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Minimum Information about an Uncultivated Virus Genome (MIUViG).
Roux, Simon; Adriaenssens, Evelien M; Dutilh, Bas E; Koonin, Eugene V; Kropinski, Andrew M; Krupovic, Mart; Kuhn, Jens H; Lavigne, Rob; Brister, J Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K; Bordenstein, Seth R; Bork, Peer; Breitbart, Mya; Cochrane, Guy R; Daly, Rebecca A; Desnues, Christelle; Duhaime, Melissa B; Emerson, Joanne B; Enault, François; Fuhrman, Jed A; Hingamp, Pascal; Hugenholtz, Philip; Hurwitz, Bonnie L; Ivanova, Natalia N; Labonté, Jessica M; Lee, Kyung-Bum; Malmstrom, Rex R; Martinez-Garcia, Manuel; Mizrachi, Ilene Karsch; Ogata, Hiroyuki; Páez-Espino, David; Petit, Marie-Agnès; Putonti, Catherine; Rattei, Thomas; Reyes, Alejandro; Rodriguez-Valera, Francisco; Rosario, Karyna; Schriml, Lynn; Schulz, Frederik; Steward, Grieg F; Sullivan, Matthew B; Sunagawa, Shinichi; Suttle, Curtis A; Temperton, Ben; Tringe, Susannah G; Thurber, Rebecca Vega; Webster, Nicole S; Whiteson, Katrine L.
Afiliação
  • Roux S; US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
  • Adriaenssens EM; Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
  • Dutilh BE; Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, the Netherlands.
  • Koonin EV; Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, Nijmegen, the Netherlands.
  • Kropinski AM; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
  • Krupovic M; Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada.
  • Kuhn JH; Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, Paris, France.
  • Lavigne R; Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, Maryland, USA.
  • Brister JR; KU Leuven, Laboratory of Gene Technology, Heverlee, Belgium.
  • Varsani A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
  • Amid C; Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, Arizona, USA.
  • Aziz RK; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town, South Africa.
  • Bordenstein SR; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.
  • Bork P; Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt.
  • Breitbart M; Departments of Biological Sciences and Pathology, Microbiology, and Immunology, Vanderbilt Institute for Infection, Immunology and Inflammation, Vanderbilt Genetics Institute, Vanderbilt University, Nashville, Tennessee, USA.
  • Cochrane GR; European Molecular Biology Laboratory, Heidelberg, Germany.
  • Daly RA; College of Marine Science, University of South Florida, Saint Petersburg, Florida, USA.
  • Desnues C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.
  • Duhaime MB; Soil and Crop Sciences Department, Colorado State University, Fort Collins, Colorado, USA.
  • Emerson JB; Aix-Marseille Université, CNRS, MEPHI, IHU Méditerranée Infection, Marseille, France.
  • Enault F; Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, USA.
  • Fuhrman JA; University of California, Davis, Department of Plant Pathology, Davis, California, USA.
  • Hingamp P; LMGE,UMR 6023 CNRS, Université Clermont Auvergne, Aubiére, France.
  • Hugenholtz P; University of Southern California, Los Angeles, Los Angeles, California, USA.
  • Hurwitz BL; Aix Marseille Université, Université de Toulon, CNRS, IRD, MIO UM 110, Marseille, France.
  • Ivanova NN; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Queensland, Australia.
  • Labonté JM; Department of Agricultural and Biosystems Engineering, University of Arizona, Tucson, Arizona, USA.
  • Lee KB; BIO5 Research Institute, University of Arizona, Tucson, Arizona, USA.
  • Malmstrom RR; US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
  • Martinez-Garcia M; Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, USA.
  • Mizrachi IK; DDBJ Center, National Institute of Genetics, Mishima, Shizuoka, Japan.
  • Ogata H; US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
  • Páez-Espino D; Department of Physiology, Genetics and Microbiology, University of Alicante, Alicante, Spain.
  • Petit MA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
  • Putonti C; Institute for Chemical Research, Kyoto University, Uji, Japan.
  • Rattei T; US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
  • Reyes A; Micalis Institute, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.
  • Rodriguez-Valera F; Department of Biology, Loyola University Chicago, Chicago, Illinois, USA.
  • Rosario K; Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.
  • Schriml L; Department of Computer Science, Loyola University Chicago, Chicago, Illinois, USA.
  • Schulz F; Division of Computational Systems Biology, Department of Microbiology and Ecosystem Science, Research Network "Chemistry Meets Microbiology," University of Vienna, Vienna, Austria.
  • Steward GF; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
  • Sullivan MB; Evolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández, Alicante, Spain.
  • Sunagawa S; College of Marine Science, University of South Florida, Saint Petersburg, Florida, USA.
  • Suttle CA; University of Maryland School of Medicine, Baltimore, Maryland, USA.
  • Temperton B; US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
  • Tringe SG; Center for Microbial Oceanography: Research and Education, Department of Oceanography, University of Hawai'i at Manoa, Honolulu, Hawai'i, USA.
  • Thurber RV; Department of Microbiology, The Ohio State University, Columbus, Ohio, USA.
  • Webster NS; Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, Ohio, USA.
  • Whiteson KL; ETH Zurich, Department of Biology, Zurich, Switzerland.
Nat Biotechnol ; 37(1): 29-37, 2019 01.
Article em En | MEDLINE | ID: mdl-30556814
ABSTRACT
We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Cultura de Vírus / Vírus / Genoma Viral / Genômica Idioma: En Revista: Nat Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
Imprimir
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PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Cultura de Vírus / Vírus / Genoma Viral / Genômica Idioma: En Revista: Nat Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Estados Unidos