Detalhe da pesquisa
1.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res
; 50(W1): W108-W114, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524558
2.
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Brief Bioinform
; 22(2): 1848-1859, 2021 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32313939
3.
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinformatics
; 36(16): 4473-4482, 2020 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32403123
4.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Mol Syst Biol
; 16(8): e9110, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32845085
5.
Sex Dimorphism of Nonalcoholic Fatty Liver Disease (NAFLD) in Pparg-Null Mice.
Int J Mol Sci
; 22(18)2021 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-34576136
6.
Network Reconstruction and Significant Pathway Extraction Using Phosphoproteomic Data from Cancer Cells.
Proteomics
; 19(21-22): e1800450, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-31472481
7.
MaBoSS 2.0: an environment for stochastic Boolean modeling.
Bioinformatics
; 33(14): 2226-2228, 2017 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28881959
8.
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells.
PLoS Comput Biol
; 13(3): e1005432, 2017 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-28306714
9.
Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals.
PLoS Genet
; 10(3): e1004155, 2014 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-24603613
10.
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinformatics
; 31(7): 1154-9, 2015 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25619997
11.
On circuit functionality in Boolean networks.
Bull Math Biol
; 75(6): 906-19, 2013 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-23504387
12.
A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint.
NPJ Syst Biol Appl
; 9(1): 33, 2023 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-37454172
13.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Front Immunol
; 14: 1282859, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-38414974
14.
UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling.
Front Mol Biosci
; 9: 800152, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35309516
15.
Diversity and plasticity of Th cell types predicted from regulatory network modelling.
PLoS Comput Biol
; 6(9): e1000912, 2010 Sep 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-20824124
16.
Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer.
Nat Commun
; 12(1): 124, 2021 01 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-33402734
17.
Interplay between SMAD2 and STAT5A is a critical determinant of IL-17A/IL-17F differential expression.
Mol Biomed
; 2(1): 9, 2021 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-35006414
18.
Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions.
Biomolecules
; 11(2)2021 02 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-33670716
19.
Logical modelling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.
Interface Focus
; 11(4): 20200061, 2021 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-34123352
20.
Computational Verification of Large Logical Models-Application to the Prediction of T Cell Response to Checkpoint Inhibitors.
Front Physiol
; 11: 558606, 2020.
Artigo
em Inglês
| MEDLINE | ID: mdl-33101049