The horizontal gene transfer of perchlorate reduction genomic island in three bacteria from an ecological niche.

Three new strains of dissimilatory perchlorate-reducing bacteria (DPRB), QD19-16, QD1-5, and P3-1, were isolated from an active sludge. Phylogenetic trees based on 16S rRNA genes indicated that QD19-16, QD1-5, and P3-1 belonged to Brucella, Acidovorax, and Citrobacter, respectively, expanding the distribution of DPRB in the Proteobacteria. The three strains were gram-negative and facultative anaerobes with rod-shaped cells without flagella, which were 1.0-1.6 µm long and 0.5-0.6 µm wide. The three DPRB strains utilized similar broad spectrum of electron donors and acceptors and demonstrated a similar capability to reduce perchlorate within 6 days. The enzyme activity of perchlorate reductase in QD19-16 toward chlorate was higher than that toward perchlorate. The high sequence similarity of the perchlorate reductase operon and chlorite dismutase genes in the perchlorate reduction genomic islands (PRI) of the three strains implied that they were monophyletic origin from a common ancestral PRI. Two transposase genes (tnp1 and tnp2) were found in the PRIs of strain QD19-16 and QD1-5, but were absent in the strain P3-1 PRI. The presence of fragments of IR sequences in the P3-1 PRI suggested that P3-1 PRI had previously contained these two tnp genes. Therefore, it is plausible to suggest that a common ancestral PRI transferred across the strains Brucella sp. QD19-16, Acidovorax sp. QD1-5, and Citrobacter sp. P3-1 through horizontal gene transfer, facilitated by transposases. These results provided a direct evidence of horizontal gene transfer of PRI that could jump across phylogenetically unrelated bacteria through transposase. KEY POINTS: • Three new DPRB strains can effectively remove high concentration of perchlorate. • The PRIs of three DPRB strains are acquired from a single ancestral PRI. • PRIs are incorporated into different bacteria genome through HGT by transposase.

[Study on the axial strain sensor of birefringence photonic crystal fiber loop mirror based on the absolute integral of the monitoring peak].

In the present paper, the theoretical expression of the wavelength change and the axial strain of birefringence fiber loop mirror is developed. The theoretical result shows that the axial strain sensitivity of birefringence photonic crystal fiber loop mirror is much lower than conventional birefringence fiber loop mirror. It is difficult to measure the axial strain by monitoring the wavelength change of birefringence photonic crystal fiber loop mirror, and it is easy to cause the measurement error because the output spectrum is not perfectly smooth. The different strain spectrum of birefringence photonic crystal fiber loop mirror was measured experimentally by an optical spectrum analyzer. The measured spectrum was analysed. The results show that the absolute integral of the monitoring peak decreases with increasing strain and the absolute integral is linear versus strain. Based on the above results, it is proposed that the axial strain can be measured by monitoring the absolute integral of the monitoring peak in this paper. The absolute integral of the monitoring peak is a comprehensive index which can indicate the light intensity of different wavelength. This method of monitoring the absolute integral of the monitoring peak to measure the axial strain can not only overcome the difficulty of monitoring the wavelength change of birefringence photonic crystal fiber loop mirror, but also reduce the measurement error caused by the unsmooth output spectrum.

[The evolution and application of microsatellites].

Microsatellites,simple sequence repeats (SSR),are abundant and distributed throughout the eukaryote genome. The contents of microsatellites are variant in different creatures. There are also different types of microsatellites, which are dominant in different creatures. One of the most noticeable characters of microsatellites is that they are easy to expand during DNA replication. It is thought to attribute to DNA slippage. This kind of mutation is affected by many factors. It is guessed that microsatellites come from pro-microsatellites, while the pro-microsatellites origin from random point mutations. The length of microsatellites can be maintained under relative conservative ranges during species evolution. As they are abundant, codominatnt,distributed over the euchromatic part of the genome, and have the character of highly polimorphic, microsatellites are useful tools for gene mapping, clinical diagnosis and predicting, paternity or pedigree analysis, evolution study, and marker-assisted breeding.