Comparative Plastid Genome and Phylogenomic Analyses of Potamogeton Species.

Potamogetonaceae are aquatic plants divided into six genera. The largest genus in the family is Potamogeton, which is morphologically diverse with many hybrids and polyploids. Potamogetonaceae plastomes were conserved in genome size (155,863 bp-156,669 bp), gene contents (113 genes in total, comprising 79 protein-coding genes and 30 tRNA and 4 rRNA genes), and GC content (36.5%). However, we detected a duplication of the trnH gene in the IR region of the Potamogeton crispus and P. maakianus plastomes. A comparative analysis of Alismatales indicated that the plastomes of Potamogetonaceae, Cymodaceae, and Ruppiaceae have experienced a 6-kb inversion of the rbcL-trnV region and the ndh complex has been lost in the Najas flexilis plastome. Five divergent hotspots (rps16-trnQ, atpF intron, rpoB-trnC, trnC-psbM, and ndhF-rpl32) were identified among the Potamogeton plastomes, which will be useful for species identification. Phylogenetic analyses showed that the family Potamogetonaceae is a well-defined with 100% bootstrap support and divided into two different clades, Potamogeton and Stuckenia. Compared to the nucleotide substitution rates among Alismatales, we found neutral selection in all plastid genes of Potamogeton species. Our results reveal the complete plastome sequences of Potamogeton species, and will be helpful for taxonomic identification, the elucidation of phylogenetic relationships, and the plastome structural analysis of aquatic plants.

Evaluation of the Impacts of Abandoned Mining Areas: A Case Study with Benthic Macroinvertebrate Assemblages.

Mining activities are among the most long-lasting anthropogenic pressures on streams and rivers. Therefore, detecting different benthic macroinvertebrate assemblages in the areas recovered from mining activities is essential to establish conservation and management plans for improving the freshwater biodiversity in streams located near mining areas. We compared the stability of benthic macroinvertebrate communities between streams affected by mining activities (Hwangjicheon: NHJ and Cheolamcheon: NCA) and the least disturbed stream (Songjeonricheon: NSJ) using network analysis, self-organizing map, and indicator species analysis. Species richness was lowest at sites where stream sediments were reddened or whitened due to mining impacts in NHJ and NCA. Among functional feeding groups, the ratio of scrapers was lower (i.e., NHJ) or not observed (i.e., NCA) in the affected sites by mining. The networks (species interactions) were less connected in NHJ and NCA than in NSJ, indicating that community stability decreased in the area affected by mining activity. We identified five groups based on the similarity of benthic macroinvertebrate communities according to the gradients of mining impacts using a self-organizing map. the samples from the reference stream (clusters 1 and 5), sites located near the mining water inflow area (cluster 4), sites where stream sediments acid-sulfated (cluster 2), and sites that had recovered from mining impacts (cluster 3). Among the 40 taxa selected as indicators defined from the five clusters in self-organizing map, only few (Physa acuta, Tipula KUa, and Nemoura KUb) indicator species were selected in each cluster representing the mining-impacted sites. Our results highlighted that the benthic macroinvertebrate community complexity was lower in streams affected by mining activity. Furthermore, the range of disturbed areas in the streams, where conservation and management plans should be prioritized, can be quantified by examining alterations in the benthic macroinvertebrate community.