (both ∼1.5-2-fold). Phosphate not only decreased the amount of iron loading and size of the BfrB mineral core (both up to 2-fold) but also decreased its crystallinity, resembling the variations observed in the core morphology of different native ferritins. In addition, phosphate inhibited the kinetics of reductive iron mobilization (∼6-8-fold) indicating its influence on the stability of the iron mineral core. Hence, the current work provides the kinetic/mechanistic insight toward the ferroxidase activity in Mtb BfrB, apart from demonstrating the role of phosphate toward the structure/reactivity of its iron mineral.


Assuntos
Proteínas de Bactérias/metabolismo , Grupo dos Citocromos b/metabolismo , Ferritinas/metabolismo , Ferro/metabolismo , Mycobacterium tuberculosis/química , Fosfatos/metabolismo , Animais , Anuros , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Grupo dos Citocromos b/química , Grupo dos Citocromos b/isolamento & purificação , Ferritinas/química , Ferritinas/isolamento & purificação , Humanos , Ferro/química , Cinética , Mycobacterium tuberculosis/metabolismo , Fosfatos/química
3.
Biochim Biophys Acta Bioenerg ; 1858(11): 915-926, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28807731

RESUMO

Two electrogenic phases with characteristic times of ~14µs and ~290µs are resolved in the kinetics of membrane potential generation coupled to single-electron reduction of the oxidized "relaxed" O state of ba3 oxidase from T. thermophilus (O→E transition). The rapid phase reflects electron redistribution between CuA and heme b. The slow phase includes electron redistribution from both CuA and heme b to heme a3, and electrogenic proton transfer coupled to reduction of heme a3. The distance of proton translocation corresponds to uptake of a proton from the inner water phase into the binuclear center where heme a3 is reduced, but there is no proton pumping and no reduction of CuB. Single-electron reduction of the oxidized "unrelaxed" state (OH→EH transition) is accompanied by electrogenic reduction of the heme b/heme a3 pair by CuA in a "fast" phase (~22µs) and transfer of protons in "middle" and "slow" electrogenic phases (~0.185ms and ~0.78ms) coupled to electron redistribution from the heme b/heme a3 pair to the CuB site. The "middle" and "slow" electrogenic phases seem to be associated with transfer of protons to the proton-loading site (PLS) of the proton pump, but when all injected electrons reach CuB the electronic charge appears to be compensated by back-leakage of the protons from the PLS into the binuclear site. Thus proton pumping occurs only to the extent of ~0.1 H+/e-, probably due to the formed membrane potential in the experiment.


Assuntos
Proteínas de Bactérias/química , Grupo dos Citocromos b/química , Complexo IV da Cadeia de Transporte de Elétrons/química , Elétrons , Potenciais da Membrana/fisiologia , Prótons , Thermus thermophilus/química , Proteínas de Bactérias/isolamento & purificação , Cobre/química , Grupo dos Citocromos b/isolamento & purificação , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/isolamento & purificação , Heme/química , Cinética , Oxirredução , Oxigênio/química , Termodinâmica , Thermus thermophilus/enzimologia
4.
Biochemistry ; 50(15): 3149-60, 2011 Apr 19.
Artigo em Inglês | MEDLINE | ID: mdl-21401125

RESUMO

Several residues in the third extramembrane segment (EM3) of adrenal cytochrome b(561) have been proposed to be involved in this cytochrome's interaction with ascorbate, but there has been no systematic evaluation of residues in the segment. We used alanine scanning mutagenesis to assess the functional and structural roles of the EM3 residues and several adjacent residues (residues 70-85) in the bovine cytochrome. Each alanine mutant was expressed in a bacterial system, solubilized with detergent, and affinity-purified. The recombinant proteins contained approximately two hemes per monomer and, except for R74A, retained basic functionality (≥ 94% reduced by 20 mM ascorbate). Equilibrium spectrophotometric titrations with ascorbate were used to analyze the α-band line shape and amplitude during reduction of the high- and low-potential heme centers (b(H) and b(L), respectively) and the midpoint ascorbate concentrations for the b(H) and b(L) transitions (C(H) and C(L), respectively). Y73A and K85A markedly narrowed the b(H) α-band peak; other mutants had weaker effects or no effect on b(H) or b(L) spectra. Relative changes in C(H) for the mutants were larger than changes in C(L), with 1.5-2.9-fold increases in C(H) for L70A, L71A, Y73A, R74A, N78A, and K85A. The amounts of functional b(H) and b(L) centers in additional Arg74 mutants, assessed by ascorbate titration and EPR spectroscopy, declined in concert in the following order: wild type > R74K > R74Q > R74T and R74Y > R74E. The results of this first comprehensive experimental test of the proposed roles of EM3 residues have identified residues with a direct or indirect impact on ascorbate interactions, on the environment of the b(H) heme center, and on formation of the native b(H)-b(L) unit. Surprisingly, no individual EM3 residue was by itself indispensable for the interaction with ascorbate, and the role of the segment appears to be more subtle than previously thought. These results also support our topological model of the adrenal cytochrome, which positions b(H) near the cytoplasmic side of the membrane.


Assuntos
Glândulas Suprarrenais/enzimologia , Membrana Celular/metabolismo , Grupo dos Citocromos b/química , Grupo dos Citocromos b/metabolismo , Alanina , Sequência de Aminoácidos , Substituição de Aminoácidos , Animais , Ácido Ascórbico/metabolismo , Bovinos , Grupo dos Citocromos b/genética , Grupo dos Citocromos b/isolamento & purificação , Análise Mutacional de DNA , Heme/metabolismo , Humanos , Camundongos , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica
5.
Biochemistry ; 50(50): 10836-43, 2011 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-22097922

RESUMO

The oxygen-tolerant membrane-bound [NiFe]-hydrogenase (MBH) from Ralstonia eutropha H16 consists of three subunits. The large subunit HoxG carries the [NiFe] active site, and the small subunit HoxK contains three [FeS] clusters. Both subunits form the so-called hydrogenase module, which is oriented toward the periplasm. Membrane association is established by a membrane-integral cytochrome b subunit (HoxZ) that transfers the electrons from the hydrogenase module to the respiratory chain. So far, it was not possible to isolate the MBH in its native heterotrimeric state due to the loss of HoxZ during the process of protein solubilization. By using the very mild detergent digitonin, we were successful in isolating the MBH hydrogenase module in complex with the cytochrome b. H(2)-dependent reduction of the two HoxZ-stemming heme centers demonstrated that the hydrogenase module is productively connected to the cytochrome b. Further investigation provided evidence that the MBH exists in the membrane as a high molecular mass complex consisting of three heterotrimeric units. The lipids phosphatidylethanolamine and phosphatidylglycerol were identified to play a role in the interaction of the hydrogenase module with the cytochrome b subunit.


Assuntos
Proteínas da Membrana Bacteriana Externa/isolamento & purificação , Cupriavidus necator/enzimologia , Grupo dos Citocromos b/isolamento & purificação , Hidrogenase/isolamento & purificação , Subunidades Proteicas/isolamento & purificação , Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Cardiolipinas/metabolismo , Cupriavidus necator/metabolismo , Grupo dos Citocromos b/química , Grupo dos Citocromos b/genética , Grupo dos Citocromos b/metabolismo , Digitonina/química , Estabilidade Enzimática , Hidrogenase/química , Hidrogenase/genética , Hidrogenase/metabolismo , Modelos Moleculares , Peso Molecular , Complexos Multiproteicos/química , Complexos Multiproteicos/genética , Complexos Multiproteicos/isolamento & purificação , Complexos Multiproteicos/metabolismo , Oxirredução , Fosfatidiletanolaminas/metabolismo , Fosfatidilgliceróis/metabolismo , Multimerização Proteica , Subunidades Proteicas/química , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Tensoativos/química
6.
Protein Expr Purif ; 80(1): 97-101, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21641999

RESUMO

Cytochrome b558 of the gram-positive bacterium Bacillussubtilis is the membrane anchor subunit of the succinate:quinone oxidoreductase of the citric acid cycle. The cytochrome consists of the SdhC polypeptide (202 residues) and two protoheme IX groups that function in transmembrane electron transfer to menaquinone. The general structure of the cytochrome is known from extensive experimental studies and by comparison to Wolinellasuccinogenes fumarate reductase for which the X-ray crystal structure has been determined. Solution state NMR can potentially be used to identify the quinone binding site(s) and study, e.g. redox-linked, dynamics of cytochrome b558. In this work we present an efficient procedure for the isolation of preparative amounts of isotopically labeled B. subtilis cytochrome b558 produced in Escherichia coli. We have also evaluated several detergents suitable for NMR for their effectiveness in maintaining the cytochrome solubilized and intact for days at room temperature.


Assuntos
Bacillus subtilis/enzimologia , Grupo dos Citocromos b/isolamento & purificação , NADPH Oxidases/isolamento & purificação , Grupo dos Citocromos b/química , Grupo dos Citocromos b/genética , Detergentes/química , Escherichia coli/genética , Marcação por Isótopo/métodos , NADPH Oxidases/química , NADPH Oxidases/genética , Isótopos de Nitrogênio/química , Plasmídeos/genética
7.
Protein Expr Purif ; 79(1): 115-21, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21501687

RESUMO

Human duodenal cytochrome b (Dcytb) is a transmembrane hemoprotein found in the duodenal brush border membrane and in erythrocytes. Dcytb has been linked to uptake of dietary iron and to ascorbate recycling in erythrocytes. Detailed biophysical and biochemical characterization of Dcytb has been limited by difficulties in expressing sufficient amounts of functional recombinant protein in yeast and insect cell systems. We have developed an Escherichia coli Rosetta-gami B(DE3) cell system for production of recombinant His-tagged human Dcytb with a yield of ∼26 mg of purified, ascorbate-reducible cytochrome per liter of culture. The recombinant protein is readily solubilized with n-dodecyl-ß-D-maltoside and purified to electrophoretic homogeneity by one-step chromatography on cobalt affinity resin. The purified recombinant Dcytb has a heme to protein ratio very close to the theoretical value of 2 and retains functional reactivity with ascorbate, as assessed by spectroscopic and kinetic measurements. Ascorbate showed a marked kinetic selectivity for the high-potential heme center over the low-potential heme center in purified Dcytb. This new E. coli expression system for Dcytb offers ∼7-fold improvement in yield and other substantial advantages over existing expression systems for reliable production of functional Dcytb at levels suitable for biochemical, biophysical and structural characterization.


Assuntos
Grupo dos Citocromos b/genética , Grupo dos Citocromos b/isolamento & purificação , Escherichia coli/genética , Oxirredutases/genética , Oxirredutases/isolamento & purificação , Ácido Ascórbico/metabolismo , Clonagem Molecular , Grupo dos Citocromos b/química , Grupo dos Citocromos b/metabolismo , Espectroscopia de Ressonância de Spin Eletrônica , Expressão Gênica , Humanos , Oxirredutases/química , Oxirredutases/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo
8.
Biochim Biophys Acta ; 1787(2): 129-33, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19111521

RESUMO

To counter antibiotic-resistant bacteria, we screened the Kitasato Institute for Life Sciences Chemical Library with bacterial quinol oxidase, which does not exist in the mitochondrial respiratory chain. We identified five prenylphenols, LL-Z1272beta, gamma, delta, epsilon and zeta, as new inhibitors for the Escherichia coli cytochrome bd. We found that these compounds also inhibited the E. coli bo-type ubiquinol oxidase and trypanosome alternative oxidase, although these three oxidases are structurally unrelated. LL-Z1272beta and epsilon (dechlorinated derivatives) were more active against cytochrome bd while LL-Z1272gamma, delta, and zeta (chlorinated derivatives) were potent inhibitors of cytochrome bo and trypanosome alternative oxidase. Thus prenylphenols are useful for the selective inhibition of quinol oxidases and for understanding the molecular mechanisms of respiratory quinol oxidases as a probe for the quinol oxidation site. Since quinol oxidases are absent from mammalian mitochondria, LL-Z1272beta and delta, which are less toxic to human cells, could be used as lead compounds for development of novel chemotherapeutic agents against pathogenic bacteria and African trypanosomiasis.


Assuntos
Antibacterianos/farmacologia , Benzaldeídos/farmacologia , Grupo dos Citocromos b/antagonistas & inibidores , Citocromos/antagonistas & inibidores , Complexo de Proteínas da Cadeia de Transporte de Elétrons/antagonistas & inibidores , Inibidores Enzimáticos/farmacologia , Proteínas de Escherichia coli/antagonistas & inibidores , Mitocôndrias/enzimologia , Oxirredutases/antagonistas & inibidores , Sesquiterpenos/farmacologia , Animais , Benzaldeídos/isolamento & purificação , Membrana Celular/metabolismo , Grupo dos Citocromos b/isolamento & purificação , Grupo dos Citocromos b/metabolismo , Citocromos/metabolismo , Vesículas Citoplasmáticas/metabolismo , Complexo de Proteínas da Cadeia de Transporte de Elétrons/metabolismo , Proteínas de Escherichia coli/isolamento & purificação , Proteínas de Escherichia coli/metabolismo , Proteínas Mitocondriais , Oxirredutases/metabolismo , Proteínas de Plantas , Sesquiterpenos/isolamento & purificação , Trypanosoma brucei brucei/enzimologia , Verticillium/química
9.
J Exp Med ; 180(1): 319-27, 1994 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-8006590

RESUMO

The study of tissue-derived Mycobacterium leprae provides insights to the immunopathology of leprosy and helps identify broad molecular features necessary for mycobacterial parasitism. A major membrane protein (MMP-II) of in vivo-derived M. leprae previously recognized (Hunter, S.W., B. Rivoire, V. Mehra, B.R. Bloom, and P.J. Brennan. 1990. J. Biol. Chem. 265:14065) was purified from extracts of the organism and partial amino acid sequence obtained. This information allowed recognition, within one of the cosmids that encompass the entire M. leprae genome, of a complete gene, bfr, encoding a protein of subunit size 18.2 kD. The amino acid sequence deduced from the major membrane protein II (MMP-II) gene revealed considerable homology to several bacterioferritins. Analysis of the native protein demonstrated the iron content, absorption spectrum, and large native molecular mass (380 kD) of several known bacterioferritins. The ferroxidase-center residues typical of ferritins were conserved in the M. leprae product. Oligonucleotides derived from the amino acid sequence of M. leprae bacterioferritin enabled amplification of much of the MMP-II gene and the detection of homologous sequences in Mycobacterium paratuberculosis, Mycobacterium avium, Mycobacterium tuberculosis, Mycobacterium intracellulare, and Mycobacterium scrofulaceum. The role of this iron-rich protein in the virulence of M. leprae is discussed.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Grupo dos Citocromos b/isolamento & purificação , Ferritinas/isolamento & purificação , Mycobacterium leprae/química , Sequência de Aminoácidos , Sequência de Bases , Grupo dos Citocromos b/química , Grupo dos Citocromos b/genética , Ferritinas/química , Ferritinas/genética , Dados de Sequência Molecular , Peso Molecular , Reação em Cadeia da Polimerase
10.
mBio ; 11(3)2020 06 30.
Artigo em Inglês | MEDLINE | ID: mdl-32605991

RESUMO

The integral membrane protein heme A synthase (HAS) catalyzes the biosynthesis of heme A, which is a prerequisite for cellular respiration in a wide range of aerobic organisms. Previous studies have revealed that HAS can form homo-oligomeric complexes, and this oligomerization appears to be evolutionarily conserved among prokaryotes and eukaryotes and is shown to be essential for the biological function of eukaryotic HAS. Despite its importance, little is known about the detailed structural properties of HAS oligomers. Here, we aimed to address this critical issue by analyzing the oligomeric state of HAS from Aquifex aeolicus (AaHAS) using a combination of techniques, including size exclusion chromatography coupled with multiangle light scattering (SEC-MALS), cross-linking, laser-induced liquid bead ion desorption mass spectrometry (LILBID-MS), and single-particle electron cryomicroscopy (cryo-EM). Our results show that HAS forms a thermostable trimeric complex. A cryo-EM density map provides information on the oligomerization interface of the AaHAS trimer. These results provide structural insights into HAS multimerization and expand our knowledge of this important enzyme.IMPORTANCE Heme A is a vital redox cofactor unique for the terminal cytochrome c oxidase in mitochondria and many microorganisms. It plays a key role in oxygen reduction by serving as an electron carrier and as the oxygen-binding site. Heme A is synthesized from heme O by an integral membrane protein, heme A synthase (HAS). Defects in HAS impair cellular respiration and have been linked to various human diseases, e.g., fatal infantile hypertrophic cardiomyopathy and Leigh syndrome. HAS exists as a stable oligomeric complex, and studies have shown that oligomerization of eukaryotic HAS is necessary for its proper function. However, the molecular architecture of the HAS oligomeric complex has remained uncharacterized. The present study shows that HAS forms trimers and reveals how the oligomeric arrangement contributes to the complex stability and flexibility, enabling HAS to perform its catalytic function effectively. This work provides the basic understanding for future studies on heme A biosynthesis.


Assuntos
Proteínas de Bactérias/química , Grupo dos Citocromos b/química , Proteínas de Membrana/química , Aquifex/enzimologia , Proteínas de Bactérias/isolamento & purificação , Grupo dos Citocromos b/isolamento & purificação , Heme/análogos & derivados , Heme/biossíntese , Proteínas de Membrana/isolamento & purificação , Modelos Moleculares , Oxigênio/metabolismo , Multimerização Proteica
11.
Biochim Biophys Acta Bioenerg ; 1861(5-6): 148175, 2020 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-32061652

RESUMO

Cytochrome bd, a component of the prokaryotic respiratory chain, is important under physiological stress and during pathogenicity. Electrons from quinol substrates are passed on via heme groups in the CydA subunit and used to reduce molecular oxygen. Close to the quinol binding site, CydA displays a periplasmic hydrophilic loop called Q-loop that is essential for quinol oxidation. In the carboxy-terminal part of this loop, CydA from Escherichia coli and other proteobacteria harbors an insert of ~60 residues with unknown function. In the current work, we demonstrate that growth of the multiple-deletion strain E. coli MB43∆cydA (∆cydA∆cydB∆appB∆cyoB∆nuoB) can be enhanced by transformation with E. coli cytochrome bd-I and we utilize this system for assessment of Q-loop mutants. Deletion of the cytochrome bd-I Q-loop insert abolished MB43∆cydA growth recovery. Swapping the cytochrome bd-I Q-loop for the Q-loop from Geobacillus thermodenitrificans or Mycobacterium tuberculosis CydA, which lack the insert, did not enhance the growth of MB43∆cydA, whereas swapping for the Q-loop from E. coli cytochrome bd-II recovered growth. Alanine scanning experiments identified the cytochrome bd-I Q-loop insert regions Ile318-Met322, Gln338-Asp342, Tyr353-Leu357, and Thr368-Ile372 as important for enzyme functionality. Those mutants that completely failed to recover growth of MB43∆cydA also lacked oxygen consumption activity and heme absorption peaks. Moreover, we were not able to isolate cytochrome bd-I from these inactive mutants. The results indicate that the cytochrome bd Q-loop exhibits low plasticity and that the Q-loop insert in E. coli is needed for complete, stable, assembly of cytochrome bd-I.


Assuntos
Grupo dos Citocromos b/química , Grupo dos Citocromos b/metabolismo , Complexo de Proteínas da Cadeia de Transporte de Elétrons/química , Complexo de Proteínas da Cadeia de Transporte de Elétrons/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Oxirredutases/química , Oxirredutases/metabolismo , Alanina/genética , Sequência de Aminoácidos , Membrana Celular/metabolismo , Grupo dos Citocromos b/isolamento & purificação , Complexo de Proteínas da Cadeia de Transporte de Elétrons/isolamento & purificação , Escherichia coli/crescimento & desenvolvimento , Proteínas de Escherichia coli/isolamento & purificação , Heme/metabolismo , Mutagênese/genética , Proteínas Mutantes/química , Proteínas Mutantes/isolamento & purificação , Proteínas Mutantes/metabolismo , Oxirredutases/isolamento & purificação , Consumo de Oxigênio , Estrutura Secundária de Proteína , Relação Estrutura-Atividade
12.
J Bacteriol ; 191(14): 4522-33, 2009 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19429618

RESUMO

The function of orf4 in the sigB cluster in Bacillus cereus ATCC 14579 remains to be explored. Amino-acid sequence analysis has revealed that Orf4 is homologous with bacterioferritins and Dps. In this study, we generated an orf4-null mutant and produced recombinant protein rOrf4 to establish the role of orf4. In vitro, the purified rOrf4 was found to exist in two distinct forms, a dimeric form and a polymer form, through size exclusion analysis. The latter form exhibited a unique filament structure, in contrast to the typical spherical tetracosamer structure of bacterioferritins; the former can be induced to form rOrf4 polymers immediately after the addition of FeCl(2). Catalysis of the oxidation of ferrous irons by ferroxidase activity was detected with rOrf4, and the mineralized irons were subsequently sequestered only in the rOrf4 polymer. Moreover, rOrf4 exerted DNA-protective activity against oxidative damage via DNA binding in a nonspecific manner, as is seen with Dps. In vivo, deletion of orf4 had no effect on activation of the alternative sigma factor sigma(B), and therefore, orf4 is not associated with sigma(B) regulation; however, orf4 can be significantly upregulated upon environmental stress but not H(2)O(2) treatment. B. cereus strains with constitutive Orf4 expression exhibited a viability higher than that of the orf4-null mutant, under specific oxidative stress or heat shock. Taken together, these results suggest that Orf4 functions as a Dps-like bacterioferritin in response to environmental stress and can provide cell protection from oxidative damage through iron sequestration and DNA binding.


Assuntos
Bacillus cereus/enzimologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Grupo dos Citocromos b/genética , Grupo dos Citocromos b/metabolismo , Ferritinas/genética , Ferritinas/metabolismo , Família Multigênica , Bacillus cereus/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Cloretos , Grupo dos Citocromos b/química , Grupo dos Citocromos b/isolamento & purificação , DNA Bacteriano/metabolismo , Proteínas de Ligação a DNA/genética , Compostos Férricos/metabolismo , Ferritinas/química , Ferritinas/isolamento & purificação , Deleção de Genes , Peróxido de Hidrogênio/toxicidade , Ferro/metabolismo , Viabilidade Microbiana , Estresse Oxidativo , Ligação Proteica , Multimerização Proteica , Fator sigma/metabolismo
13.
Biochim Biophys Acta ; 1777(12): 1501-9, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-18973745

RESUMO

Photosystem II (PSII) is a huge multi-protein-complex consisting, in higher plants and green algae, of the PS II core and the adjacent light harvesting proteins. In the study reported here, N-terminal His-tags were added to the plastome-encoded alpha-subunit of cytochrome b559, PsbE, in tobacco plants, thus facilitating rapid, mild purification of higher plant PSII. Biolistic chloroplast transformation was used to replace the wildtype psbE gene by His-tagged counterparts. Transgenic plants did not exhibit an obvious phenotype. However, the oxygen evolution capacity of thylakoids prepared from the mutants compared to the wildtype was reduced by 10-30% depending on the length of the His-tag, although Fv/Fm values differed only slightly. Homoplasmic F1 plants were used to isolate PSII cores complexes. The cores contained no detectable traces of LHC or PsaA/B polypeptides, but the main core subunits of PSII could be identified using immunodetection and mass spectroscopy. In addition, Psb27 and PsbS were detected. The presence of the former was presumably due to the preparation method, since PSII complexes located in the stroma are also isolated. In contrast to previous reports, PsbS was solely found as a monomer on SDS-PAGE in the PSII core complexes of tobacco.


Assuntos
Grupo dos Citocromos b/isolamento & purificação , Histidina/metabolismo , Nicotiana/genética , Nicotiana/metabolismo , Oligopeptídeos/metabolismo , Complexo de Proteína do Fotossistema II/isolamento & purificação , Plastídeos/genética , Subunidades Proteicas/isolamento & purificação , Grupo dos Citocromos b/metabolismo , Eletroforese em Gel de Ágar , Eletroforese em Gel de Poliacrilamida , Fluorescência , Genoma de Cloroplastos , Immunoblotting , Mutação/genética , Oxigênio/metabolismo , Complexo de Proteína do Fotossistema II/metabolismo , Proteínas de Plantas/metabolismo , Plantas Geneticamente Modificadas , Reação em Cadeia da Polimerase , Subunidades Proteicas/metabolismo , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Análise Espectral , Tilacoides/metabolismo
14.
J Biol Inorg Chem ; 14(2): 201-7, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18946693

RESUMO

The crystal structure of Escherichia coli bacterioferritin has been solved to 1.9 A, and shows the symmetrical binding of a haem molecule on the local twofold axis between subunits and a pair of metal atoms bound to each subunit at the ferroxidase centre. These metals have been identified as zinc by the analysis of the structure and X-ray data and confirmed by microfocused proton-induced X-ray emission experiments. For the first time the haem has been shown to be linked to both the internal and the external environments via a cluster of waters positioned above the haem molecule.


Assuntos
Proteínas de Bactérias/química , Grupo dos Citocromos b/química , Escherichia coli/química , Ferritinas/química , Heme/química , Zinco/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Ceruloplasmina/metabolismo , Cristalografia por Raios X , Grupo dos Citocromos b/genética , Grupo dos Citocromos b/isolamento & purificação , Grupo dos Citocromos b/metabolismo , Ferritinas/genética , Ferritinas/isolamento & purificação , Ferritinas/metabolismo , Modelos Moleculares , Estrutura Molecular , Conformação Proteica
15.
J Cell Biol ; 132(5): 823-33, 1996 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-8603915

RESUMO

Photosystem II (PS II) is a photosynthetic reaction center found in higher plants which has the unique ability to evolve oxygen from water. Several groups have formed two-dimensional PS II crystals or have isolated PS II complexes and studied them by electron microscopy and image analysis. The majority of these specimens have not been well characterized biochemically and have yielded relatively low resolution two-dimensional projection maps with a variety of unit cell sizes. We report the characterization of the polypeptide and lipid content of tubular crystals of PS II. The crystals contain the reaction center core polypeptides D1, D2, cytochrome b559, as well as the chlorophyll-binding polypeptides (CP) CP47, CP43, CP29, CP26, CP24, and CP22. The lipid composition was similar to the lipids found in the stacked portion of thylakoids. We also report a 2.0-nm resolution projection map determined by electron microscopy and image analysis of frozen, hydrated PS II crystals. This projection map includes information on the portion of the complex buried in the lipid bilayer. The unit cell is a dimer with unit vectors of 17.0 and 11.4 nm separated by an angle of 106.6 degrees. In addition, Fab fragments against D1 and cytochrome b559 were used to localize those two polypeptides, and thus the reaction center, within the PS II complex. The results indicate that D1 and cytochrome b559 are found within one of the heaviest densities of the monomeric unit.


Assuntos
Cloroplastos/química , Grupo dos Citocromos b/isolamento & purificação , Proteínas de Membrana/química , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/isolamento & purificação , Criopreservação , Cristalografia , Processamento de Imagem Assistida por Computador , Membranas Intracelulares/química , Complexos de Proteínas Captadores de Luz , Proteínas de Membrana/imunologia , Proteínas de Membrana/ultraestrutura , Microscopia Eletrônica , Coloração Negativa , Complexo de Proteínas do Centro de Reação Fotossintética/imunologia , Complexo de Proteínas do Centro de Reação Fotossintética/ultraestrutura , Complexo de Proteína do Fotossistema II , Spinacia oleracea/química
16.
Science ; 254(5039): 1794-6, 1991 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-1763330

RESUMO

Rap1A is a low molecular weight guanosine triphosphate (GTP)-binding protein in human neutrophil membranes whose cellular function is unknown. Rap1A was found to form stoichiometric complexes with the cytochrome b558 component of the phagocyte nicotinamide adenine dinucleotide phosphate (NADPH) oxidase system. The (guanosine-5'-O-(3-thiotriphosphate) (GTP-gamma-S)-bound form of Rap1A bound more tightly to cytochrome b558 than did the guanosine diphosphate-bound form. No complex formation was observed between cytochrome b558 and H-Ras-GTP-gamma-S or Rap1A-GTP-gamma-S that had been heat-inactivated, nor between Rap1A-GTP-gamma-S and hydrophobic proteins serving as controls. Complex formation between Rap1A-GTP-gamma-S and cytochrome b558 was inhibited by phosphorylation of Rap1A with cyclic adenosine monophosphate (cAMP)-dependent protein kinase. These observations suggest that Rap1A may participate in the structure or regulation of the NADPH oxidase system and that this function of the Rap1A protein may be altered by phosphorylation.


Assuntos
Grupo dos Citocromos b/metabolismo , Proteínas de Ligação ao GTP/metabolismo , NADH NADPH Oxirredutases/metabolismo , Sítios de Ligação , Cromatografia em Gel , Grupo dos Citocromos b/isolamento & purificação , Proteínas de Ligação ao GTP/antagonistas & inibidores , Proteínas de Ligação ao GTP/isolamento & purificação , Guanosina 5'-O-(3-Tiotrifosfato)/metabolismo , Humanos , Cinética , Substâncias Macromoleculares , NADPH Oxidases , Neutrófilos/enzimologia , Fosforilação , Ligação Proteica , Proteína Quinase C/metabolismo , Proteínas Proto-Oncogênicas/metabolismo , Proteínas Recombinantes/antagonistas & inibidores , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Proteínas rap de Ligação ao GTP
17.
Science ; 256(5062): 1459-62, 1992 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-1318579

RESUMO

The phagocyte respiratory burst oxidase is a flavin-adenine dinucleotide (FAD)-dependent dehydrogenase and an electron transferase that reduces molecular oxygen to superoxide anion, a precursor of microbicidal oxidants. Several proteins required for assembly of the oxidase have been characterized, but the identity of its flavin-binding component has been unclear. Oxidase activity was reconstituted in vitro with only the purified oxidase proteins p47phox, p67phox, Rac-related guanine nucleotide (GTP)-binding proteins, and membrane-bound cytochrome b558. The reconstituted oxidase required added FAD, and FAD binding was localized to cytochrome b558. Alignment of the amino acid sequence of the beta subunit of cytochrome b558 (gp91phox) with other flavoproteins revealed similarities to the nicotinamide adenine dinucleotide phosphate (reduced) (NADPH)-binding domains. Thus flavocytochrome b558 is the only obligate electron transporting component of the NADPH oxidase.


Assuntos
Grupo dos Citocromos b/sangue , NADH NADPH Oxirredutases/sangue , Neutrófilos/enzimologia , Fagócitos/enzimologia , Sequência de Aminoácidos , Animais , Sítios de Ligação , Linhagem Celular , Sistema Livre de Células , Grupo dos Citocromos b/genética , Grupo dos Citocromos b/isolamento & purificação , Ferredoxina-NADP Redutase/genética , Ferredoxina-NADP Redutase/metabolismo , Humanos , Insetos , Dados de Sequência Molecular , NADH NADPH Oxirredutases/genética , NADH NADPH Oxirredutases/isolamento & purificação , NADP/metabolismo , NADPH Oxidases , Plantas/enzimologia , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Homologia de Sequência do Ácido Nucleico , Superóxidos/sangue , Transfecção
18.
Methods Mol Biol ; 1982: 39-59, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31172465

RESUMO

Determination of the structure of human neutrophil (PMN) flavocytochrome b (Cytb) is a necessary step for the understanding of the structure-function essentials of NADPH oxidase activity. This understanding is crucial for structure-driven therapeutic approaches addressing control of inflammation and infection. Our work on purification and sample preparation of Cytb has facilitated progress toward the goal of structure determination. Here we describe exploiting immunoaffinity purification of Cytb for initial examination of its size and shape by a combination of classical and cryoelectron microscopic (EM) methods. For these evaluations, we used conventional negative-stain transmission electron microscopy (TEM) to examine both detergent-solubilized Cytb as single particles and Cytb in phosphatidylcholine reconstituted membrane vesicles as densely packed random, partially ordered, and subcrystalline arrays. In preliminary trials, we also examined single particles by cryoelectron microscopy (cryoEM) methods. We conclude that Cytb in detergent and reconstituted in membrane is a relatively compact, symmetrical protein of about 100 Å in maximum dimension. The negative stain, preliminary cryoEM, and crude molecular models suggest that the protein is probably a heterotetramer of two p22phox and gp91phox subunits in both detergent micelles and membrane vesicles. This exploratory study also suggests that high-resolution 2D electron microscopic approaches may be accessible to human material collected from single donors.


Assuntos
Separação Celular/métodos , Grupo dos Citocromos b/metabolismo , Microscopia Eletrônica , NADPH Oxidases/metabolismo , Neutrófilos/metabolismo , Neutrófilos/ultraestrutura , Anticorpos Monoclonais , Biomarcadores , Microscopia Crioeletrônica , Grupo dos Citocromos b/química , Grupo dos Citocromos b/isolamento & purificação , Estabilidade Enzimática , Humanos , Lipossomos/química , Lipossomos/metabolismo , Lipossomos/ultraestrutura , Microscopia Eletrônica/métodos , NADPH Oxidases/química , NADPH Oxidases/isolamento & purificação , Neutrófilos/imunologia
19.
J Immunol Methods ; 329(1-2): 201-7, 2008 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-17996248

RESUMO

Human neutrophil flavocytochrome b (Cyt b) is a heterodimeric, integral membrane protein that generates high levels of superoxide in the multisubunit NADPH oxidase complex. Since Cyt b is currently isolated in limited quantities, improved methods for purification from low levels of starting membranes (from both neutrophils and other expressing cell types) are important for the analysis of structure and catalytic mechanism. In the present study, the epitope-mapped monoclonal antibody CS9 was coupled to Sepharose beads and used as an affinity matrix for single-step immunoaffinity purification of Cyt b. Following solubilization of both human neutrophil and PLB-985 membrane fractions in the nonionic detergent octylglucoside, Cyt b was absorbed on the CS9-Sepharose affinity matrix and purified protein was eluted under non-denaturing conditions with an epitope-mimicking peptide. The high efficiency of this isolation procedure allowed Cyt b to be reproducibly purified from readily obtainable levels of starting membrane fractions (9x10(8) cell equivalents of neutrophil membranes and 2x10(9) cell equivalents of PLB-985 membranes). Since Cyt b could be affinity-purified in the detergent octylglucoside, high-level functional reconstitution was carried out directly on elution fractions by simple addition of solubilized phospholipid and subsequent dialysis for detergent removal. To our knowledge, this study describes the most efficient method for generating purified, functionally-reconstituted Cyt b and should facilitate analyses that require a highly-defined NADPH oxidase system.


Assuntos
Anticorpos Monoclonais/metabolismo , Membrana Celular/enzimologia , Cromatografia de Afinidade , Cromatografia em Agarose , Grupo dos Citocromos b/isolamento & purificação , NADPH Oxidases/isolamento & purificação , Neutrófilos/enzimologia , Especificidade de Anticorpos , Domínio Catalítico , Linhagem Celular Tumoral , Membrana Celular/imunologia , Grupo dos Citocromos b/imunologia , Grupo dos Citocromos b/metabolismo , Detergentes/química , Epitopos , Glucosídeos/química , Humanos , Membranas Artificiais , NADPH Oxidases/imunologia , NADPH Oxidases/metabolismo , Neutrófilos/imunologia , Peptídeos/imunologia , Fosfolipídeos/química , Reprodutibilidade dos Testes , Solubilidade , Superóxidos/metabolismo
20.
Biochem Soc Trans ; 36(Pt 6): 1239-41, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19021532

RESUMO

Dcytb (duodenal cytochrome b) is an iron-regulated ferric reductase highly expressed in duodenal enterocytes. Its location and strong regulation by iron has indicated it plays an important role in iron absorption. Expression of Dcytb in cells (Caco-2 and MDCK) was found to increase both ferric reductase activity and stimulate uptake of (59)Fe. An additional increase in cupric reductase activity was found in MDCK (Madin-Darby canine kidney) cells expressing Dcytb. Expression and purification of Dcytb in insect cells reveals that Dcytb is a di-haem protein and that the haems are reducible by ascorbate, indicating that ascorbate is the likely intracelluar electron donor. Studies underway in Dcytb-knockout mice reveal that Dcytb is the only iron-regulated ferric reductase in the duodenal mucosa and that loss of Dcytb affects iron absorption.


Assuntos
Grupo dos Citocromos b/metabolismo , Duodeno/metabolismo , Ferro/metabolismo , Animais , Grupo dos Citocromos b/isolamento & purificação , Humanos
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