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Databases and Associated Tools for Glycomics and Glycoproteomics.
Lisacek, Frederique; Mariethoz, Julien; Alocci, Davide; Rudd, Pauline M; Abrahams, Jodie L; Campbell, Matthew P; Packer, Nicolle H; Ståhle, Jonas; Widmalm, Göran; Mullen, Elaine; Adamczyk, Barbara; Rojas-Macias, Miguel A; Jin, Chunsheng; Karlsson, Niclas G.
Afiliación
  • Lisacek F; Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
  • Mariethoz J; Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
  • Alocci D; Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
  • Rudd PM; NIBRT GlycoScience Group, NIBRT-The National Institute for Bioprocessing Research and Training, Fosters Avenue, Mount Merrion, Blackrock, Co., Dublin, Ireland.
  • Abrahams JL; Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW, Australia.
  • Campbell MP; Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW, Australia.
  • Packer NH; Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW, Australia.
  • Ståhle J; Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden.
  • Widmalm G; Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden.
  • Mullen E; The MITRE Corporation, McLean, VA, USA.
  • Adamczyk B; NIBRT GlycoScience Group, NIBRT-The National Institute for Bioprocessing Research and Training, Fosters Avenue, Mount Merrion, Blackrock, Co., Dublin, Ireland.
  • Rojas-Macias MA; Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Box 440, 405 30, Gothenburg, Sweden.
  • Jin C; Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Box 440, 405 30, Gothenburg, Sweden.
  • Karlsson NG; Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Box 440, 405 30, Gothenburg, Sweden.
Methods Mol Biol ; 1503: 235-264, 2017.
Article en En | MEDLINE | ID: mdl-27743371
ABSTRACT
The access to biodatabases for glycomics and glycoproteomics has proven to be essential for current glycobiological research. This chapter presents available databases that are devoted to different aspects of glycobioinformatics. This includes oligosaccharide sequence databases, experimental databases, 3D structure databases (of both glycans and glycorelated proteins) and association of glycans with tissue, disease, and proteins. Specific search protocols are also provided using tools associated with experimental databases for converting primary glycoanalytical data to glycan structural information. In particular, researchers using glycoanalysis methods by U/HPLC (GlycoBase), MS (GlycoWorkbench, UniCarb-DB, GlycoDigest), and NMR (CASPER) will benefit from this chapter. In addition we also include information on how to utilize glycan structural information to query databases that associate glycans with proteins (UniCarbKB) and with interactions with pathogens (SugarBind).
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Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Polisacáridos / Glicoproteínas / Proteómica / Glicómica Tipo de estudio: Risk_factors_studies Límite: Animals / Humans Idioma: En Revista: Methods Mol Biol Asunto de la revista: BIOLOGIA MOLECULAR Año: 2017 Tipo del documento: Article País de afiliación: Suiza
Buscar en Google
Imprimir
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PubMed Links

Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Polisacáridos / Glicoproteínas / Proteómica / Glicómica Tipo de estudio: Risk_factors_studies Límite: Animals / Humans Idioma: En Revista: Methods Mol Biol Asunto de la revista: BIOLOGIA MOLECULAR Año: 2017 Tipo del documento: Article País de afiliación: Suiza