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LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields.
Kratz, Eric G; Walker, Alice R; Lagardère, Louis; Lipparini, Filippo; Piquemal, Jean-Philip; Andrés Cisneros, G.
Afiliação
  • Kratz EG; Department of Chemistry, Wayne State University, Detroit, Michigan, 48202.
  • Walker AR; Department of Chemistry, Wayne State University, Detroit, Michigan, 48202.
  • Lagardère L; Laboratoire De Chimie Théorique, UPMC Univ. Paris 06, UMR 7617, Paris, F-75005, France.
  • Lipparini F; Institut Du Calcul Et De La Simulation, UPMC Univ. Paris 06, Paris, F-75005, France.
  • Piquemal JP; Institut Fur Physikalische Chemie, Universitat Mainz, Duesbergweg 10-14, Mainz, D-55128, Germany.
  • Andrés Cisneros G; Laboratoire De Chimie Théorique, UPMC Univ. Paris 06, UMR 7617, Paris, F-75005, France.
J Comput Chem ; 37(11): 1019-29, 2016 Apr 30.
Article em En | MEDLINE | ID: mdl-26781073
ABSTRACT
We introduce an initial implementation of the LICHEM software package. LICHEM can interface with Gaussian, PSI4, NWChem, TINKER, and TINKER-HP to enable QM/MM calculations using multipolar/polarizable force fields. LICHEM extracts forces and energies from unmodified QM and MM software packages to perform geometry optimizations, single-point energy calculations, or Monte Carlo simulations. When the QM and MM regions are connected by covalent bonds, the pseudo-bond approach is employed to smoothly transition between the QM region and the polarizable force field. A series of water clusters and small peptides have been employed to test our initial implementation. The results obtained from these test systems show the capabilities of the new software and highlight the importance of including explicit polarization. © 2016 Wiley Periodicals, Inc.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Teoria Quântica / Software Tipo de estudo: Health_economic_evaluation Idioma: En Revista: J Comput Chem Assunto da revista: QUIMICA Ano de publicação: 2016 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Teoria Quântica / Software Tipo de estudo: Health_economic_evaluation Idioma: En Revista: J Comput Chem Assunto da revista: QUIMICA Ano de publicação: 2016 Tipo de documento: Article