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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink, Marc F; Velankar, Sameer; Kryshtafovych, Andriy; Huang, Shen-You; Schneidman-Duhovny, Dina; Sali, Andrej; Segura, Joan; Fernandez-Fuentes, Narcis; Viswanath, Shruthi; Elber, Ron; Grudinin, Sergei; Popov, Petr; Neveu, Emilie; Lee, Hasup; Baek, Minkyung; Park, Sangwoo; Heo, Lim; Rie Lee, Gyu; Seok, Chaok; Qin, Sanbo; Zhou, Huan-Xiang; Ritchie, David W; Maigret, Bernard; Devignes, Marie-Dominique; Ghoorah, Anisah; Torchala, Mieczyslaw; Chaleil, Raphaël A G; Bates, Paul A; Ben-Zeev, Efrat; Eisenstein, Miriam; Negi, Surendra S; Weng, Zhiping; Vreven, Thom; Pierce, Brian G; Borrman, Tyler M; Yu, Jinchao; Ochsenbein, Françoise; Guerois, Raphaël; Vangone, Anna; Rodrigues, João P G L M; van Zundert, Gydo; Nellen, Mehdi; Xue, Li; Karaca, Ezgi; Melquiond, Adrien S J; Visscher, Koen; Kastritis, Panagiotis L; Bonvin, Alexandre M J J; Xu, Xianjin; Qiu, Liming.
Afiliación
  • Lensink MF; University Lille, CNRS UMR8576 UGSF, Lille, F-59000, France. marc.lensink@univ-lille1.fr.
  • Velankar S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.
  • Kryshtafovych A; Genome Center, University of California, Davis, California, 95616.
  • Huang SY; Research Support Computing, University of Missouri Bioinformatics Consortium, and Department of Computer Science, University of Missouri, Columbia, Missouri, 65211.
  • Schneidman-Duhovny D; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, California, 94158.
  • Sali A; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, 94158.
  • Segura J; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, California, 94158.
  • Fernandez-Fuentes N; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, 94158.
  • Viswanath S; California Institute for Quantitative Biosciences (QB3), University of California San Francisco, San Francisco, California, 94158.
  • Elber R; GN7 of the National Institute for Bioinformatics (INB) and Biocomputing Unit, National Center of Biotechnology (CSIC), Madrid, 28049, Spain.
  • Grudinin S; Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, SY233FG, United Kingdom.
  • Popov P; Department of Computer Science, University of Texas at Austin, Austin, Texas, 78712.
  • Neveu E; Institute for Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas, 78712.
  • Lee H; Institute for Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas, 78712.
  • Baek M; Department of Chemistry, University of Texas at Austin, Austin, Texas, 78712.
  • Park S; LJK, University Grenoble Alpes, CNRS, Grenoble, 38000, France.
  • Heo L; INRIA, Grenoble, 38000, France.
  • Rie Lee G; LJK, University Grenoble Alpes, CNRS, Grenoble, 38000, France.
  • Seok C; INRIA, Grenoble, 38000, France.
  • Qin S; Moscow Institute of Physics and Technology, Dolgoprudniy, Russia.
  • Zhou HX; LJK, University Grenoble Alpes, CNRS, Grenoble, 38000, France.
  • Ritchie DW; INRIA, Grenoble, 38000, France.
  • Maigret B; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Devignes MD; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Ghoorah A; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Torchala M; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Chaleil RA; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Bates PA; Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea.
  • Ben-Zeev E; Department of Physics and Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida, 32306, USA.
  • Eisenstein M; Department of Physics and Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida, 32306, USA.
  • Negi SS; INRIA Nancy-Grand Est, Villers-lès-Nancy, 54600, France.
  • Weng Z; CNRS, LORIA, Campus Scientifique, BP 239, Vandœuvre-lès-Nancy, 54506, France.
  • Vreven T; CNRS, LORIA, Campus Scientifique, BP 239, Vandœuvre-lès-Nancy, 54506, France.
  • Pierce BG; Department of Computer Science and Engineering, University of Mauritius, Reduit, Mauritius.
  • Borrman TM; Biomolecular Modelling Laboratory, the Francis Crick Institute, Lincoln's Inn Fields Laboratory, London, WC2A 3LY, United Kingdom.
  • Yu J; Biomolecular Modelling Laboratory, the Francis Crick Institute, Lincoln's Inn Fields Laboratory, London, WC2A 3LY, United Kingdom.
  • Ochsenbein F; Biomolecular Modelling Laboratory, the Francis Crick Institute, Lincoln's Inn Fields Laboratory, London, WC2A 3LY, United Kingdom.
  • Guerois R; G-INCPM, Weizmann Institute of Science, Rehovot, 7610001, Israel.
  • Vangone A; Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, 7610001, Israel.
  • Rodrigues JP; Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, 301 University Boulevard, Galveston, Texas, 77555-0857.
  • van Zundert G; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01605.
  • Nellen M; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01605.
  • Xue L; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01605.
  • Karaca E; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01605.
  • Melquiond AS; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, University Paris-Saclay, CEA-Saclay, Gif-sur-Yvette, 91191, France.
  • Visscher K; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, University Paris-Saclay, CEA-Saclay, Gif-sur-Yvette, 91191, France.
  • Kastritis PL; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, University Paris-Saclay, CEA-Saclay, Gif-sur-Yvette, 91191, France.
  • Bonvin AM; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
  • Xu X; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
  • Qiu L; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
Proteins ; 84 Suppl 1: 323-48, 2016 09.
Article en En | MEDLINE | ID: mdl-27122118
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Proteínas / Modelos Estadísticos / Biología Computacional / Simulación de Dinámica Molecular / Simulación del Acoplamiento Molecular Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: Proteins Asunto de la revista: BIOQUIMICA Año: 2016 Tipo del documento: Article País de afiliación: Francia
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Proteínas / Modelos Estadísticos / Biología Computacional / Simulación de Dinámica Molecular / Simulación del Acoplamiento Molecular Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: Proteins Asunto de la revista: BIOQUIMICA Año: 2016 Tipo del documento: Article País de afiliación: Francia