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A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.
Jones, Wendell; Gong, Binsheng; Novoradovskaya, Natalia; Li, Dan; Kusko, Rebecca; Richmond, Todd A; Johann, Donald J; Bisgin, Halil; Sahraeian, Sayed Mohammad Ebrahim; Bushel, Pierre R; Pirooznia, Mehdi; Wilkins, Katherine; Chierici, Marco; Bao, Wenjun; Basehore, Lee Scott; Lucas, Anne Bergstrom; Burgess, Daniel; Butler, Daniel J; Cawley, Simon; Chang, Chia-Jung; Chen, Guangchun; Chen, Tao; Chen, Yun-Ching; Craig, Daniel J; Del Pozo, Angela; Foox, Jonathan; Francescatto, Margherita; Fu, Yutao; Furlanello, Cesare; Giorda, Kristina; Grist, Kira P; Guan, Meijian; Hao, Yingyi; Happe, Scott; Hariani, Gunjan; Haseley, Nathan; Jasper, Jeff; Jurman, Giuseppe; Kreil, David Philip; Labaj, Pawel; Lai, Kevin; Li, Jianying; Li, Quan-Zhen; Li, Yulong; Li, Zhiguang; Liu, Zhichao; López, Mario Solís; Miclaus, Kelci; Miller, Raymond; Mittal, Vinay K.
Afiliación
  • Jones W; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA. Wendell.Jones@q2labsolutions.com.
  • Gong B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Novoradovskaya N; Agilent Technologies, 11011 N Torrey Pines Rd., La Jolla, CA, 92037, USA.
  • Li D; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Kusko R; Immuneering Corporation, One Broadway, 14th Floor, Cambridge, MA, 02142, USA.
  • Richmond TA; Market & Application Development Bioinformatics, Roche Sequencing Solutions Inc., 4300 Hacienda Dr., Pleasanton, CA, 94588, USA.
  • Johann DJ; Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301 W Markham St., Little Rock, AR, 72205, USA.
  • Bisgin H; Department of Computer Science, Engineering and Physics, University of Michigan-Flint, Flint, MI, 48502, USA.
  • Sahraeian SME; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., 1301 Shoreway Rd., Suite 7 #300, Belmont, CA, 94002, USA.
  • Bushel PR; National Institute of Environmental Health Sciences, Research Triangle Park, Durham, NC, 27709, USA.
  • Pirooznia M; Bioinformatics and Computational Biology Laboratory, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
  • Wilkins K; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA.
  • Chierici M; Fondazione Bruno Kessler, 38123, Trento, Italy.
  • Bao W; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA.
  • Basehore LS; Agilent Technologies, 11011 N Torrey Pines Rd., La Jolla, CA, 92037, USA.
  • Lucas AB; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA.
  • Burgess D; (formerly) Research and Development, Roche Sequencing Solutions Inc., 500 South Rosa Rd., Madison, WI, 53719, USA.
  • Butler DJ; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA.
  • Cawley S; (formerly) Clinical Sequencing Division, Thermo Fisher Scientific, 180 Oyster Point Blvd., South San Francisco, CA, 94080, USA.
  • Chang CJ; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA.
  • Chen G; Department of Immunology, Genomics and Microarray Core Facility, University of Texas Southwestern Medical Center, 5323 Harry Hine Blvd., Dallas, TX, 75390, USA.
  • Chen T; University of Texas Southwestern Medical Center, 2330 Inwood Rd., Dallas, TX, 75390, USA.
  • Chen YC; Bioinformatics and Computational Biology Laboratory, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
  • Craig DJ; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA.
  • Del Pozo A; Institute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, CIBERER Instituto de Salud Carlos III, 28046, Madrid, Spain.
  • Foox J; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA.
  • Francescatto M; Fondazione Bruno Kessler, 38123, Trento, Italy.
  • Fu Y; Thermo Fisher Scientific, 110 Miller Ave., Ann Arbor, MI, 48104, USA.
  • Furlanello C; Fondazione Bruno Kessler, 38123, Trento, Italy.
  • Giorda K; Marketing, Integrated DNA Technologies, Inc., 1710 Commercial Park, Coralville, IA, 52241, USA.
  • Grist KP; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA.
  • Guan M; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA.
  • Hao Y; College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, China.
  • Happe S; Agilent Technologies, 1834 State Hwy 71 West, Cedar Creek, TX, 78612, USA.
  • Hariani G; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA.
  • Haseley N; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
  • Jasper J; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA.
  • Jurman G; Fondazione Bruno Kessler, 38123, Trento, Italy.
  • Kreil DP; Bioinformatics Research, Institute of Molecular Biotechnology, Boku University Vienna, Vienna, Austria.
  • Labaj P; Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.
  • Lai K; Department of Biotechnology, Boku University, Vienna, Austria.
  • Li J; Bioinformatics, Integrated DNA Technologies, Inc., 1710 Commercial Park, Coralville, IA, 52241, USA.
  • Li QZ; Kelly Government Solutions, Inc., Research Triangle Park, NC, 27709, USA.
  • Li Y; Department of Immunology, Genomics and Microarray Core Facility, University of Texas Southwestern Medical Center, 5323 Harry Hine Blvd., Dallas, TX, 75390, USA.
  • Li Z; Center of Genome and Personalized Medicine, Institute of Cancer Stem Cell, Dalian Medical University, Dalian, Liaoning, China.
  • Liu Z; Center of Genome and Personalized Medicine, Institute of Cancer Stem Cell, Dalian Medical University, Dalian, Liaoning, China.
  • López MS; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Miclaus K; Institute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, CIBERER Instituto de Salud Carlos III, 28046, Madrid, Spain.
  • Miller R; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.
  • Mittal VK; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA.
Genome Biol ; 22(1): 111, 2021 04 16.
Article en En | MEDLINE | ID: mdl-33863366
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Variación Genética / Biomarcadores de Tumor / Pruebas Genéticas / Genómica / Alelos / Frecuencia de los Genes / Neoplasias Tipo de estudio: Diagnostic_studies / Prognostic_studies Límite: Humans Idioma: En Revista: Genome Biol Asunto de la revista: BIOLOGIA MOLECULAR / GENETICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Variación Genética / Biomarcadores de Tumor / Pruebas Genéticas / Genómica / Alelos / Frecuencia de los Genes / Neoplasias Tipo de estudio: Diagnostic_studies / Prognostic_studies Límite: Humans Idioma: En Revista: Genome Biol Asunto de la revista: BIOLOGIA MOLECULAR / GENETICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos