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Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.
Larivière, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristóbal; Grüning, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R; Chaisson, Mark J P; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O'Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; van den Beek, Marius; Williams, Robert W; Waterhouse, Robert M; Phillippy, Adam M; Jarvis, Erich D; Schatz, Michael C; Nekrutenko, Anton; Formenti, Giulio.
Afiliación
  • Larivière D; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
  • Abueg L; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Brajuka N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Gallardo-Alba C; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany.
  • Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany.
  • Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
  • Ostrovsky A; Departments of Biology and Computer Science, Johns Hopkins University, Baltimore, MD, USA.
  • Palmada-Flores M; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain.
  • Pickett BD; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
  • Rabbani K; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
  • Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.
  • Balacco JR; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal.
  • Chaisson MJP; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Cheng H; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
  • Collins J; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.
  • Couture M; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Denisova A; Wellcome Sanger Institute, Cambridge, UK.
  • Fedrigo O; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Gallo GR; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
  • Giani AM; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Gooder GM; Department of Biosciences, University of Milan, Milan, Italy.
  • Horan K; BMRI, Weill Cornell Medical College, New York, NY, USA.
  • Jain N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Johnson C; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Kim H; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Lee C; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Marques-Bonet T; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
  • O'Toole B; eGnome, Inc., Seoul, Republic of Korea.
  • Rhie A; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.
  • Secomandi S; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.
  • Sozzoni M; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.
  • Tilley T; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain.
  • Uliano-Silva M; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.
  • van den Beek M; CNAG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Williams RW; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
  • Waterhouse RM; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
  • Jarvis ED; Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus.
  • Schatz MC; University of Florence, Department of Biology, Florence, Italy.
  • Nekrutenko A; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
  • Formenti G; Tree of Life, Wellcome Sanger Institute, Cambridge, UK.
Nat Biotechnol ; 42(3): 367-370, 2024 Mar.
Article en En | MEDLINE | ID: mdl-38278971
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Biología Computacional Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Biología Computacional Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos