Gene Coverage Count and Classification (GC<sub>3</sub>): a locus sequence coverage assessment tool using short-read whole genome sequencing data, and its application to identify and classify histidine-rich protein 2 and 3 deletions in Plasmodium falciparum.

Stabler, Thomas C; Dwivedi, Ankit; Shrestha, Biraj; Joshi, Sudhaunshu; Schindler, Tobias; Ouattara, Amed; García, Guillermo A; Daubenberger, Claudia; Silva, Joana C

Gene Coverage Count and Classification (GC₃): a locus sequence coverage assessment tool using short-read whole genome sequencing data, and its application to identify and classify histidine-rich protein 2 and 3 deletions in Plasmodium falciparum.

Stabler, Thomas C; Dwivedi, Ankit; Shrestha, Biraj; Joshi, Sudhaunshu; Schindler, Tobias; Ouattara, Amed; García, Guillermo A; Daubenberger, Claudia; Silva, Joana C.

Afiliación

Stabler TC; Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland. thomas.stabler@swisstph.ch.
Dwivedi A; University of Basel, Basel, Switzerland. thomas.stabler@swisstph.ch.
Shrestha B; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.
Joshi S; Malaria Research Program, Center for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, MD, USA.
Schindler T; Malaria Research Program, Center for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, MD, USA.
Ouattara A; Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
García GA; University of Basel, Basel, Switzerland.
Daubenberger C; Malaria Research Program, Center for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, MD, USA.
Silva JC; Medical Care Development International, Silver Spring, MD, USA.

Malar J ; 21(1): 357, 2022 Nov 29.

Article en En | MEDLINE | ID: mdl-36447234

Asunto(s)

Histidina; Comportamiento del Uso de la Herramienta; Plasmodium falciparum/genética; Secuenciación Completa del Genoma; Genotipo

Palabras clave

Bioinformatics; Deletion; Gene coverage; Genomics; Malaria; Rapid Diagnostic Test; hrp2; hrp3

Texto completo

Imprimir

XML

PubMed Links

Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Comportamiento del Uso de la Herramienta / Histidina Idioma: En Revista: Malar J Asunto de la revista: MEDICINA TROPICAL Año: 2022 Tipo del documento: Article País de afiliación: Suiza

Texto completo

Imprimir

XML

PubMed Links

Buscar en Google