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1.
Nat Genet ; 11(1): 87-9, 1995 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-7550321

RESUMO

The chondrodysplasias are a heterogeneous group of disorders characterized by abnormal growth or development of cartilage. Current classification is based on mode of inheritance as well as clinical, histologic, and/or radiographic features. A clinical spectrum of chondrodysplasia phenotypes, ranging from mild to perinatal lethal, is due to defects in the gene for type II collagen, COL2A1. This spectrum includes Stickler syndrome, Kniest dysplasia, spondyloepiphyseal dysplasia congenita (SEDC), achondrogenesis type II, and hypochondrogenesis. Individuals affected with these disorders exhibit abnormalities of the growth plate, nucleus pulposus, and vitreous humor, which are tissues that contain type II collagen. The Strudwick type of spondyloepimetaphyseal dysplasia (SEMD) is characterized by disproportionate short stature, pectus carinatum, and scoliosis, as well as dappled metaphyses (which are not seen in SEDC). The phenotype was first described by Murdoch and Walker in 1969, and a series of 14 patients was later reported by Anderson et al. The observation of two affected sibs born to unaffected parents led to the classification of SEMD Strudwick as an autosomal recessive disorder. We now describe the biochemical characterization of defects in alpha 1(II) collagen in three unrelated individuals with SEMD Strudwick, each of which is due to heterozygosity for a unique mutation in COL2A1. Our data support the hypothesis that some cases, if not all cases, of this distinctive chondrodysplasia result from dominant mutations in COL2A1, thus expanding the clinical spectrum of phenotypes associated with this gene.


Assuntos
Colágeno/genética , Genes Dominantes , Osteocondrodisplasias/genética , Adulto , Sequência de Bases , Criança , Colágeno/classificação , Cisteína , Análise Mutacional de DNA , DNA Complementar/genética , Feminino , Glicina , Humanos , Recém-Nascido , Masculino , Dados de Sequência Molecular , Osteocondrodisplasias/classificação , Linhagem , Fenótipo , Mutação Puntual
2.
J Appl Stat ; 49(2): 291-316, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35707218

RESUMO

We propose a method for detecting a Guttman effect in a complete disjunctive table U with Q questions. Since such an investigation is a nonsense when the Q variables are independent, we reuse a previous unpublished work about the chi-squared independence test for Burt's tables. Then, we introduce a two-steps method consisting in plugging the first singular vector from a preliminary Correspondence Analysis (CA) of U as a score x into a subsequent singly-ordered Ordinal Correspondence Analysis (OCA) of U . OCA mainly consists in completing x by a sequence of orthogonal polynomials superseding the classical factors of CA. As a consequence, in presence of a pure Guttman effect, we should in principle have that the second singular vector coincide with the polynomial of degree 2, etc. The hybrid decomposition of the Pearson chi-squared statistics (resulting from OCA) used in association with permutation tests makes possible to reveal such relationships, i.e. the presence of a Guttman effect in the structure of U , and to determine its degree - with an accuracy depending on the signal to noise ratio. The proposed method is successively tested on artificial data (more or less noisy), a well-known benchmark, and synchrotron X-ray diffraction data of soil samples.

5.
Clin Chem ; 27(3): 451-4, 1981 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-6162588

RESUMO

Pancreatic and salivary isoenzymes of amylase were determined in serum from 70 subjects. Thin-layer gel/isoelectric focusing was used to separate the isoenzymes. Because other studies (J. Lab. Clin. Med. 90: 141-151, 1977) show that the major isoamylases have isoelectric points between 5.8 and 7.2, we focused the sera on polyacrylamide gel plates with a pH gradient from 5.5 to 8.5. The separated amylase fractions were made visible by direct incubation with a commercially available dye-starch polymer. Isoelectric focusing proved to be convenient, precise, and reproducible, and it can be used as a routine analysis to detect even slight changes in serum amylase distributions. We found that the isoamylase distribution is age dependent, whereas total amylase activity shows no correlation with age.


Assuntos
Amilases/sangue , Isoenzimas/sangue , alfa-Amilases/sangue , Doença Aguda , Adolescente , Adulto , Fatores Etários , Idoso , Criança , Pré-Escolar , Cromatografia em Camada Fina , Eletroforese em Gel de Poliacrilamida , Humanos , Concentração de Íons de Hidrogênio , Lactente , Focalização Isoelétrica , Pessoa de Meia-Idade , Suco Pancreático/enzimologia , Pancreatite/enzimologia , Parotidite/enzimologia , Saliva/enzimologia
6.
Am J Hum Genet ; 55(6): 1128-36, 1994 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-7977371

RESUMO

Kniest dysplasia is a heritable chondrodysplasia that severely affects skeletal growth. Recent evidence suggests that the etiology is based on mutations in COL2A1, the gene for collagen type II. We report the detection and partial characterization of an identical defect in type II collagen in two unrelated patients with Kniest dysplasia. Analysis of cyanogen bromide (CB)-digested cartilage samples from both probands by SDS-PAGE revealed an abnormal band for peptide alpha 1(II)CB12. The peptide was purified and digested with endoproteinase Asp-N. Fragments unique to the Kniest tissues were identified by reverse-phase high-pressure liquid chromatography and by sequence analysis. The results established a deletion of amino acids 102-108 of the alpha 1(II) triple-helical domain, which disrupted the (gly-X-Y)n repeat needed for helix formation. This was confirmed by sequence analysis of DNA amplified from both probands, revealing the molecular basis to be a single nucleotide mutation at a CpG dinucleotide (GCG-->GTG) in the codon for alanine 102. The mutation created a new splice donor site, which would account for the absence of the last seven amino acids from the 3' end of exon 12 in alpha 1(II)CB12. Light and electron micrographs of the probands' cartilage showed the perilacunar foamy matrix ("Swiss cheese") characteristic of Kniest dysplasia and chondrocytes containing dilated rough endoplasmic reticulum, which earlier studies had shown were filled with type II procollagen. These two cases strengthen the concept that Kniest dysplasia is based on mutations of COL2A1 and belongs within the broad spectrum of chondrodysplasias caused by type II collagenopathies.


Assuntos
Cartilagem/química , Colágeno/genética , Osteocondrodisplasias/genética , Adulto , Sequência de Aminoácidos , Sequência de Bases , Osso e Ossos/diagnóstico por imagem , Osso e Ossos/patologia , Cartilagem/anatomia & histologia , Criança , Colágeno/química , Éxons/genética , Feminino , Genoma Humano , Heterozigoto , Humanos , Modelos Moleculares , Dados de Sequência Molecular , Polimorfismo de Fragmento de Restrição , Splicing de RNA/genética , Radiografia
7.
Hum Mol Genet ; 3(11): 1999-2003, 1994 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-7874117

RESUMO

Kniest dysplasia is a moderately severe chondrodysplasia phenotype that results from mutations in the gene for type II collagen, COL2A1. Characteristics of the disorder include a short trunk and extremities, mid-face hypoplasia, cleft palate, myopia, retinal detachment, and hearing loss. Recently, deletions of all or part of exon 12 have been identified in individuals with Kniest dysplasia, suggesting that mutations within this region of the protein may primarily result in the Kniest dysplasia phenotype. We used SSCP to analyze an amplified genomic DNA fragment containing exon 12 from seven individuals with Kniest dysplasia. An abnormality was identified in one patient. DNA sequence analysis demonstrated that the patient was heterozygous for a G to A transition that implied substitution of glycine103 of the triple helical domain by aspartate. The mutation was not observed in DNA from either of the clinically unaffected parents of the proband. Protein microsequencing demonstrated expression of the abnormal allele in cartilage. These data demonstrate that point mutations which result in single amino acid substitutions can produce Kniest dysplasia and further support the hypothesis that alteration of a domain, which includes the region encoded by exon 12, in the type II collagen protein leads to this disorder.


Assuntos
Colágeno/genética , Osteocondrodisplasias/genética , Sequência de Aminoácidos , Sequência de Bases , Pré-Escolar , Éxons , Feminino , Humanos , Dados de Sequência Molecular , Fenótipo , Mutação Puntual , Polimorfismo de Fragmento de Restrição , Polimorfismo Conformacional de Fita Simples , Conformação Proteica
8.
J Biol Chem ; 267(31): 22522-6, 1992 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-1429602

RESUMO

The spondyloepiphyseal dysplasia subclassification of bone dysplasias includes achondrogenesis, hypochondrogenesis, and spondyloepiphyseal dysplasia congenita. The phenotypic expression of these disorders ranges from mild to perinatal lethal forms. We report the detection and partial characterization of a defect in type II collagen in a perinatal lethal form of hypochondrogenesis. Electrophoresis in sodium dodecyl sulfate-polyacrylamide of CB peptides (where CB represents cyanogen bromide) from type II collagen of the diseased cartilage showed a doublet band for peptide alpha 1(II)CB10 and evidence for post-translational overmodification of the major peptides (CB8, CB10, and CB11) seen as a retarded electrophoretic mobility. Peptide CB10 was digested by endoproteinase Asp-N; and on reverse-phase high pressure liquid chromatography, fragments of abnormal mobility were noted. Sequence analysis of a unique peptide D12 revealed a single amino acid substitution (Gly-->Glu) at position 853 of the triple helical domain. This was confirmed by sequence analysis of amplified COL2A1 cDNA, which revealed a single nucleotide substitution (GGA-->GAA) in 5 of 10 clones. Electron micrographs of the diseased cartilage showed a sparse extracellular matrix and chondrocytes containing dilated rough endoplasmic reticulum, which suggested impaired assembly and secretion of the mutant protein. This case further documents the molecular basis of the spondyloepiphyseal dysplasia spectrum of chondrodysplasias as mutations in COL2A1.


Assuntos
Doenças do Desenvolvimento Ósseo/genética , Colágeno/genética , Sequência de Aminoácidos , Sequência de Bases , Cartilagem/anormalidades , Glutamatos/química , Glicina/química , Humanos , Dados de Sequência Molecular , Oligodesoxirribonucleotídeos/química , Fragmentos de Peptídeos/análise , Mutação Puntual , Relação Estrutura-Atividade
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