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The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data.
Kopczynski, Dominik; Ejsing, Christer S; McDonald, Jeffrey G; Bamba, Takeshi; Baker, Erin S; Bertrand-Michel, Justine; Brügger, Britta; Coman, Cristina; Ellis, Shane R; Garrett, Timothy J; Griffiths, William J; Guan, Xue Li; Han, Xianlin; Höring, Marcus; Holcapek, Michal; Hoffmann, Nils; Huynh, Kevin; Lehmann, Rainer; Jones, Jace W; Kaddurah-Daouk, Rima; Köfeler, Harald C; Meikle, Peter J; Metz, Thomas O; O'Donnell, Valerie B; Saigusa, Daisuke; Schwudke, Dominik; Shevchenko, Andrej; Torta, Federico; Vizcaíno, Juan Antonio; Welti, Ruth; Wenk, Markus R; Wolrab, Denise; Xia, Yu; Ekroos, Kim; Ahrends, Robert; Liebisch, Gerhard.
Afiliación
  • Kopczynski D; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria.
  • Ejsing CS; Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark; Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
  • McDonald JG; Center for Human Nutrition and Department of Molecular Genetics, UT Southwestern Medical Center, Dallas, Texas, USA.
  • Bamba T; Division of Metabolomics/Mass Spectrometry Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
  • Baker ES; Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
  • Bertrand-Michel J; MetaboHUB-Metatoul, National Infrastructure of Metabolomics and Fluxomics, Inserm I2MC, Toulouse, France.
  • Brügger B; Heidelberg University Biochemistry Center (BZH), University of Heidelberg, Heidelberg, Germany.
  • Coman C; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria.
  • Ellis SR; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, Australia.
  • Garrett TJ; Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, USA.
  • Griffiths WJ; Swansea University Medical School, Swansea, Wales, UK.
  • Guan XL; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.
  • Han X; Barshop Institute for Longevity and Aging Studies, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
  • Höring M; Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany.
  • Holcapek M; Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Pardubice, Czech Republic.
  • Hoffmann N; Institute for Bio- and Geosciences (IBG-5), Forschungszentrum Jülich GmbH, Jülich, Germany.
  • Huynh K; Baker Heart and Diabetes Institute, Melbourne, VIC, Australia; Department of Cardiovascular Research Translation and Implementation, La Trobe University, Bundoora, VIC, Australia.
  • Lehmann R; Institute for Clinical Chemistry and Pathobiochemistry, Department for Diagnostic Laboratory Medicine, University Hospital Tuebingen, Tuebingen, Germany.
  • Jones JW; Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland, USA.
  • Kaddurah-Daouk R; Department of Psychiatry and Behavioural Sciences, Duke University, Durham, North Carolina, USA; Duke Institute of Brain Sciences, Duke University, Durham, North Carolina, USA; Department of Medicine, Duke University, Durham, North Carolina, USA.
  • Köfeler HC; Core Facility Mass Spectrometry and Lipidomics, ZMF, Medical University of Graz, Graz, Austria.
  • Meikle PJ; Baker Heart and Diabetes Institute, Melbourne, VIC, Australia; Department of Cardiovascular Research Translation and Implementation, La Trobe University, Bundoora, VIC, Australia.
  • Metz TO; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
  • O'Donnell VB; Systems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff, UK.
  • Saigusa D; Laboratory of Biomedical and Analytical Sciences, Faculty of Pharma-Science, Teikyo University, Tokyo, Japan.
  • Schwudke D; Division of Bioanalytical Chemistry, Research Center Borstel - Leibniz Lung Center, Borstel, Germany; German Center for Infection Research, Thematic Translational Unit Tuberculosis, Partner Site Hamburg-Lübeck-Borstel-Riems, Germany; German Center for Lung Research (DZL), Airway Research Center Nort
  • Shevchenko A; Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
  • Torta F; Singapore Lipidomics Incubator (SLING), Department of Biochemistry, YLL School of Medicine, National University of Singapore, Singapore, Singapore; Signature Research Program in Cardiovascular and Metabolic Disorders, Duke-NUS Medical School, Singapore, Singapore.
  • Vizcaíno JA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
  • Welti R; Kansas Lipidomics Research Center, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
  • Wenk MR; Singapore Lipidomics Incubator (SLING), Department of Biochemistry, YLL School of Medicine, National University of Singapore, Singapore, Singapore.
  • Wolrab D; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria.
  • Xia Y; MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing, China.
  • Ekroos K; Lipidomics Consulting Ltd., Esbo, Finland. Electronic address: kim@lipidomicsconsulting.com.
  • Ahrends R; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria. Electronic address: robert.ahrends@univie.ac.at.
  • Liebisch G; Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany. Electronic address: gerhard.liebisch@ukr.de.
J Lipid Res ; 65(9): 100621, 2024 Sep.
Article en En | MEDLINE | ID: mdl-39151590
ABSTRACT
The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Lista de Verificación / Lipidómica Límite: Humans Idioma: En Revista: J Lipid Res Año: 2024 Tipo del documento: Article País de afiliación: Austria
Texto completo
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Lista de Verificación / Lipidómica Límite: Humans Idioma: En Revista: J Lipid Res Año: 2024 Tipo del documento: Article País de afiliación: Austria