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1.
Immunity ; 46(6): 1005-1017.e5, 2017 06 20.
Artigo em Inglês | MEDLINE | ID: mdl-28636951

RESUMO

CCR5 is the primary chemokine receptor utilized by HIV to infect leukocytes, whereas CCR5 ligands inhibit infection by blocking CCR5 engagement with HIV gp120. To guide the design of improved therapeutics, we solved the structure of CCR5 in complex with chemokine antagonist [5P7]CCL5. Several structural features appeared to contribute to the anti-HIV potency of [5P7]CCL5, including the distinct chemokine orientation relative to the receptor, the near-complete occupancy of the receptor binding pocket, the dense network of intermolecular hydrogen bonds, and the similarity of binding determinants with the FDA-approved HIV inhibitor Maraviroc. Molecular modeling indicated that HIV gp120 mimicked the chemokine interaction with CCR5, providing an explanation for the ability of CCR5 to recognize diverse ligands and gp120 variants. Our findings reveal that structural plasticity facilitates receptor-chemokine specificity and enables exploitation by HIV, and provide insight into the design of small molecule and protein inhibitors for HIV and other CCR5-mediated diseases.


Assuntos
Quimiocina CCL5/química , Proteína gp120 do Envelope de HIV/química , Infecções por HIV/imunologia , HIV-1/fisiologia , Modelos Moleculares , Mimetismo Molecular , Receptores CCR5/química , Animais , Antagonistas dos Receptores CCR5/química , Antagonistas dos Receptores CCR5/farmacologia , Quimiocina CCL5/metabolismo , Clonagem Molecular , Cristalografia por Raios X , Cicloexanos/química , Cicloexanos/farmacologia , Proteína gp120 do Envelope de HIV/metabolismo , Inibidores da Fusão de HIV/química , Infecções por HIV/tratamento farmacológico , Humanos , Maraviroc , Ligação Proteica , Conformação Proteica , Receptores CCR5/metabolismo , Células Sf9 , Spodoptera , Relação Estrutura-Atividade , Triazóis/química , Triazóis/farmacologia , Internalização do Vírus/efeitos dos fármacos
2.
Nature ; 565(7739): 318-323, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30542158

RESUMO

HIV-1 envelope glycoprotein (Env), which consists of trimeric (gp160)3 cleaved to (gp120 and gp41)3, interacts with the primary receptor CD4 and a coreceptor (such as chemokine receptor CCR5) to fuse viral and target-cell membranes. The gp120-coreceptor interaction has previously been proposed as the most crucial trigger for unleashing the fusogenic potential of gp41. Here we report a cryo-electron microscopy structure of a full-length gp120 in complex with soluble CD4 and unmodified human CCR5, at 3.9 Å resolution. The V3 loop of gp120 inserts into the chemokine-binding pocket formed by seven transmembrane helices of CCR5, and the N terminus of CCR5 contacts the CD4-induced bridging sheet of gp120. CCR5 induces no obvious allosteric changes in gp120 that can propagate to gp41; it does bring the Env trimer close to the target membrane. The N terminus of gp120, which is gripped by gp41 in the pre-fusion or CD4-bound Env, flips back in the CCR5-bound conformation and may irreversibly destabilize gp41 to initiate fusion. The coreceptor probably functions by stabilizing and anchoring the CD4-induced conformation of Env near the cell membrane. These results advance our understanding of HIV-1 entry into host cells and may guide the development of vaccines and therapeutic agents.


Assuntos
Antígenos CD4/química , Antígenos CD4/ultraestrutura , Proteína gp120 do Envelope de HIV/química , Proteína gp120 do Envelope de HIV/ultraestrutura , Receptores CCR5/química , Receptores CCR5/ultraestrutura , Receptores de HIV/química , Receptores de HIV/ultraestrutura , Fármacos Anti-HIV/química , Fármacos Anti-HIV/metabolismo , Sítios de Ligação , Antígenos CD4/isolamento & purificação , Antígenos CD4/metabolismo , Linhagem Celular , Quimiocina CCL5/química , Quimiocina CCL5/metabolismo , Proteína gp120 do Envelope de HIV/isolamento & purificação , Proteína gp120 do Envelope de HIV/metabolismo , Proteína gp41 do Envelope de HIV/química , Proteína gp41 do Envelope de HIV/metabolismo , Proteína gp41 do Envelope de HIV/ultraestrutura , Humanos , Ligantes , Maraviroc/química , Maraviroc/metabolismo , Modelos Moleculares , Ligação Proteica , Conformação Proteica , Receptores CCR5/isolamento & purificação , Receptores CCR5/metabolismo , Receptores de HIV/antagonistas & inibidores , Receptores de HIV/metabolismo
3.
Int J Mol Sci ; 21(5)2020 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-32121575

RESUMO

CC-type chemokine ligand 5 (CCL5) has been known to regulate immune responses by mediating the chemotaxis of leukocytes. Depending on the environment, CCL5 forms different orders of oligomers to interact with targets and create functional diversity. A recent CCL5 trimer structure revealed that the N-terminal conversed F12-A13-Y14 (12FAY14) sequence is involved in CCL5 aggregation. The CCL5-12AAA14 mutant with two mutations had a deficiency in the formation of high-order oligomers. In the study, we clarify the respective roles of F12 and Y14 through NMR analysis and structural determination of the CCL5-12AAA14 mutant where F12 is involved in the dimer assembly and Y14 is involved in aggregation. The CCL5-12AAA14 structure contains a unique dimer packing. The backbone pairing shifts for one-residue in the N-terminal interface, when compared to the native CCL5 dimer. This difference creates a new structural orientation and leads to the conclusion that F12 confines the native CCL5 dimer configuration. Without F12 anchoring in the position, the interfacial backbone pairing is permitted to slide. Structural plasticity occurs in the N-terminal interaction. This is the first case to report this structural rearrangement through mutagenesis. The study provides a new idea for chemokine engineering and complements the understanding of CCL5 oligomerization and the role of the 12FAY14 sequence.


Assuntos
Quimiocina CCL5/química , Quimiocina CCL5/metabolismo , Proteínas Mutantes/química , Proteínas Mutantes/metabolismo , Multimerização Proteica , Sequência de Aminoácidos , Cristalografia por Raios X , Humanos , Espectroscopia de Ressonância Magnética , Mutação/genética , Estrutura Secundária de Proteína , Homologia Estrutural de Proteína , Sulfatos/metabolismo
4.
J Biol Chem ; 293(49): 19092-19100, 2018 12 07.
Artigo em Inglês | MEDLINE | ID: mdl-30305389

RESUMO

Peptides represent a promising source of new medicines, but improved technologies are needed to facilitate discovery and optimization campaigns. In particular, longer peptides with multiple disulfide bridges are challenging to produce, and producing large numbers of structurally related variants is dissuasively costly and time-consuming. The principal cost and time drivers are the multiple column chromatography purification steps that are used during the multistep chemical synthesis procedure, which involves both ligation and oxidative refolding steps. In this study, we developed a method for multiplex parallel synthesis of complex peptide analogs in which the structurally variant region of the molecule is produced as a small peptide on a 384-well synthesizer with subsequent ligation to the longer, structurally invariant region and oxidative refolding carried out in-well without any column purification steps. To test the method, we used a panel of 96 analogs of the chemokine RANTES (regulated on activation normal T cell expressed and secreted)/CCL5 (69 residues, two disulfide bridges), which had been synthesized using standard approaches and characterized pharmacologically in an earlier study. Although, as expected, the multiplex method generated chemokine analogs of lower purity than those produced in the original study, it was nonetheless possible to closely match the pharmacological attributes (anti-HIV potency, capacity to elicit G protein signaling, and capacity to elicit intracellular receptor sequestration) of each chemokine analog to reference data from the earlier study. This rapid, low-cost approach has the potential to support discovery and optimization campaigns based on analogs of other chemokines as well as those of other complex peptide and small protein targets of a similar size.


Assuntos
Quimiocina CCL5/síntese química , Animais , Fármacos Anti-HIV/síntese química , Fármacos Anti-HIV/química , Fármacos Anti-HIV/farmacologia , Células CHO , Técnicas de Química Sintética/economia , Técnicas de Química Sintética/métodos , Quimiocina CCL5/química , Quimiocina CCL5/farmacologia , Cricetulus , Células HEK293 , Humanos , Oxirredução , Dobramento de Proteína , Receptores CCR5/agonistas
5.
Proc Natl Acad Sci U S A ; 113(18): 5000-5, 2016 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-27091995

RESUMO

CC chemokine ligand 5 (CCL5) and CCL3 are critical for immune surveillance and inflammation. Consequently, they are linked to the pathogenesis of many inflammatory conditions and are therapeutic targets. Oligomerization and glycosaminoglycan (GAG) binding of CCL5 and CCL3 are vital for the functions of these chemokines. Our structural and biophysical analyses of human CCL5 reveal that CCL5 oligomerization is a polymerization process in which CCL5 forms rod-shaped, double-helical oligomers. This CCL5 structure explains mutational data and offers a unified mechanism for CCL3, CCL4, and CCL5 assembly into high-molecular-weight, polydisperse oligomers. A conserved, positively charged BBXB motif is key for the binding of CC chemokines to GAG. However, this motif is partially buried when CCL3, CCL4, and CCL5 are oligomerized; thus, the mechanism by which GAG binds these chemokine oligomers has been elusive. Our structures of GAG-bound CCL5 and CCL3 oligomers reveal that these chemokine oligomers have distinct GAG-binding mechanisms. The CCL5 oligomer uses another positively charged and fully exposed motif, KKWVR, in GAG binding. However, residues from two partially buried BBXB motifs along with other residues combine to form a GAG-binding groove in the CCL3 oligomer. The N termini of CC chemokines are shown to be involved in receptor binding and oligomerization. We also report an alternative CCL3 oligomer structure that reveals how conformational changes in CCL3 N termini profoundly alter its surface properties and dimer-dimer interactions to affect GAG binding and oligomerization. Such complexity in oligomerization and GAG binding enables intricate, physiologically relevant regulation of CC chemokine functions.


Assuntos
Quimiocina CCL3/química , Quimiocina CCL3/ultraestrutura , Quimiocina CCL5/química , Quimiocina CCL5/ultraestrutura , Glicosaminoglicanos/química , Sítios de Ligação , Dimerização , Humanos , Ligação Proteica , Conformação Proteica , Relação Estrutura-Atividade
6.
Biochemistry ; 57(1): 136-148, 2018 01 09.
Artigo em Inglês | MEDLINE | ID: mdl-29202246

RESUMO

Many human proteins have the potential to be developed as therapeutic agents. However, side effects caused by direct administration of natural proteins have significantly slowed expansion of protein therapeutics into the clinic. Post-translational modifications (PTMs) can improve protein properties, but because of significant knowledge gaps, we are considerably limited in our ability to apply PTMs to generate better protein therapeutics. Here, we seek to fill the gaps by studying the PTMs of a small representative chemotactic cytokine, RANTES. RANTES can inhibit HIV-1 infection by competing with it for binding to receptor CCR5 and stimulating CCR5 endocytosis. Unfortunately, RANTES can induce strong signaling, leading to severe inflammatory side effects. We apply a chemical biology approach to explore the potential of post-translationally modified RANTES as safe inhibitors of HIV-1 infection. We synthesized and systematically tested a library of RANTES isoforms for their ability to inhibit inflammatory signaling and prevent HIV-1 infection of primary human cells. Through this research, we revealed that most of the glycosylated variants have decreased inflammation-associated properties and identified one particular glyco variant, a truncated RANTES containing a Galß1-3GalNAc disaccharide α-linked to Ser4, which stands out as having the best overall properties: relatively high HIV-1 inhibition potency but also weak inflammatory properties. Moreover, our results provided a structural basis for the observed changes in the properties of RANTES. Taken together, this work highlights the potential importance of glycosylation as an alternative strategy for developing CCR5 inhibitors to treat HIV-1 infection and, more generally, for reducing or eliminating unwanted properties of therapeutic proteins.


Assuntos
Quimiocina CCL5/química , Quimiocina CCL5/farmacologia , Inibidores da Fusão de HIV/química , Inibidores da Fusão de HIV/farmacologia , HIV-1/efeitos dos fármacos , Processamento de Proteína Pós-Traducional , Acilação , Biopolímeros , Espectroscopia de Ressonância Magnética Nuclear de Carbono-13 , Quimiocina CCL5/efeitos adversos , Quimiocina CCL5/metabolismo , Quimiotaxia de Leucócito/efeitos dos fármacos , Glicosaminoglicanos/metabolismo , Glicosilação , Inibidores da Fusão de HIV/efeitos adversos , Inibidores da Fusão de HIV/metabolismo , Infecções por HIV/tratamento farmacológico , HIV-1/fisiologia , Humanos , Espectroscopia de Prótons por Ressonância Magnética , Receptores CCR5/metabolismo , Células THP-1
7.
J Biol Chem ; 290(25): 15421-15436, 2015 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-25907556

RESUMO

Interactions between chemokines such as CCL5 and glycosaminoglycans (GAGs) are essential for creating haptotactic gradients to guide the migration of leukocytes into inflammatory sites, and the GAGs that interact with CCL5 with the highest affinity are heparan sulfates/heparin. The interaction between CCL5 and its receptor on monocytes, CCR1, is mediated through residues Arg-17 and -47 in CCL5, which overlap with the GAG-binding (44)RKNR(47) "BBXB" motifs. Here we report that heparin and tetrasaccharide fragments of heparin are able to inhibit CCL5-CCR1 binding, with IC50 values showing strong dependence on the pattern and extent of sulfation. Modeling of the CCL5-tetrasaccharide complexes suggested that interactions between specific sulfate and carboxylate groups of heparin and residues Arg-17 and -47 of the protein are essential for strong inhibition; tetrasaccharides lacking the specific sulfation pattern were found to preferentially bind CCL5 in positions less favorable for inhibition of the interaction with CCR1. Simulations of a 12-mer heparin fragment bound to CCL5 indicated that the oligosaccharide preferred to interact simultaneously with both (44)RKNR(47) motifs in the CCL5 homodimer and engaged residues Arg-47 and -17 from both chains. Direct engagement of these residues by the longer heparin oligosaccharide provides a rationalization for its effectiveness as an inhibitor of CCL5-CCR1 interaction. In this mode, histidine (His-23) may contribute to CCL5-GAG interactions when the pH drops just below neutral, as occurs during inflammation. Additionally, an examination of the contribution of pH to modulating CCL5-heparin interactions suggested a need for careful interpretation of experimental results when experiments are performed under non-physiological conditions.


Assuntos
Quimiocina CCL5/química , Heparina/química , Oligossacarídeos/química , Motivos de Aminoácidos , Quimiocina CCL5/genética , Quimiocina CCL5/metabolismo , Heparina/metabolismo , Humanos , Concentração de Íons de Hidrogênio , Oligossacarídeos/metabolismo , Ligação Proteica , Receptores CCR1/química , Receptores CCR1/genética , Receptores CCR1/metabolismo
8.
Bioconjug Chem ; 27(1): 42-6, 2016 Jan 20.
Artigo em Inglês | MEDLINE | ID: mdl-26649643

RESUMO

Chemical reaction rates are generally decreased at lower temperatures. Here, we report that an oxime ligation reaction in water at neutral pH is accelerated by freezing. The freezing method and its rate effect on oxime ligation are systematically studied on a peptide model system, and applied to a larger chemokine protein, containing a single acetyl butyrate group, which is conjugated to an aminooxy-labeled ligand. Our improved ligation protocol now makes it possible to efficiently introduce oxime-bond coupled ligands into proteins under aqueous conditions at low concentrations and neutral pH.


Assuntos
Quimiocina CCL5/química , Oximas/química , Peptídeos/química , Butiratos/química , Catálise , Congelamento , Concentração de Íons de Hidrogênio , Cetonas/química , Ligantes , Lisina/química , Temperatura , Termodinâmica , Água/química
9.
J Biol Chem ; 289(46): 31846-31855, 2014 Nov 14.
Artigo em Inglês | MEDLINE | ID: mdl-25266725

RESUMO

To elucidate the ligand-binding surface of the CC chemokine-binding proteins Evasin-1 and Evasin-4, produced by the tick Rhipicephalus sanguineus, we sought to identify the key determinants responsible for their different chemokine selectivities by expressing Evasin mutants using phage display. We first designed alanine mutants based on the Evasin-1·CCL3 complex structure and an in silico model of Evasin-4 bound to CCL3. The mutants were displayed on M13 phage particles, and binding to chemokine was assessed by ELISA. Selected variants were then produced as purified proteins and characterized by surface plasmon resonance analysis and inhibition of chemotaxis. The method was validated by confirming the importance of Phe-14 and Trp-89 to the inhibitory properties of Evasin-1 and led to the identification of a third crucial residue, Asn-88. Two amino acids, Glu-16 and Tyr-19, were identified as key residues for binding and inhibition of Evasin-4. In a parallel approach, we identified one clone (Y28Q/N60D) that showed a clear reduction in binding to CCL3, CCL5, and CCL8. It therefore appears that Evasin-1 and -4 use different pharmacophores to bind CC chemokines, with the principal binding occurring through the C terminus of Evasin-1, but through the N-terminal region of Evasin-4. However, both proteins appear to target chemokine N termini, presumably because these domains are key to receptor signaling. The results also suggest that phage display may offer a useful approach for rapid investigation of the pharmacophores of small inhibitory binding proteins.


Assuntos
Quimiocinas CC/química , Receptores de Quimiocinas/química , Alanina/química , Sequência de Aminoácidos , Animais , Movimento Celular , Quimiocina CCL3/química , Quimiocina CCL5/química , Quimiocina CCL5/genética , Quimiocina CCL8/química , Quimiotaxia , Cristalografia por Raios X , Ensaio de Imunoadsorção Enzimática , Glicosilação , Células HEK293 , Humanos , Ligantes , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Biblioteca de Peptídeos , Ligação Proteica , Estrutura Terciária de Proteína , Rhipicephalus sanguineus , Homologia de Sequência de Aminoácidos , Ressonância de Plasmônio de Superfície
10.
J Biol Chem ; 289(10): 6592-6603, 2014 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-24482230

RESUMO

Chemokines play important roles in the immune system, not only recruiting leukocytes to the site of infection and inflammation but also guiding cell homing and cell development. The soluble poxvirus-encoded protein viral CC chemokine inhibitor (vCCI), a CC chemokine inhibitor, can bind to human CC chemokines tightly to impair the host immune defense. This protein has no known homologs in eukaryotes and may represent a potent method to stop inflammation. Previously, our structure of the vCCI·MIP-1ß (macrophage inflammatory protein-1ß) complex indicated that vCCI uses negatively charged residues in ß-sheet II to interact with positively charged residues in the MIP-1ß N terminus, 20s region and 40s loop. However, the interactions between vCCI and other CC chemokines have not yet been fully explored. Here, we used NMR and fluorescence anisotropy to study the interaction between vCCI and eotaxin-1 (CCL11), a CC chemokine that is an important factor in the asthma response. NMR results reveal that the binding pattern is very similar to the vCCI·MIP-1ß complex and suggest that electrostatic interactions provide a major contribution to binding. Fluorescence anisotropy results on variants of eotaxin-1 further confirm the critical roles of the charged residues in eotaxin-1. In addition, the binding affinity between vCCI and other wild type CC chemokines, MCP-1 (monocyte chemoattractant protein-1), MIP-1ß, and RANTES (regulated on activation normal T cell expressed and secreted), were determined as 1.1, 1.2, and 0.22 nm, respectively. To our knowledge, this is the first work quantitatively measuring the binding affinity between vCCI and multiple CC chemokines.


Assuntos
Quimiocina CCL11/imunologia , Proteínas Virais/imunologia , Fatores de Virulência/imunologia , Sequência de Aminoácidos , Quimiocina CCL11/química , Quimiocina CCL11/genética , Quimiocina CCL2/química , Quimiocina CCL2/imunologia , Quimiocina CCL4/química , Quimiocina CCL4/imunologia , Quimiocina CCL5/química , Quimiocina CCL5/imunologia , Humanos , Inflamação/imunologia , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica/imunologia , Estrutura Secundária de Proteína , Proteínas Virais/química , Fatores de Virulência/química
11.
Histochem Cell Biol ; 142(1): 69-77, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24623038

RESUMO

G protein-coupled receptor activation and desensitization leads to recruitment of arrestin proteins from cytosolic pools to the cell membrane where they form clusters difficult to characterize due to their small size and further mediate receptor internalization. We quantitatively investigated clustering of arrestin 3 induced by potent anti-HIV analogues of the chemokine RANTES after stimulation of the C-C chemokine receptor 5 using single-molecule localization-based super-resolution microscopy. We determined arrestin 3 cluster sizes and relative fractions of arrestin 3 molecules in each cluster through image-based analysis of the localization data by adapting a method originally developed for co-localization analysis from molecular coordinates. We found that only classical agonists in the set of tested ligands were able to efficiently recruit arrestin 3 to clusters mostly larger than 150 nm in size and compare our results with existing data on arrestin 2 clustering induced by the same chemokine analogues.


Assuntos
Arrestinas/análise , Quimiocina CCL5/química , Quimiocina CCL5/farmacologia , Receptores CCR5/agonistas , Animais , Arrestinas/metabolismo , Células CHO , Bovinos , Células Cultivadas , Cricetulus , Microscopia Confocal , Microscopia de Fluorescência , Transporte Proteico/efeitos dos fármacos
12.
Bioorg Med Chem Lett ; 24(16): 3744-7, 2014 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-25052428

RESUMO

The highly constitutively active G protein-coupled receptor US28 of human cytomegalovirus (HCMV) is thought to camouflage agonism by mediating constitutive endocytosis. With the use of the US28Δ300 mutant, which is largely devoid of constitutive internalization, I have demonstrated that the coupling of the receptor to its downstream signaling partners is responsible for the inverse agonism to agonism efficacy switch in some small-weight ligands of US28.


Assuntos
Quimiocina CCL5/farmacologia , Quimiocina CX3CL1/farmacologia , Piperidinas/farmacologia , Receptores de Quimiocinas/agonistas , Proteínas Virais/agonistas , Regulação Alostérica/efeitos dos fármacos , Quimiocina CCL5/química , Quimiocina CX3CL1/química , Relação Dose-Resposta a Droga , Células HEK293 , Humanos , Ligantes , Estrutura Molecular , Peso Molecular , Piperidinas/química , Receptores de Quimiocinas/genética , Relação Estrutura-Atividade , Proteínas Virais/genética
13.
FEBS J ; 291(3): 458-476, 2024 02.
Artigo em Inglês | MEDLINE | ID: mdl-37997026

RESUMO

CC and CXC chemokines are distinct chemokine subfamilies. CC chemokines usually do not bind CXC-chemokine receptors and vice versa. CCR5 and CXCR4 receptors are activated by CCL5 and CXCL12 chemokines, respectively, and are also used as HIV-1 coreceptors. CCL5 contains one conserved binding site for a sulfated tyrosine residue, whereas CXCL12 is unique in having two additional sites for sulfated/nonsulfated tyrosine residues. In this study, N-terminal (Nt) CXCR4 peptides were found to bind CCL5 with somewhat higher affinities in comparison to those of short Nt-CCR5(8-20) peptides with the same number of sulfated tyrosine residues. Similarly, a long Nt-CCR5(1-27)(s Y3,s Y10,s Y14) peptide cross reacts with CXCL12 and with lower KD in comparison to its binding to CCL5. Intermolecular nuclear overhauser effect (NOE) measurements were used to decipher the mechanism of the chemokine/Nt-receptor peptide binding. The Nt-CXCR4 peptides interact with the conserved CCL5 tyrosine sulfate-binding site by an allovalency mechanism like that observed for CCL5 binding of Nt-CCR5 peptides. Nt-CCR5 peptides bind CXCL12 in multiple modes analogous to their binding to HIV-1 gp120 and interact with all three tyrosine/sulfated tyrosine-binding pockets of CXCL12. We suggest that the chemokine-receptors Nt-segments bind promiscuously to cognate and non-cognate chemokines and in a mechanism that is dependent on the number of binding pockets for tyrosine residues found on the chemokine. In conclusion, common features shared among the chemokine-receptors' Nt-segments such as multiple tyrosine residues that are potentially sulfated, and a large number of negatively charged residues are the reason of the cross binding observed in this study.


Assuntos
Quimiocina CCL5 , Receptores CXCR4 , Quimiocina CCL5/química , Receptores CXCR4/metabolismo , Receptores CCR5/química , Quimiocina CXCL12 , Peptídeos/química , Tirosina
14.
Planta Med ; 78(10): 968-73, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22648377

RESUMO

Influenza virus is one of the most important causes of acute respiratory disease. Viral infection and viral replication activate multiple cell signalling pathways. Apoptosis of infected cells and immune response against viral replication, which are generally considered to be protective mechanisms, are also probably mediated by viruses, which lead to severe health problems. We previously reported that 3-deoxysappanchalcone (3-DSC), a compound that is isolated from Caesalpinia sappan, exhibited in vitro anti-influenza activity. In the present study, we further identified that 3-DSC inhibited viral genomic replication and transcription only at a relatively high concentration. We then evaluated the effect of 3-DSC on the regulation of virus-induced cellular apoptosis. 3-DSC ameliorated virus-induced DNA fragmentation in a concentration-dependent manner, which tends to be a consequence of its inhibition of upstream caspase activation. 3-DSC also protected host cells against influenza-induced inflammation by suppressing CCL5 and CXCL10 secretions in endothelial cells and reducing the production of IL-6 and IL-1ß in monocytes/macrophages. In conclusion, our results demonstrate that anti-influenza virus mechanisms of 3-DSC involved anti-apoptosis and anti-inflammation activities in vitro. Moreover, 3-DSC could be a promising drug candidate for influenza treatment.


Assuntos
Apoptose , Chalconas/farmacologia , Citoproteção , Inflamação/virologia , Vírus da Influenza A Subtipo H1N1/patogenicidade , Animais , Anti-Inflamatórios não Esteroides/química , Anti-Inflamatórios não Esteroides/farmacologia , Antivirais/química , Antivirais/farmacologia , Caesalpinia/química , Caspases/efeitos dos fármacos , Linhagem Celular Tumoral , Chalconas/química , Quimiocina CCL5/química , Quimiocina CXCL10/química , Fragmentação do DNA/efeitos dos fármacos , Cães , Relação Dose-Resposta a Droga , Avaliação Pré-Clínica de Medicamentos , Ativação Enzimática , Genoma Viral/efeitos dos fármacos , Humanos , Vírus da Influenza A Subtipo H1N1/genética , Vírus da Influenza A Subtipo H1N1/fisiologia , Transcrição Gênica/efeitos dos fármacos , Replicação Viral
15.
Methods Cell Biol ; 169: 115-141, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35623699

RESUMO

The numerous chemokines and their cognate G protein-coupled chemokine receptors on the surface of leukocytes form a complex signaling network, which regulates the immune response and also other key physiological processes. Currently only a very limited number of structures of chemokine•chemokine receptor complexes have been solved. More structures are needed for the understanding of their mechanism of action and the rational design of drugs against these highly relevant therapeutic targets. Recently, we have determined the cryo-EM structure of the human wild-type CCR5 chemokine receptor, which is also the HIV-1 coreceptor, in its active conformation bound to the chemokine super-agonist [6P4]CCL5 and the heterotrimeric Gi protein. The structure provides the rationale for the sequence-activity relation of agonist and antagonist CCR5 chemokine ligands. In this chapter, we present a detailed protocol for the preparation of the active agonist chemokine•CCR5•Gi complex for cryo-EM studies including quality controls and caveats. As such the protocol may serve as starting point for structural and biophysical studies of other chemokine•chemokine receptor complexes.


Assuntos
Receptores CCR5 , Transdução de Sinais , Quimiocina CCL5/química , Quimiocinas/metabolismo , Microscopia Crioeletrônica , Humanos , Receptores CCR5/química , Receptores CCR5/metabolismo , Receptores Acoplados a Proteínas G
16.
Front Immunol ; 13: 826418, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35126399

RESUMO

The large number of pathologies that position CCR5 as a central molecular determinant substantiates the studies aimed at understanding receptor-ligand interactions, as well as the development of compounds that efficiently block this receptor. This perspective focuses on CCR5 antagonism as the preferred landscape for therapeutic intervention, thus the receptor active site occupancy by known antagonists of different origins is overviewed. CCL5 is a natural agonist ligand for CCR5 and an extensively studied scaffold for CCR5 antagonists production through chemokine N-terminus modification. A retrospective 3D modeling analysis on recently developed CCL5 mutants and their contribution to enhanced anti-HIV-1 activity is reported here. These results allow us to prospect the development of conceptually novel amino acid substitutions outside the CCL5 N-terminus hotspot. CCR5 interaction improvement in regions distal to the chemokine N-terminus, as well as the stabilization of the chemokine hydrophobic core are strategies that influence binding affinity and stability beyond the agonist/antagonist dualism. Furthermore, the development of allosteric antagonists topologically remote from the orthosteric site (e.g., intracellular or membrane-embedded) is an intriguing new avenue in GPCR druggability and thus a conceivable novel direction for CCR5 blockade. Ultimately, the three-dimensional structure elucidation of the interaction between various ligands and CCR5 helps illuminate the active site occupancy and mechanism of action.


Assuntos
Antagonistas dos Receptores CCR5/farmacologia , Quimiocina CCL5/química , HIV-1/fisiologia , Modelos Moleculares , Receptores CCR5/química , Animais , Antagonistas dos Receptores CCR5/química , Quimiocina CCL5/metabolismo , Infecções por HIV/tratamento farmacológico , Infecções por HIV/imunologia , Humanos , Ligantes , Ligação Proteica , Receptores CCR5/metabolismo
17.
Proc Natl Acad Sci U S A ; 105(46): 17706-11, 2008 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-19004761

RESUMO

New prevention strategies for use in developing countries are urgently needed to curb the worldwide HIV/AIDS epidemic. The N-terminally modified chemokine PSC-RANTES is a highly potent entry inhibitor against R5-tropic HIV-1 strains, with an inhibitory mechanism involving long-term intracellular sequestration of the HIV coreceptor, CCR5. PSC-RANTES is fully protective when applied topically in a macaque model of vaginal HIV transmission, but it has 2 potential disadvantages related to further development: the requirement for chemical synthesis adds to production costs, and its strong CCR5 agonist activity might induce local inflammation. It would thus be preferable to find a recombinant analogue that retained the high potency of PSC-RANTES but lacked its agonist activity. Using a strategy based on phage display, we set out to discover PSC-RANTES analogs that contain only natural amino acids. We sought molecules that retain the potency and inhibitory mechanism of PSC-RANTES, while trying to reduce CCR5 signaling to as low a level as possible. We identified 3 analogues, all of which exhibit in vitro potency against HIV-1 comparable to that of PSC-RANTES. The first, 6P4-RANTES, resembles PSC-RANTES in that it is a strong agonist that induces prolonged intracellular sequestration of CCR5. The second, 5P12-RANTES, has no detectable G protein-linked signaling activity and does not bring about receptor sequestration. The third, 5P14-RANTES, induces significant levels of CCR5 internalization without detectable G protein-linked signaling activity. These 3 molecules represent promising candidates for further development as topical HIV prevention strategies.


Assuntos
Anti-Infecciosos/economia , Anti-Infecciosos/farmacologia , Antivirais/farmacologia , Quimiocinas/farmacologia , HIV/efeitos dos fármacos , Engenharia de Proteínas , Proteínas Recombinantes/farmacologia , Quimiocina CCL5/química , Endocitose/efeitos dos fármacos , Células HeLa , Humanos , Leucócitos Mononucleares/efeitos dos fármacos , Leucócitos Mononucleares/virologia , Receptores CCR5/metabolismo , Receptores Virais/metabolismo , Reprodutibilidade dos Testes , Transdução de Sinais/efeitos dos fármacos
18.
Sci Adv ; 7(25)2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34134983

RESUMO

The human CC chemokine receptor 5 (CCR5) is a G protein-coupled receptor (GPCR) that plays a major role in inflammation and is involved in cancer, HIV, and COVID-19. Despite its importance as a drug target, the molecular activation mechanism of CCR5, i.e., how chemokine agonists transduce the activation signal through the receptor, is yet unknown. Here, we report the cryo-EM structure of wild-type CCR5 in an active conformation bound to the chemokine super-agonist [6P4]CCL5 and the heterotrimeric Gi protein. The structure provides the rationale for the sequence-activity relation of agonist and antagonist chemokines. The N terminus of agonist chemokines pushes onto specific structural motifs at the bottom of the orthosteric pocket that activate the canonical GPCR microswitch network. This activation mechanism differs substantially from other CC chemokine receptors that bind chemokines with shorter N termini in a shallow binding mode involving unique sequence signatures and a specialized activation mechanism.


Assuntos
Receptores CCR5/química , Receptores CCR5/metabolismo , Quimiocina CCL5/química , Quimiocina CCL5/metabolismo , Microscopia Crioeletrônica , Humanos , Modelos Moleculares , Simulação de Dinâmica Molecular , Conformação Proteica , Receptores CCR5/agonistas , Receptores CCR5/genética , Transdução de Sinais , Relação Estrutura-Atividade
19.
Nat Commun ; 12(1): 4151, 2021 07 06.
Artigo em Inglês | MEDLINE | ID: mdl-34230484

RESUMO

The chemokine receptor CCR5 plays a vital role in immune surveillance and inflammation. However, molecular details that govern its endogenous chemokine recognition and receptor activation remain elusive. Here we report three cryo-electron microscopy structures of Gi1 protein-coupled CCR5 in a ligand-free state and in complex with the chemokine MIP-1α or RANTES, as well as the crystal structure of MIP-1α-bound CCR5. These structures reveal distinct binding modes of the two chemokines and a specific accommodate pattern of the chemokine for the distal N terminus of CCR5. Together with functional data, the structures demonstrate that chemokine-induced rearrangement of toggle switch and plasticity of the receptor extracellular region are critical for receptor activation, while a conserved tryptophan residue in helix II acts as a trigger of receptor constitutive activation.


Assuntos
Quimiocinas/química , Quimiocinas/metabolismo , Receptores CCR5/química , Receptores CCR5/metabolismo , Sítios de Ligação , Quimiocina CCL3/metabolismo , Quimiocina CCL5/química , Quimiocina CCL5/metabolismo , Microscopia Crioeletrônica , Ligantes , Modelos Moleculares , Conformação Proteica , Receptores CCR5/genética
20.
FEBS J ; 288(5): 1648-1663, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-32814359

RESUMO

The N-terminal segment of the chemokine receptor Human CC chemokine receptor 5 (CCR5), Nt-CCR5, contains four tyrosine residues, Y3, Y10, Y14, and Y15. Sulfation of at least two of these tyrosine residues was found to be essential for high-affinity binding of CCR5 to its chemokine ligands. Here, we show that among the monosulfated Nt-CCR5(8-20) peptide surrogates (sNt-CCR5) those sulfated at Y15 and Y14 have the highest affinity for the CC chemokine ligand 5 (CCL5) chemokine in comparison with monosulfation at position Y10. Sulfation at Y3 was not investigated. A peptide sulfated at both Y14 and Y15 has the highest affinity for CCL5 by up to a factor of 3, in comparison with the other disulfated (sNt-CCR5) peptides. Chemical shift perturbation analysis and transferred nuclear Overhauser effect measurements indicate that the sulfated tyrosine residues interact with the same CCL5-binding pocket and that each of the sulfated tyrosines at positions 10, 14, and 15 can occupy individually the binding site on CCL5 in a similar manner, although with somewhat different affinity, suggesting the possibility of allovalency in sulfated Nt-CCR5 peptides. The affinity of the disulfated peptides to CCL5 could be increased by this allovalency and by stronger electrostatic interactions.


Assuntos
Quimiocina CCL5/química , Processamento de Proteína Pós-Traducional , Receptores CCR5/química , Sulfatos/química , Tirosina/química , Sequência de Aminoácidos , Sítios de Ligação , Quimiocina CCL5/genética , Quimiocina CCL5/metabolismo , Expressão Gênica , Humanos , Ligantes , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica , Conformação Proteica , Domínios e Motivos de Interação entre Proteínas , Receptores CCR5/genética , Receptores CCR5/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Eletricidade Estática , Sulfatos/metabolismo , Tirosina/metabolismo
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