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1.
Antonie Van Leeuwenhoek ; 114(2): 151-159, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33449223

RESUMO

An aerobic, Gram-negative, non-motile, non-spore-forming, rod-shaped, and pale yellow-colored bacterial strain, designated TS118T, was isolated from a sand sample obtained from a coastal sand dune after exposure to 3 kGy of gamma radiation. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was a member of the genus Spirosoma and most closely related to Spirosoma metallicum PR1014kT (95.1% similarity). The genome of strain TS118T is constituted by one chromosome (5,691,492 bp) and one plasmid (28,440 bp) and has a G + C content of 52.7%. The genome contains 4641 protein coding sequences (CDSs), 38 tRNAs, and 11 rRNAs. The predominant fatty acids of strain TS118T were C16:1 ω5c, iso-C15:0, C16:0, summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), and iso-C17:0 3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified amino lipid and an unidentified aminophospholipid. The main respiratory quinone was menaquinone-7 (MK-7). The novel strain showed resistance to gamma radiation with a D10 value (i.e., the dose required to reduce the bacterial population by tenfold) of 4.3 kGy. Based on the phylogenetic, physiological, and chemotaxonomic characteristics, strain TS118T represents a novel species, for which the name Spirosoma taeanense sp. nov. is proposed. The type strain is TS118T (=KCTC 72898T =JCM 34024T).


Assuntos
Areia , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Composição de Bases , Cytophagaceae , DNA Bacteriano/genética , Ácidos Graxos/análise , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Vitamina K 2
2.
Curr Microbiol ; 77(12): 4167-4173, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-33025184

RESUMO

An aerobic, Gram-stain-negative, non-motile, non-spore-forming, rod-shaped and pink-colored bacterial strain, designated BRD72T, was isolated from a crater lake (Baengnokdam) at the top of Mt. Hallasan in the Republic of Korea. Cells were catalase-positive and oxidase-negative. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that the isolate was a member of the genus Hymenobacter and most closely related to Hymenobacter marinus KJ035T (96.2% similarity). The isolate was found to produce carotenoid pigment, but not flexirubin-type pigment. The predominant fatty acids of strain BRD72T were summed feature 3 (C16:1 ω7c and/or C16:1 ω6c, 21.6%), iso-C15:0 (17.9%), anteiso-C15:0 (13.3%) and summed feature 4 (iso-C17:1 I and/or anteiso-C17:1 B, 11.3%). The major polar lipids were phosphatidylethanolamine, an unidentified amino lipid, and two unidentified aminophospholipids. The main respiratory quinone was menaquinone-7 (MK-7), and the main polyamine was homospermidine. The DNA G+C content was 59.8 mol%. Based on the phylogenetic, physiological, and chemotaxonomic characteristics, strain BRD72T represents a novel species, for which the name Hymenobacter baengnokdamensis sp. nov. is proposed. The type strain is BRD72T (= KCTC 72649T = JCM 33837T).


Assuntos
Lagos , Solo , Técnicas de Tipagem Bacteriana , Bacteroidetes , DNA Bacteriano/genética , Ácidos Graxos/análise , Filogenia , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2
3.
Int J Syst Evol Microbiol ; 68(1): 277-282, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29148363

RESUMO

A non-motile, pink-coloured and rod-shaped bacterium, designated strain POA9T, was isolated from a wastewater treatment facility, Republic of Korea. Cells were Gram-reaction-negative, aerobic, catalase-positive and oxidase-negative. The major fatty acids were C16 : 1ω5c, iso-C15 : 0, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and anteiso-C15 : 0. The strain contained MK-7 as the only isoprenoid quinone, phosphatidylethanolamine as the major polar lipid and sym-homospermidine as the major polyamine. The DNA G+C content was 57 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain POA9T forms a distinct evolutionary lineage within the radiation enclosing the members of the genus Hymenobacter, sharing the highest similarity with Hymenobacter actinosclerus CCUG 39621T (95.5 % sequence similarity) followed by Hymenobacterseoulensis 16F7GT (95.5 %), Hymenobactertibetensis XTM003T (95.4 %), Hymenobacterrutilus K2-33028T (95.4 %) and Hymenobacter psychrotolerans Tibet-IIU11T (94.9 %). A number of phenotypic characteristics distinguished strain POA9T from the related members of the genus Hymenobacter. On the basis of the evidence presented in this study, a novel species, Hymenobacter defluvii sp. nov., is proposed for strain POA9T (=KCTC 52270T=JCM 31658T).


Assuntos
Cytophagaceae/classificação , Filogenia , Águas Residuárias/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , Cytophagaceae/genética , Cytophagaceae/isolamento & purificação , DNA Bacteriano/genética , Ácidos Graxos/química , Fosfatidiletanolaminas/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Espermidina/análogos & derivados , Espermidina/química , Tibet , Vitamina K 2/análogos & derivados , Vitamina K 2/química
4.
Int J Syst Evol Microbiol ; 68(3): 899-904, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29458481

RESUMO

A non-motile, proteorhodopsin-containing, yellow and rod-shaped bacterial strain, designated ZODW10T, was isolated from the seaweed Zostera marina collected from the West Sea, Republic of Korea. Cells were Gram-stain-negative, aerobic and non-motile. The isolate required sea salts for growth. A carotenoid pigment was produced. A phylogenetic tree based on 16S rRNA gene sequences showed that strain ZODW10T forms an evolutionary lineage within the radiation enclosing members of the genus Dokdonia with Dokdoniadiaphoros CIP 108745T (96.7 % sequence similarity) as its nearest neighbour. The major fatty acids were iso-C15:0, iso-C17 : 0 3-OH and iso-C15 : 1 G. Strain ZODW10T contained menaquinone 6 (MK-6) and phosphatidylethanolamine, an unidentified aminolipid and an unidentified polar lipid as the only isoprenoid quinone and the major polar lipids, respectively. The DNA G+C content of strain ZODW10T was 36 mol%. On the basis of the present polyphasic characterization, it is suggested that the isolate represents a novel species of the genus Dokdonia, for which the name Dokdonia flava sp. nov. (type strain, ZODW10T=KCTC 52953T=JCM 32293T) is proposed.


Assuntos
Flavobacteriaceae/classificação , Filogenia , Alga Marinha/microbiologia , Zosteraceae/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Fosfatidiletanolaminas/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
5.
Int J Syst Evol Microbiol ; 68(10): 3266-3272, 2018 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-30113301

RESUMO

A Gram-stain-negative, non-spore-forming, rod-shaped, aerobic and diffusible yellow-coloured bacterial strain, designated strain ECD12T was isolated from a seaweed, Ecklonia cava. The isolate required sea salts for growth. Catalase-positive and oxidase-negative. A phylogenetic tree based on 16S rRNA gene sequences showed that strain ECD12T formed an evolutionary lineage within the radiation enclosing the members of genera Spongiibacterium and Flagellimonas sharing the highest similarity to Flagellimonas eckloniae DOKDO007T (96.8 % 16S rRNA gene sequence similarity) followed by Spongiibacterium pacificum SW169T (96.4 %) and Spongiibacterium flavum DSM 22638T (96.1 %). The major fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 1 G. The new isolate contained MK-6 as the only isoprenoid quinone and phosphatidylethanolamine, two unidentified amino lipids and two unidentified lipids as the major polar lipids. The genomic DNA G+C content is 39 mol%. A number of phenotypic characteristics such as the production of diffusible pigment distinguished strain ECD12T from the related species. On the basis of the evidence presented in this study, a novel species, Flagellimonas aquimarina sp. nov., is proposed for strain ECD12T (=KCTC 52351T=JCM 32292T). Based on the sequence similarity, phylogenetic relationship and common morphological, physiological and chemical characters among the members of the genera Spongiibacterium and Flagellimonas, it is recommended that the two genera are combined into a single genus. Thus, transfer of S. flavumYoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus FlagellimonasBae et al. 2007 as Flagellimonas flava comb. nov. and Flagellimonas pacifica comb. nov., respectively, is also proposed.


Assuntos
Flavobacteriaceae/classificação , Phaeophyceae/microbiologia , Filogenia , Alga Marinha/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Fosfatidiletanolaminas/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
6.
Int J Syst Evol Microbiol ; 68(5): 1697-1701, 2018 May.
Artigo em Inglês | MEDLINE | ID: mdl-29570445

RESUMO

A non-motile, orange-coloured and rod-shaped bacterial strain, designated strain ZOW29T, was isolated from a seaweed sample collected from the South Sea, Republic of Korea. Cells were Gram-stain-negative, aerobic and non-motile. The isolate required sea salts for growth. Carotenoid pigment was produced. A phylogenetic tree based on 16S rRNA gene sequences showed that strain ZOW29T forms an evolutionary lineage within the radiation enclosing the members of the genus Dokdonia with Dokdonia diaphoros MSKK-32T, Dokdonia eikasta PMA-26Tand Dokdonia donghaensis DSW-1T (97.1 % sequence similarity each) as its nearest neighbours. The DNA-DNA relatedness values between strain ZOW29T and these four type strains were 35-48 %. The major fatty acids were iso-C15:0, iso-C17 : 0 3-OH and iso-C15 : 1 G. Strain ZOW29T contained MK-6 and phosphatidylethanolamine, an unidentified aminolipid and an unidentified polar lipid as the only isoprenoid quinone and the major polar lipids, respectively. The DNA G+C content of strain ZOW29T was 38 mol%. On the basis of polyphasic characterization, it is suggested that the isolate represents a novel species of the genus Dokdonia, for which the name Dokdonia aurantiaca sp. nov. (type strain, ZOW29T=KCTC 52956T=JCM 32295T) is proposed.


Assuntos
Flavobacteriaceae/classificação , Filogenia , Alga Marinha/microbiologia , Zosteraceae/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Hibridização de Ácido Nucleico , Fosfatidiletanolaminas/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
7.
Mar Drugs ; 16(4)2018 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-29659509

RESUMO

Antartin (1), a new zizaane-type sesquiterpene, was isolated from Streptomyces sp. SCO736. The chemical structure of 1 was assigned from the interpretation of 1D and 2D NMR in addition to mass spectrometric data. The relative stereochemistry of 1 was determined by analysis of NOE data, while the absolute stereochemistry was decided based on a comparison of experimental and calculated electronic circular dichroism (ECD) spectra. Antartin (1) showed cytotoxicity against A549, H1299, and U87 cancer cell lines by causing cell cycle arrest at the G1 phase.


Assuntos
Citotoxinas/química , Sesquiterpenos/química , Streptomyces/química , Células A549 , Regiões Antárticas , Linhagem Celular Tumoral , Dicroísmo Circular , Citotoxinas/farmacologia , Fase G1/efeitos dos fármacos , Sedimentos Geológicos/microbiologia , Humanos , Espectroscopia de Ressonância Magnética/métodos , Sesquiterpenos/farmacologia
8.
Int J Syst Evol Microbiol ; 67(11): 4482-4486, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28933321

RESUMO

A non-motile, yellow-coloured and rod-shaped bacterium, designated strain SFD34T, was isolated from seaweed collected from the South Sea, Republic of Korea. Cells were Gram-stain-negative, aerobic, catalase-positive and oxidase-negative. The major fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 1 G. Strain SFD34T contained MK-6 and phosphatidylethanolamine as the only isoprenoid quinone and major polar lipid, respectively. The DNA G+C content was 35 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain SFD34T formed evolutionary lineage within the radiation enclosing the members of the genus Dokdonia with Dokdoniapacifica SW230T (96.86 % sequence similarity) as its nearest neighbour. A number of phenotypic characteristics distinguished strain SFD34T from related members of the genus Dokdonia. On the basis of the evidence presented in this study, a novel species, Dokdonia lutea sp. nov., is proposed for strain SFD34T (=KCTC 52269T=JCM 31795T).


Assuntos
Flavobacteriaceae/classificação , Filogenia , Sargassum/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Fosfatidiletanolaminas/química , RNA Ribossômico 16S/genética , República da Coreia , Alga Marinha/microbiologia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
9.
Int J Syst Evol Microbiol ; 67(7): 2171-2177, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28691666

RESUMO

A non-motile, red-pink-coloured, rod-shaped bacterium, designated strain POB6T, was isolated from a wastewater treatment facility, Republic of Korea. Cells were Gram-stain-negative, aerobic, catalase-positive and oxidase-negative. The major fatty acids were iso-C15 : 0, C16 : 1ω5c, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and summed feature 4 (iso-C17 : 1 I and/or anteiso-C17 : 1 B). The strain contained menaquinone MK-7 as the only isoprenoid quinone, phosphatidylethanolamine as the major polar lipid and sym-homospermidine as the major polyamine. The DNA G+C content was 61 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain POB6T forms a distinct evolutionary lineage within the radiation enclosing the members of the genus Hymenobacter, sharing the highest similarity with Hymenobacterrigui WPCP131T (97.5 %) followed by Hymenobacter xinjiangensis X2-1gT (97.2 %), Hymenobacter perfusus A1-12T (97.2 %) and Hymenobacter gelipurpurascens Txg-1T (97.1 %). A number of phenotypic characteristics distinguished strain POB6T from related members of the genus Hymenobacter. On the basis of the evidence presented in this study, a novel species, Hymenobacter tenuis sp. nov., is proposed, with POB6T (=KCTC 52271T=JCM 31659T) as the type strain.


Assuntos
Cytophagaceae/classificação , Filogenia , Águas Residuárias/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , Cytophagaceae/genética , Cytophagaceae/isolamento & purificação , DNA Bacteriano/genética , Ácidos Graxos/química , Fosfatidiletanolaminas/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Espermidina/análogos & derivados , Espermidina/química , Vitamina K 2/análogos & derivados , Vitamina K 2/química
10.
Int J Syst Evol Microbiol ; 67(6): 1672-1675, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28211311

RESUMO

A Gram-stain-negative, aerobic, rod-shaped (1.4-3.6×0.4-0.6 µm) and motile marine bacterium, designated as MEBiC09124T, was isolated from tidal flat sediment of Suncheon Bay, South Korea. 16S rRNA gene sequence analysis revealed that strain MEBiC09124T showed high similarity to Oleiagrimonas soli 3.5XT (96.7 %). Growth was observed at 18-38 °C (optimum 30 °C), at pH 4.0-8.5 (optimum pH 7.5) and with 0-6 % (w/v) (optimum 2.5 %) NaCl. The predominant cellular fatty acids were iso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and summed feature 9 (comprising 10-methyl C16 : 0 and/or iso-C17 : 1ω9c). The DNA G+C content was 66.1 mol%. The major respiratory quinone was Q-8. Biochemical characteristics such as production of acetoin and enzyme activities of trypsin, α-chymotrypsin and N-acetyl-ß-glucosaminidase differentiated strain MEBiC09124T from O. soli 3.5XT. On the basis of data from this polyphasic taxonomic study, strain MEBiC09124T (=KCCM 43131T=JCM 30904T) is classified as the type strain of a novel species in the genus Oleiagrimonas, for which the name Oleiagrimonas citrea sp. nov. is proposed. Emended descriptions of the genus Oleiagrimonas and Oleiagrimonas soli are also given.


Assuntos
Gammaproteobacteria/classificação , Sedimentos Geológicos/microbiologia , Filogenia , Água do Mar/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Fosfolipídeos/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
11.
Int J Syst Evol Microbiol ; 67(8): 3089-3094, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28820110

RESUMO

Two Gram-stain-negative, non-spore-forming, rod-shaped, aerobic and yellow-coloured bacterial strains, designated strains ECD14T and EC2D5T, were isolated from a seaweed Eckloniacava. The isolates required sea salts for growth. Flexirubin-type and carotenoid pigment was produced. The 16S rRNA gene sequence similarity between the two new strains was 95.5 %. Flavivirga amylovorans JC2681T was the nearest neighbour of strains ECD14T and EC2D5T with 96.5 and 96.8 % 16S rRNA gene sequence similarity, respectively. The common major fatty acids and respiratory quinones were iso-C15 : 0, iso-C15 : 1 G and unknown 13.565 and menaquinone 6 (MK-6), respectively. The common major polar lipids were phosphatidylethanolamine, an unknown amino lipid and an unknown lipid. The DNA G+C contents of strains ECD14T and EC2D5T were 33 and 31 mol%, respectively. On the basis of the polyphasic characterization of the two strains, it is suggested that the two isolates represent novel species of the genus Flavivirga, for which the names Flavivirga eckloniae sp. nov. (type strain, ECD14T=KCTC 52352T=JCM 31797T) and Flavivirga aquimarina sp. nov. (type strain, EC2D5T=KCTC 52353T=JCM 31796T) are proposed.


Assuntos
Flavobacteriaceae/classificação , Phaeophyceae/microbiologia , Filogenia , Alga Marinha/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Fosfatidiletanolaminas/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Água do Mar/microbiologia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
12.
Int J Syst Evol Microbiol ; 67(11): 4790-4795, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28984217

RESUMO

A Gram-stain-negative, gliding and rod shaped bacterium, designated strain ZO2-23T was isolated from a seaweed sample collected from the West Sea, Republic of Korea. Cells are catalase-negative and oxidase-positive. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain ZO2-23T forms an independent lineage within the genus Kordia. Strain ZO2-23T was related to Kordia ulvae SC2T (98.0 %, 16S rRNA gene sequence similarity) and K. antarctica IMCC3317T (97.9 %). The major fatty acids of strain ZO2-23T were iso-C15 : 0, iso-C17 : 0 3-OH, summed feature 3 and iso-C15 : 0 3-OH. The only isoprenoid quinone of the isolate was menaquinone-6. The DNA G+C content of strain ZO2-23T was 31.7 mol%. Phenotypic characteristics distinguished strain ZO2-23T from the related species of the genus Kordia. On the basis of the evidences presented in this study, novel species, Kordia zosterae sp. nov., is proposed for strain ZO2-23T (=KCTC 52268T=JCM 31799T).


Assuntos
Flavobacteriaceae/classificação , Filogenia , Zosteraceae/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , RNA Ribossômico 16S/genética , República da Coreia , Alga Marinha/microbiologia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
13.
Int J Syst Evol Microbiol ; 67(9): 3540-3546, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28866993

RESUMO

An aerobic, gliding and yellow-pigmented bacterium, designated strain SFD31T, was isolated from brown alga collected from the South Sea, Republic of Korea. Cells were Gram-stain-negative, and catalase- and oxidase-positive. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain SFD31T forms an independent lineage within the genus Winogradskyella. Strain SFD31T was related distantly to Winogradskyella echinorum KMM 6211T (97.9 %, 16S rRNA gene sequence similarity), Winogradskyellalitoriviva KMM 6491T (97.4 %), Winogradskyellapulchriflava EM106T (97.2 %) and Winogradskyellaeckloniae EC29T (96.9 %). The major fatty acids of strain SFD31T were iso-C15 : 0, iso-C15 : 1 G, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and unknown 13.565. The only isoprenoid quinone of the isolate was menaquinone 6. The major polar lipids were phosphatidylethanolamine, four unidentified aminolipids and two unidentified lipids. The DNA G+C content of strain SFD31T was 36.0 mol%. Phenotypic characteristics distinguished strain SFD31T from the related species of the genus Winogradskyella. On the basis of the evidence presented in this study, a novel species, Winogradskyella flava sp. nov., is proposed for strain SFD31T (=KCTC 52348T=JCM 31798T).


Assuntos
Flavobacteriaceae/classificação , Filogenia , Sargassum/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Fosfatidiletanolaminas/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/química
14.
Int J Syst Evol Microbiol ; 67(6): 2031-2035, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28632116

RESUMO

A novel strain designated 11G32T was isolated from an agricultural soil cultivated with Chinese cabbage in Korea. The cells were Gram-stain-negative, aerobic, non-motile and rod-shaped. The strain grew at 15-28 °C (optimum, 20 °C), pH 5.0-7.0 (optimum, pH 5.0-6.0) and without NaCl. Phylogenetically, the strain was found to be closely related to members of the genus Reyranella and showed 16S rRNA gene sequence similarities of 97.18, 96.76 and 95.99 % with Reyranella graminifolii Wo-34T, Reyranella massiliensis 521T and Reyranella soli KIS14-15T, respectively. The major fatty acids were C19 : 0 cyclo ω8c, C16 : 0, summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and 11-methyl C18 : 1ω7c. The predominant ubiquinone was Q-10. The polar lipids profile revealed the presence of phosphatidylmonomethylethanolamine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, unidentified aminolipids, unidentified phospholipids and unidentified lipids. On the basis of data presented, strain 11G32T is considered to represent a novel species of the genus Reyranella, for which the name Reyranella terrae sp. nov. is proposed. The type strain is 11G32T (=KACC 18486T=NBRC 111476T).


Assuntos
Agricultura , Filogenia , Rhodospirillales/classificação , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Composição de Bases , Brassica , Produtos Agrícolas , DNA Bacteriano/genética , Ácidos Graxos/química , Fosfolipídeos/química , RNA Ribossômico 16S/genética , República da Coreia , Rhodospirillales/genética , Rhodospirillales/isolamento & purificação , Análise de Sequência de DNA , Ubiquinona/química
15.
Int J Syst Evol Microbiol ; 67(8): 2834-2841, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28820093

RESUMO

Two aerobic, Gram-stain-negative, gliding and yellow-pigmented bacteria, designated strains 03SUJ6T and WM95T were isolated from freshwater sediment of Juam reservoir and freshwater of Woopo wetland, Republic of Korea, respectively. Cells of the two strains are motile by gliding and catalase- and oxidase-positive. The 16S rRNA gene sequence similarity between 03SUJ6T and WM95T was 97.7 %, but their DNA-DNA relatedness was 55.1 %. A maximum-likelihood phylogenetic tree based on 16S rRNA gene sequences showed that 03SUJ6T and WM95T each form independent lineages within the genus Sphingomonas. 03SUJ6T was related distantly to Sphingomonas daechungensis CH15-11T (97.4 % 16S rRNA gene sequence similarity), Sphingomonas ginsengisoliGsoil 634T (97.3 %) and Sphingomonas astaxanthinifaciens DMS 22298T (97.1 %). Closest relatives of strain WM95T were S. daechungensis CH15-11T (98.2 %), Sphingomonasjaspsi DSM 18422T (97.6 %), Sphingomonas sediminicolaDae 20T (97.5 %), Sphingomonaslutea JS5T (97.4 %) and S. ginsengisoliGsoil 634T (97.2 %). The major fatty acids of the two isolates were summed feature 8 and C16 : 0. The predominant isoprenoid quinone was ubiquinone-10. The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and sphingoglycolipid. sym-Homospermidine was the major polyamine of the isolates. Phenotypic characteristics distinguished 03SUJ6T and WM95T from the related species of the genus Sphingomonas. On the basis of the evidence presented in this study, the novel species, Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov. are proposed for strain 03SUJ6T (=KCTC 23331T=JCM 17543T) and strain WM95T (=KACC 18738T=JCM 31399T), respectively.


Assuntos
Água Doce/microbiologia , Filogenia , Sphingomonas/classificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Hibridização de Ácido Nucleico , Fosfolipídeos/química , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Espermidina/análogos & derivados , Espermidina/química , Sphingomonas/genética , Sphingomonas/isolamento & purificação , Ubiquinona/química
16.
Mar Drugs ; 15(5)2017 May 13.
Artigo em Inglês | MEDLINE | ID: mdl-28505073

RESUMO

Bioactivity-guided isolation of a crude extract from a culture broth of Bacillus sp. has led to the isolation of (-)-4-hydroxysattabacin (1). The inhibitory effect of (-)-4-hydroxysattabacin (1) was investigated on melanogenesis in the murine melanoma cell line, B16F10, and human melanoma cell line, MNT-1, as well as a pigmented 3D-human skin model. (-)-4-Hydroxysattabacin treatment decreased melanin contents in a dose-dependent manner in α-melanocyte stimulating hormone (α-MSH)-stimulated B16F10 cells. Quantitative real time PCR (qRT-PCR) demonstrated that treatment with (-)-4-hydroxysattabacin down-regulated several melanogenic genes, including tyrosinase, tyrosinase-related protein 1 (TRP-1), and tyrosinase-related protein 2 (TRP-2) while their enzymatic activities were unaffected. The anti-melanogenic effects of (-)-4-hydroxysattabacin were further demonstrated in a pigmented 3D human epidermal skin model, MelanodermTM, and manifested as whitening and regression of melanocyte activation in the tissue.


Assuntos
Organismos Aquáticos , Bacillus/metabolismo , Hexanonas/farmacologia , Animais , Linhagem Celular Tumoral , Sobrevivência Celular , Relação Dose-Resposta a Droga , Epiderme/efeitos dos fármacos , Hexanonas/química , Hexanonas/metabolismo , Humanos , Levodopa/administração & dosagem , Levodopa/farmacologia , Melaninas/metabolismo , Melanoma/metabolismo , Camundongos , Estrutura Molecular , Pigmentação/efeitos dos fármacos
17.
Int J Syst Evol Microbiol ; 66(12): 5493-5499, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27902188

RESUMO

An aerobic, Gram-stain-negative, gliding and yellow-pigmented bacterium, designated strain JS5T, was isolated from freshwater of Juam reservoir, Republic of Korea. Cells were catalase-positive and oxidase-negative. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain JS5T forms an independent lineage within the genus Sphingomonas. Strain JS5T was related distantly to 'Sphingomonas parvus' GP20-2 (98.2 % 16S rRNA gene sequence similarity), Sphingomonas sediminicola Dae 20T (96.8 %) and Sphingomonas daechungensis CH15-11T (96.7 %). The major fatty acids of strain JS5T were C16 : 0, summed feature 3 comprising C16 : 1ω7c and/or C16 : 1ω6c and summed feature 8 comprising C18 : 1ω7c and/or C18 : 1ω6c. The predominant isoprenoid quinone of the isolate was ubiquinone-10. The DNA G+C content of strain JS5T was 65 mol%. Phenotypic characteristics distinguished strain JS5T from related species of the genus Sphingomonas. On the basis of the evidence presented in this study, a novel species, Sphingomonaslutea sp. nov., is proposed to accommodate strain JS5T (=KCTC 23642T=JCM 18309T).


Assuntos
Água Doce/microbiologia , Filogenia , Sphingomonas/classificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Hibridização de Ácido Nucleico , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Sphingomonas/genética , Sphingomonas/isolamento & purificação , Ubiquinona/química
18.
Int J Syst Evol Microbiol ; 66(9): 3546-3551, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27267356

RESUMO

A non-motile and rod-shaped bacterium, designated strain WW84T, was isolated from freshwater collected from the Woopo wetland (Republic of Korea). Cells were Gram-stain-negative, aerobic, catalase-positive and oxidase-negative. The major fatty acids were C16 : 0, C18 : 0, iso-C15 : 0 and iso-C17 : 1I and/or anteiso-C17 : 1B. The strain contained MK-7 as the major isoprenoid quinone, phosphatidylethanolamine as the major polar lipid and sym-homospermidine as the major polyamine. The DNA G+C content was 59 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain WW84T forms an evolutionary lineage within the radiation including the members of the genus Hymenobacter with Hymenobactero cellatus Myx 2105T (96.96 % sequence similarity) as its nearest neighbor. A number of phenotypic characteristics distinguished strain WW84T from the related members of the genus Hymenobacter. On the basis of the evidence presented in this study, a novel species, Hymenobacter coalescens sp. nov. is proposed with strain WW84T (=KCTC 32530T=JCM 19493T) as the type strain.


Assuntos
Cytophagaceae/classificação , Água Doce/microbiologia , Filogenia , Áreas Alagadas , Técnicas de Tipagem Bacteriana , Composição de Bases , Cytophagaceae/genética , Cytophagaceae/isolamento & purificação , DNA Bacteriano/genética , Ácidos Graxos/química , Fosfatidiletanolaminas/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Espermidina/análogos & derivados , Espermidina/química , Vitamina K 2/análogos & derivados , Vitamina K 2/química
19.
Int J Syst Evol Microbiol ; 66(7): 2491-2496, 2016 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-27073894

RESUMO

A non-motile and yellow-pigmented bacterium, designated strain WW3T, was isolated from freshwater of Woopo wetland, Republic of Korea. Cells were Gram-reaction-negative, aerobic, catalase-positive and oxidase-negative. A maximum-likelihood phylogenetic tree based on 16S rRNA gene sequences showed that strain WW3T forms an independent lineage within the genus Altererythrobacter. Strain WW3T was related distantly to Altererythrobacter dongtanensisJM27T and Altererythrobacter troitsensisKMM 6042T (97.1% 16S rRNA gene sequence similarity). DNA-DNA relatedness between strain WW3T and the reference strains was low (30-41 %). The major fatty acids of strain WW3T were C17 : 1ω6c, C17 : 1ω8c, C15 : 0 2-OH and summed feature 8 comprising C18 : 1ω6c and/or C18 : 1ω7c. The predominant isoprenoid quinone of the isolate was ubiquinone-10. The DNA G+C content of strain WW3T was 63 mol%. Phenotypic characteristics distinguished strain WW3T from related species of the genus Altererythrobacter. On the basis of the evidence presented in this study,strain WW3T represents a novel species of the genus Altererythrobacter, for which the name Altererythrobacter rigui sp. nov. is proposed. The type strain is WW3T (=KCTC 42620T =JCM 30975T).


Assuntos
Alphaproteobacteria/classificação , Água Doce/microbiologia , Filogenia , Áreas Alagadas , Alphaproteobacteria/genética , Alphaproteobacteria/isolamento & purificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Hibridização de Ácido Nucleico , Pigmentação , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Ubiquinona/química
20.
Int J Syst Evol Microbiol ; 66(11): 4389-4394, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-27498791

RESUMO

A motile and rod-shaped bacterium, designated strain KYW1030T, was isolated from seawater collected from the Gwangyang bay (Republic of Korea). Cells were Gram-reaction-negative, aerobic, catalase-positive and oxidase-negative. The major fatty acids were summed feature 4 (iso-C17 : 1 I and/or anteiso-C17 : 1 B), iso-C15 : 0 and iso-C17 : 0 3-OH. The strain contained MK-7 as the major isoprenoid quinone, phosphatidylethanolamine and diphosphatidylglycerol as the major polar lipids and sym-homospermidine as the major polyamine. The DNA G+C content was 46 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain KYW1030T forms an evolutionary lineage within the radiation enclosing the members of the genus Pontibacter, with Pontibacterakesuensis AKS 1T (97.9 % 16S rRNA gene sequence similarity) as its nearest neighbour. A number of phenotypic characteristics distinguished strain KYW1030T from the related members of the genus Pontibacter. On the basis of the evidence presented in this study, a novel species, Pontibacter rugosus sp. nov., is proposed for strain KYW1030T (=KACC 18739T=JCM 31319T).


Assuntos
Cytophagaceae/classificação , Filogenia , Água do Mar/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , Cytophagaceae/genética , Cytophagaceae/isolamento & purificação , DNA Bacteriano/genética , Ácidos Graxos/química , Fosfolipídeos/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Espermidina/análogos & derivados , Espermidina/química , Vitamina K 2/análogos & derivados , Vitamina K 2/química
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