Phylogenomics Uncovers Evolutionary Trajectory of Nitrogen Fixation in Cyanobacteria.

Biological nitrogen fixation (BNF) by cyanobacteria is of significant importance for the Earth's biogeochemical nitrogen cycle but is restricted to a few genera that do not form monophyletic group. To explore the evolutionary trajectory of BNF and investigate the driving forces of its evolution, we analyze 650 cyanobacterial genomes and compile the database of diazotrophic cyanobacteria based on the presence of nitrogen fixation gene clusters (NFGCs). We report that 266 of 650 examined genomes are NFGC-carrying members, and these potentially diazotrophic cyanobacteria are unevenly distributed across the phylogeny of Cyanobacteria, that multiple independent losses shaped the scattered distribution. Among the diazotrophic cyanobacteria, two types of NFGC exist, with one being ancestral and abundant, which have descended from diazotrophic ancestors, and the other being anaerobe-like and sparse, possibly being acquired from anaerobic microbes through horizontal gene transfer. Interestingly, we illustrate that the origin of BNF in Cyanobacteria coincide with two major evolutionary events. One is the origin of multicellularity of cyanobacteria, and the other is concurrent genetic innovations with massive gene gains and expansions, implicating their key roles in triggering the evolutionary transition from nondiazotrophic to diazotrophic cyanobacteria. Additionally, we reveal that genes involved in accelerating respiratory electron transport (coxABC), anoxygenic photosynthetic electron transport (sqr), as well as anaerobic metabolisms (pfor, hemN, nrdG, adhE) are enriched in diazotrophic cyanobacteria, representing adaptive genetic signatures that underpin the diazotrophic lifestyle. Collectively, our study suggests that multicellularity, together with concurrent genetic adaptations contribute to the evolution of diazotrophic cyanobacteria.

Microbial Communities Are Shaped by Different Ecological Processes in Subtropical Reservoirs of Different Trophic States.

Understanding microbial community structure and the underlying control mechanisms are fundamental purposes of aquatic ecology. However, little is known about the seasonality and how trophic conditions regulate plankton community in subtropical reservoirs. In this study, we study the prokaryotic and picoeukaryotic communities and their interactions during wet and dry seasons in two subtropical reservoirs: one at oligotrophic state and another at mesotrophic state. Distinct microbial community compositions (prokaryotes and picoeukaryotes) and seasonal variation pattern were detected in the oligotrophic and mesotrophic reservoirs. The interactions between prokaryotic and picoeukaryotic communities were more prevalent in the oligotrophic reservoir, suggesting enhanced top-down control of small eukaryotic grazers on the prokaryotic communities. On the other hand, the microbial community in the mesotrophic reservoir was more influenced by physico-chemical parameters and showed a stronger seasonal variation, which may be the result of distinct nutrient levels in wet and dry seasons, indicating the importance of bottom-up control. Our study contributes to new understandings of the environmental and biological processes that shape the structure and dynamics of the planktonic microbial communities in reservoirs of different trophic states.

Combination of linear and nonlinear multivariate approaches effectively uncover responses of phytoplankton communities to environmental changes at regional scale.

The response of a community to environmental changes is either linear or non-linear, so that they can be investigated approximately by linear or nonlinear models. At community level, redundancy analysis (RDA) and canonical correspondence analysis (CCA), and Mantel test and Generalized Dissimilarity Modelling (GDM) are two pairs of fundamental multivariate approaches. Thus, it is necessary to determine how they are used for a given group of communities or a metacommunity. In the present study, we explored the applications of the two pairs of commonly used multivariate methods for the analysis of tropical phytoplankton communities. Phytoplankton were collected from 60 tropical reservoirs in southern China at two distinct regions and two hydrological seasons. Because of a short environmental gradient, response of phytoplankton communities to the environmental gradients was first explored with linear models: distance-based redundancy analysis (db-RDA) and Mantel test. Then, CCA and GDM were further applied to recognize the nonlinear relationship between phytoplankton community variation and environmental changes, and to detect the significant environmental and/or spatial variables. Our results strongly suggest that the combination of db-RDA and GDM provides a highly effective tool to uncover the linearity and nonlinearity in community responses and the important associated environmental and spatial variables, which were significantly different between flooding and dry seasons.

Mitogenomics of Cladocera (Branchiopoda): Marked gene order rearrangements and independent predation roots.

Cladocera (Crustacea: Branchiopoda) is a key group of invertebrates. Despite a long history of phylogenetic research, relationships within this group remain disputed. We here provide new insights based on 15 new mitochondrial genomes obtained from high-throughput sequencing (HTS) and 40 mitogenomes extracted from published HTS datasets. Together with 25 mitogenomes from GenBank, we generated a matrix of 80 mitogenomes, 44 of them belonging to Cladocera. We also obtained a matrix with 168 nuclear orthologous genes to further assess the phylogenetic result from mitogenomes based on published data and one new HTS data ofLeptodora. Maximum likelihood and Bayesian phylogenetic analyses recovered all Branchiopoda orders as monophyletic and supported a sister-group relationship between Anomopoda and Onychopoda, making the taxon Gymnomera paraphyletic and supporting an independent origin of predatory Haplopoda and Onychopoda. The nuclear phylogeny and topological tests also support Gymnomera as paraphyletic, and the nuclear phylogeny strongly supports a sister-group relationship between Ctenopoda and Haplopoda. We provide a fossil-calibrated time tree, congruent with a Carboniferous origin for Cladocera and a subsequent diversification of the crown group of Anomopoda, Onychopoda, and Ctenopoda, at least in the Triassic. Despite their long evolutionary history, non-Cladoceran Branchiopoda exhibited high mitogenome structural stability. On the other hand, 21 out of 24 gene rearrangements occurred within the relatively younger Cladocera. We found the differential base compositional skewness patterns between Daphnia s.s. and Ctenodaphnia, which might be related to the divergence between these taxa. We also provide evidence to support the recent finding that Spinicaudata possesses mitogenomes with inversed compositional skewness without gene rearrangement. Such a pattern has only been reported in Spinicaudata.

Interactive effect of water level and flushing rate on population dynamics of a harmful cyanobacterial species: Raphidiopsis raciborskii.

Changes in water level and flushing rate directly affect to a large extent the biomass of harmful cyanobacteria, and drive the shift of phytoplankton composition between cyanobacteria dominance/non-dominance in eutrophic waters. Here, we gave a theoretical formula describing the combinational effect of water level and flushing rate on cyanobacterial biomass in eutrophic and well-mixed waters. We also formulated an equation predicting the water level and flushing rate at which cyanobacteria become non-dominating in such water columns. The formulae were confronted with field observations of a low-light adapted cyanobacterium in a large coastal reservoir of southern China. Our formulae demonstrate that water level and flushing rate have an interactive effect on the equilibrium biomass of low-light adapted cyanobacteria in mixed and turbid waters. The formulae were well fitted to the field observation of Raphidiopsis raciborskii population in the reservoir during four dry seasons. In agreement with the theoretical analysis, multiple regression analysis also showed that the interaction between water level and flushing rate is able to interpret the variation of R. raciborskii biomass in the water column. The two formulae are applicable for predicting the response of low-light adapted cyanobacteria to local climate change. Our findings have practical significance in designing measures against the dominance of low light-adapted cyanobacteria in reservoirs.

Life-history responses of Daphnia sinensis simultaneously exposed to Microcystis aeruginosa and Cylindrospermopsis raciborskii.

Many cyanobacterial species co-occur commonly in a freshwater ecosystem and can be consumed simultaneously by zooplankton. Both Microcystis aeruginosa and Cylindrospermopsis raciborskii are the dominant species and coexist in eutrophic tropical waters, and they together are assumed to have exert a stronger effect on the life history traits of cladocerans than a single cyanobacterial species. In the present study, we tested the hypothesis with life-history experiments of Daphnia sienesis, a large cladoceran species in tropics. In the experiments, M. aeruginosa and C. raciborskii were used as a mixture of food with Chlorella pyrenoidosa for the experimental animals. D. sienesis showed excellent growth and survival on sole diets of C. pyrenoidosa (CP). By contrast, Daphnia's growth decreased significantly and reproduction was completely inhibited when cyanobacteria comprised 100% of the food offered. The supplementation of C. pyrenoidosa into cyanobacterial diets significantly decreased their harmful effects on Daphnia, who improved the life history traits with the reduction of cyanobacterial percentage in mixed foods, irrespective of cyanobacterial species. Compared with the cultures of D. sienesis fed with a single cyanobacteria species, the animals in the treatments fed both M.aeruginosa-FACHB469 (F469) and C. raciborskii N8 (N8) had a lower growth rate in all the proportion of C. pyrenoidosa (25% CP, 50% CP or 75% CP). The strongest synergistic inhibition by the two cyanobacterial strains was found in the treatments with the 25% CP (i.e., 25% CP + 37.5% F469 + 37.5% N8), and no animal survived to maturity and reproduced. Thus, the simultaneous exposure to the two cyanobacterial species should be taken into account in assessing the ecological risks of cyanobacterial blooms, since multiple cyanobacterial coexistence can result in strong synergistic inhibition on growth and reproduction of zooplankton.

Species diversity and seasonal dynamics of filamentous cyanobacteria in urban reservoirs for drinking water supply in tropical China.

Filamentous cyanobacteria have been observed to become the dominant species in reservoirs, especially in small reservoirs for drinking water supply in southern China. The occurrences of filamentous cyanobacteria blooms in such reservoirs add additional costs for water plants by decreasing the filtration efficiency and the potential of toxin production. To serve the purpose of drinking water supply, the effective risk assessment requires the dynamic pattern of filamentous cyanobacteria. This study seasonally collected samples from 25 reservoirs in Dongguan, one of the most important 'world factories' in China in July, December and March, and investigated the temporal dynamics of phytoplankton, particularly cyanobacteria community. Our investigation showed that filamentous cyanobacteria, Planktothrix sp, Limnothrix sp. and Cylindrospermopsis raciborskii dominated in these reservoirs and climate-related water temperature was the primary factor for the seasonal shift of filamentous cyanobacteria. High abundance of filamentous cyanobacteria occurred in the high water level period with increasing temperature but less relevant with nutrient conditions. Our study observed the seasonal dynamics of filamentous cyanobacteria in tropical urban reservoirs and highlighted the association between temperature and filamentous cyanobacteria. our data and analysis provided an evidence that increased temperature could increase the likelihood of frequency and intensity of filamentous cyanobacteria blooms. In the scenario of global warming, more frequent monitoring of filamentous cyanobacteria and the potential to produce toxin should be considered for water quality and reservoir management.

Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera).

Cladocerans are well-studied planktonic crustaceans, especially those of the genus Daphnia in which interesting evolutionary questions have been addressed on speciation processes. The aim of the present study is to demonstrate that other genera of cladocerans show similar levels of cryptic diversity, intraspecific gene flow, and thus become useful model systems for comparison. In order to do so, we chose the genus Diaphanosoma, widespread in tropical and temperate areas. We started with a survey of species diversity in the genus Diaphanosoma in Asia using a morphological approach, then obtained sequences from a mitochondrial and a nuclear marker from multiple individuals of different species, performed tests on DNA taxonomy and molecular phylogenies, and assessed the role of hybridization in explaining the cases of mitonuclear discordance. The results are that cryptic diversity occurs in Diaphanosoma, and mitonuclear discordance was found in about 6% of the sequenced animals. Past hybridization is supported as the most likely explanation for the discordance: no evidence was found of first generation hybrids with heterozygous sequences. Our analysis on patterns of genetic diversity in Diaphanosoma supports similarities and differences with what is known in Daphnia.

Competition between toxic and non-toxic Microcystis aeruginosa and its ecological implication.

The frequency of toxic cyanobacterial blooms has increased in recent decades, but the factors that regulate the dominance of toxin-producing cyanobacteria over non-toxin-producing strains of one species are still obscure. This study examined the effects of temperature, light intensity, nitrate and phosphate on the dominance of MC-producing and non-MC-producing strains of Microcystis aeruginosa in monoculture and co-culture experiments. In the monoculture experiments, growth rates of the non-MC-producing strain were higher than those of the MC-producing strain under the same growth conditions. However, at the end of the co-culture experiments, the MC-producing strain became surprisingly dominant in all treatments except when treated with extreme low phosphate concentrations. Higher temperatures and nutrient levels can shift the dominance more quickly towards the toxic strain. The dominance may be explained by allelopathic interactions through allelochemicals and other secondary metabolites, but not MC. Environmental factors such as extremely low phosphate content may exert an indirect effect on strain dominance by changing the production of allelochemicals. Our findings highlight the complications in predicting competitive outcome for cyanobacterial strains in natural environments.

Occurrence and dominance of Cylindrospermopsis raciborskii and dissolved cylindrospermopsin in urban reservoirs used for drinking water supply, South China.

The tropical cyanobacterium Cylindrospermopsis raciborskii is of particular concern for its invasive characteristics and production of the toxin cylindrospermopsin (CYN). The present study represents the first attempt to determine the distribution of C. raciborskii and CYN in tropical China. The presence of C. raciborskii and CYN, as well as the composition of phytoplankton, was determined from a total of 86 samples from 25 urban reservoirs for drinking water supply in Dongguan City of South China. The presence of C. raciborskii was observed in 21 of the 25 reservoirs and confirmed that this species has been widely distributed in the investigated reservoirs. C. raciborskii accounted for between 0.1 and 90.3 % of the total phytoplankton biomass and contributed to the majority of the phytoplankton in some reservoirs such as Tangkengbian and Xiagongyan. Its biomass was negatively correlated with NO3 (-)-N concentration and Secchi depth. Dissolved CYN was detected in more than one-half of the reservoirs with concentrations up to 8.25 µg L(-1), and it positively correlated with C. raciborskii biomass. Dissolved microcystins (MCs) were detected in 12 of the 25 reservoirs with a maximum concentration 1.99 µg L(-1). Our data strongly suggest that C. raciborskii and CYN could be important health hazards in urban reservoirs of South China and that more data are needed for further assessment.

The complete mitochondrial genome of Chlorogomphus shanicus Wilson, 2002 (Anisoptera: Chlorogomphidae), an endemic species in South China.

In this study, the complete mitochondrial genome of Chlorogomphus shanicus Wilson, 2002 was reported, and the maximum-likelihood (ML) phylogenetic tree was constructed using 13 protein-coding genes (PCGs). The total length of the mitogenome of C. shanicus was 15,497 bp. Twelve PCGs started with ATN codons, except cox1 began with TTG codon. Most transfer RNA genes (tRNAs) were predicted to fold in a typical cloverleaf structure, except the trnS1 (gct), which lacked a dihydrouridine arm that had been simplified to a loop. The phylogenetic tree showed that Anisoptera was split into two clades, and revealed that C. shanicus was closely related to Cordulegaster boltonii (Donovan, 1807) which is endemic to Europe.

Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China.

Cladoceran (Crustacea: Branchiopoda) fauna of Hunan and Hubei provinces of China was studied in April 2014 and October 2018. 49 species of Cladocera were found, Anthalona sanoamuangae Sinev & Kotov, 2012 was recorded for China for the first time. Eight species were newly recorded for central China, taxonomic status of four species was clarified. Among the observed species, 19 taxa are predominantly Boreal, 13 species are recorded predominantly in south part of temperate zone and subtropics, and 17 species are mainly tropical. Significant difference was revealed between the spring and autumn fauna: Boreal species were the most frequent in spring, whereas subtropical and tropical species became more common in autumn. Species diversity and composition of the cladoceran fauna in the center of East Asia plain is discussed.

High-quality genome of Diaphanosoma dubium provides insights into molecular basis of its broad ecological adaptation.

Diaphanosoma dubium Manuilova, 1964, is a widespread planktonic water flea in Asian freshwater. Although sharing similar ecological roles with species of Daphnia, studies on D. dubium and its congeners are still few and lacking a genome for the further studies. Here, we assembled a high quality and chromosome level genome of D. dubium by combining long reads sequencing and Hi-C technologies. The total length of assembled genome was 101.8 Mb, with 98.92 Mb (97.2%) anchored into 22 chromosomes. Through comparative genomic analysis, we found the genes, involved in anti-ROS, detoxification, protein digestion, germ cells regulation and protection, underwent expansion in D. dubium. These genes and their expansion helpfully explain its widespread geographical distribution and dominance in eutrophic waters. This study provides insight into the adaptive evolution of D. dubium at genomic perspectives, and the present high quality genomic resource will be a footstone for future omics studies of the species and its congeners.

Geography, ecology, and history synergistically shape across-range genetic variation in a calanoid copepod endemic to the north-eastern Oriental.

The center-periphery hypothesis (CPH) predicts that peripheral populations will have lower genetic variation than those at the center of a species' distribution. However, ecological margins do not always coincide with geographical edges when topographies are diverse. Historical climate changes can also strongly affect genetic variation. Here, we examined genetic variation in Phyllodiaptomus tunguidus, a calanoid copepod endemic to the north-eastern Oriental. This species was predicted to exhibit a complex pattern of genetic variation across its range due to the diverse topographies and stable climate history of the north-eastern Oriental. To test this, we used geographic distance to the center of the distribution, current ecological suitability, and climate during the last glacial maximum as geographical, ecological, and historical factors, respectively, in our analyses. We measured genetic diversity and population differentiation using mitochondrial and nuclear markers. This showed that P. tunguidus had 3 refugia during the last glacial maximum (LGM). Such a pattern of multiple refugia complicates the determination of the center and periphery of spatial genetic diversity. Both regression models and redundancy analyses failed to support the CPH. Instead, they showed that geographical, ecological, and historical factors together shaped population genetic structure in this species. Ecological factors explained significantly more genetic variation than did geographical and historical factors-however, all three factors interacted significantly to affect the pattern of genetic variation. The results extend our understanding of the CPH and the extent to which it can explain genetic variation across populations.

Biogeographical and Biodiversity Patterns of Marine Planktonic Bacteria Spanning from the South China Sea across the Gulf of Bengal to the Northern Arabian Sea.

Understanding the biogeographical and biodiversity patterns of bacterial communities is essential in unraveling their responses to future environmental changes. However, the relationships between marine planktonic bacterial biodiversity and seawater chlorophyll a are largely understudied. Here, we used high-throughput sequencing to study the biodiversity patterns of marine planktonic bacteria across a broad chlorophyll a gradient spanning from the South China Sea across the Gulf of Bengal to the northern Arabian Sea. We found that the biogeographical patterns of marine planktonic bacteria complied with the scenario of homogeneous selection, with chlorophyll a concentration being the key environmental selecting variable of bacteria taxa. The relative abundance of Prochlorococcus, the SAR11 clade, the SAR116 clade, and the SAR86 clade significantly decreased in habitats with high chlorophyll a concentrations (>0.5 µg/L). Free-living bacteria (FLB) and particle-associated bacteria (PAB) displayed contrasting alpha diversity and chlorophyll a relationships with a positive linear correlation for FLB but a negative correlation for PAB. We further found that PAB had a narrower niche breadth of chlorophyll a than did FLB, with far fewer bacterial taxa being favored at higher chlorophyll a concentrations. Higher chlorophyll a concentrations were linked to the enhanced stochastic drift and reduced beta diversity of PAB but to the weakened homogeneous selection, enhanced dispersal limitation, and increased beta diversity of FLB. Taken together, our findings might broaden our knowledge about the biogeography of marine planktonic bacteria and advance the understanding of bacterial roles in predicting ecosystem functioning under future environmental changes that are derived from eutrophication. IMPORTANCE One of the long-standing interests of biogeography is to explore diversity patterns and uncover their underlying mechanisms. Despite intensive studies on the responses of eukaryotic communities to chlorophyll a concentrations, we know little about how changes in seawater chlorophyll a concentrations affect free-living bacteria (FLB) and particle-associated bacteria (PAB) diversity patterns in natural systems. Our biogeography study demonstrated that marine FLB and PAB displayed contrasting diversity and chlorophyll a relationships and exhibited completely different assembly mechanisms. Our findings broaden our knowledge about the biogeographical and biodiversity patterns of marine planktonic bacteria in nature systems and suggest that PAB and FLB should be considered independently in predicting marine ecosystem functioning under future frequent eutrophication.

The facilitating role of phycospheric heterotrophic bacteria in cyanobacterial phosphonate availability and Microcystis bloom maintenance.

BACKGROUND: Phosphonates are the main components in the global phosphorus redox cycle. Little is known about phosphonate metabolism in freshwater ecosystems, although rapid consumption of phosphonates has been observed frequently. Cyanobacteria are often the dominant primary producers in freshwaters; yet, only a few strains of cyanobacteria encode phosphonate-degrading (C-P lyase) gene clusters. The phycosphere is defined as the microenvironment in which extensive phytoplankton and heterotrophic bacteria interactions occur. It has been demonstrated that phytoplankton may recruit phycospheric bacteria based on their own needs. Therefore, the establishment of a phycospheric community rich in phosphonate-degrading-bacteria likely facilitates cyanobacterial proliferation, especially in waters with scarce phosphorus. We characterized the distribution of heterotrophic phosphonate-degrading bacteria in field Microcystis bloom samples and in laboratory cyanobacteria "phycospheres" by qPCR and metagenomic analyses. The role of phosphonate-degrading phycospheric bacteria in cyanobacterial proliferation was determined through coculturing of heterotrophic bacteria with an axenic Microcystis aeruginosa strain and by metatranscriptomic analysis using field Microcystis aggregate samples. RESULTS: Abundant bacteria that carry C-P lyase clusters were identified in plankton samples from freshwater Lakes Dianchi and Taihu during Microcystis bloom periods. Metagenomic analysis of 162 non-axenic laboratory strains of cyanobacteria (consortia cultures containing heterotrophic bacteria) showed that 20% (128/647) of high-quality bins from eighty of these consortia encode intact C-P lyase clusters, with an abundance ranging up to nearly 13%. Phycospheric bacterial phosphonate catabolism genes were expressed continually across bloom seasons, as demonstrated through metatranscriptomic analysis using sixteen field Microcystis aggregate samples. Coculturing experiments revealed that although Microcystis cultures did not catabolize methylphosphonate when axenic, they demonstrated sustained growth when cocultured with phosphonate-utilizing phycospheric bacteria in medium containing methylphosphonate as the sole source of phosphorus. CONCLUSIONS: The recruitment of heterotrophic phosphonate-degrading phycospheric bacteria by cyanobacteria is a hedge against phosphorus scarcity by facilitating phosphonate availability. Cyanobacterial consortia are likely primary contributors to aquatic phosphonate mineralization, thereby facilitating sustained cyanobacterial growth, and even bloom maintenance, in phosphate-deficient waters. Video Abstract.

Survivals of D. galeata in sub-tropical reservoirs: harmful effects of toxic cyanobacteria in food source.

In the present study, we tested the hypothesis that massive occurrence of cyanobacteria as food source is one of the factors limiting the distribution of the zooplankton Daphnia galeata in the warm water reservoirs of South China. D. galeata was fed with Chlorella pyrenoidosa, 4 strains of cyanobacteria (three strains of Microcystis aeruginosa: MC1, MC2 and MC3, and one strain of Pseudoanabaena sp. :PA), a mixture of C. pyrenoidosa and cyanobacterial strains, and natural particles from the reservoir where the animal was initially collected. On medium and high food levels (1 and 1.5 mg C L(-1)) of C. pyrenoidosa, D. galeata showed a typical Type III of survivorship, and had a high intrinsic rate of population increase (0.37-0.41). On low food levels, the intrinsic rate of population increase declined but lifespan largely increased (84 days). When feeding with natural particles, the intrinsic rate of increase was evidently reduced (0.19), but the maximal body length (2 mm) was much longer than that of individuals observed in the fields implying that D. galeata was strongly preyed upon by size-selective predators. Applying a mixture of Chlorella and cyanobacteria, the strain and proportion of cyanobacteria significantly affected life history variables of the animal and its somatic growth. On the sole diet of each stain of cyanobacteria, D. galeata failed to reproduce. Microcystin and colonial morphology of Microcystis strains reduced clutch size and somatic growth rate. In comparison, the less negative effect of the strain MC3 indicates that the morphology was critical for actual ingestion of toxic cyanobacteria by the zooplanktons. Pseudoanabaena sp. had a short filament (15 µm), can be easily used as a food by D. galeata. Composition of phytoplankton community plays a significant role in survival and population sizes of D. galeata and massive occurrence of cyanobacterial blooms limits the distribution of D. galeata in the reservoirs of South China.

Modeling and Prediction of the Species' Range of Neurobasis chinensis (Linnaeus, 1758) under Climate Change.

Neurobasis chinensis is widely distributed in eastern tropical Asia. Its only congener in China, the N. anderssoni, has not been observed for decades. To protect N. chinensis, it is necessary to understand the ecological properties of its habitats and specie's range shift under climate change. In the present study, we modeled its potential distribution under one historical, current, and four future scenarios. We evaluated the importance of the factors that shape its distribution and habitats and predicted the historical and current core spatial distributions and their shifting in the future. Two historical core distribution areas were identified: the inland region of the Bay of Bengal and south-central Vietnam. The current potential distribution includes south China, Vietnam, Laos, Thailand, Myanmar, Luzon of Philippines, Malaysia, southwest and northeast India, Sri Lanka, Indonesia (Java, Sumatera), Bangladesh, Nepal, Bhutan, and foothills of the Himalayas, in total, ca. 3.59 × 106 km2. Only one core distribution remained, concentrated in south-central Vietnam. In a warming future, the core distribution, high suitable habitats, and even the whole range of N. chinensis will expand and shift northwards. Currently, N. chinensis mainly resides in forest ecosystems below 1200 m above sea level (preferred 500 m to 1200 m a.s.l.). Annual precipitation, mean temperature of driest quarter, and seasonality of precipitation are important factors shaping the species distribution. Our study provides systematic information on habitats and geographical distribution, which is useful for the conservation of N. chinensis.

Cyanophycin accumulated under nitrogen-fluctuating and high-nitrogen conditions facilitates the persistent dominance and blooms of Raphidiopsis raciborskii in tropical waters.

Nutrient storage is considered a critical strategy for algal species to adapt to a fluctuating nutrient supply. Luxury phosphorus (P) uptake into storage of polyphosphate extends the duration of cyanobacterial dominance and their blooms under P deficiency. However, it is unclear whether nitrogen (N) storage in the form of cyanophycin supports persistent cyanobacterial dominance or blooms in the tropics where N deficiency commonly occurs in summer. In this study, we examined genes for cyanophycin synthesis and degradation in Raphidiopsis raciborskii, a widespread and dominant cyanobacterium in tropical waters; and detected the cyanophycin accumulation under fluctuating N concentrations and its ecological role in the population dynamics of the species. The genes for cyanophycin synthesis (cphA) and degradation (cphB) were highly conserved in 21 out of 23 Raphidiopsis strains. This suggested that the synthesis and degradation of cyanophycin are evolutionarily conserved to support the proliferation of R. raciborskii in N-fluctuating and/or deficient conditions. Isotope 15N-NaNO3 labeling experiments showed that R. raciborskii QDH7 always commenced to synthesize and accumulate cyanophycin under fluctuating N conditions, regardless of whether exogenous N was deficient. When the NO3--N concentration exceeded 1.2 mg L-1, R. raciborskii synthesized cyanophycin primarily through uptake of 15N-NaNO3. However, when the NO3--N concentration was below 1.0 mg L-1, cyanophycin-based N was derived from unlabeled N2, as evidenced by increased dinitrogenase activity. Cells grown under NO3--N < 1.0 mg L-1 had lower cyanophycin accumulation rates than cells grown under NO3--N > 1.2 mg L-1. Our field investigation in a large tropical reservoir underscored the association between cyanophycin content and the population dynamics of R. raciborskii. The cyanophycin content was high in N-sufficient (NO3--N > 0.45 mg L-1) periods, and decreased in N-deficient summer. In summer, R. raciborskii sustained a relatively high biomass and produced few heterocysts (< 1%). These findings indicated that cyanophycin-released N, rather than fixed N, supported persistent R. raciborskii blooms in N-deficient seasons. Our study suggests that the highly adaptive strategy in a N2-fixing cyanobacterial species makes mitigating its bloom more difficult than previously assumed.

Spatial and temporal variation of genetic diversity and genetic differentiation in Daphnia galeata populations in four large reservoirs in southern China.

Daphnia galeata is a common and dominant species in warmer waters, and has a strong top-down effect on both phytoplankton and bacteria. The knowledge of its temporal and spatial patterns of genetic diversity is fundamental in understanding its population dynamics and potential ecological function in ecosystems. Its population genetics have been investigated at regional scales but few within regions or at smaller spatial scales. Here, we examined the fine-scale spatial genetic variation of D. galeata within four large, deep reservoirs in wet and dry seasons and the six-year variation of genetic diversity in one of the reservoirs by using cytochrome c oxidase subunit I and microsatellites (simple sequence repeat). Our study shows that fine-scale spatial genetic variation commonly occurred within the reservoirs, indicating strong environmental selection at least in the two of reservoirs with strong longitudinal gradients. Since the environmental gradients established in the dry season was largely reduced in the wet season, the fine-scale spatial genetic variation was much higher in the dry season. The dynamics of local genetic diversity did not follow the theoretical pattern of rapid erosion but peaked in mid or mid-late growth season. The local genetic diversity of D. galeata appears to be shaped and maintained not only by recruitment from resting egg banks but also by gene flow within reservoirs. The temporal and fine-scale genetic variation within a water body suggests that it is necessary to pay attention to sampling periods and locations of a given water body in regional studies.