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1.
J Neurosci ; 42(40): 7624-7633, 2022 10 05.
Artigo em Inglês | MEDLINE | ID: mdl-36658459

RESUMO

Efforts to explain complex human decisions have focused on competing theories emphasizing utility and narrative mechanisms. These are difficult to distinguish using behavior alone. Both narrative and utility theories have been proposed to explain juror decisions, which are among the most consequential complex decisions made in a modern society. Here, we asked jury-eligible male and female subjects to rate the strength of a series of criminal cases while recording the resulting patterns of brain activation. We compared patterns of brain activation associated with evidence accumulation to patterns of brain activation derived from a large neuroimaging database to look for signatures of the cognitive processes associated with different models of juror decision-making. Evidence accumulation correlated with multiple narrative processes, including reading and recall. Of the cognitive processes traditionally viewed as components of utility, activation patterns associated with uncertainty, but not value, were more active with stronger evidence. Independent of utility and narrative, activations linked to reasoning and relational logic also correlated with increasing evidence. Hierarchical modeling of cognitive processes associated with evidence accumulation supported a more prominent role for narrative in weighing evidence in complex decisions. However, utility processes were also associated with evidence accumulation. These complementary findings support an emerging view that integrates utility and narrative processes in complex decisions.SIGNIFICANCE STATEMENT The last decade has seen a sharply increased interest in narrative as a central cognitive process in human decision-making and as an important factor in the evolution of human societies. However, the roles of narrative versus utility models of decision-making remain hotly debated. While available models frequently produce similar behavioral predictions, they rely on different cognitive processes and so their roles can be separated using the right neural tests. Here, we use brain imaging during mock juror decisions to show that cognitive processes associated with narrative, and to a lesser extent utility, were engaged while subjects evaluated evidence. These results are consistent with interactions between narrative and utility processes during complex decision-making.


Assuntos
Encéfalo , Tomada de Decisões , Humanos , Masculino , Feminino , Tomada de Decisões/fisiologia , Incerteza , Encéfalo/diagnóstico por imagem , Encéfalo/fisiologia , Resolução de Problemas , Rememoração Mental
2.
Proc Biol Sci ; 283(1822)2016 Jan 13.
Artigo em Inglês | MEDLINE | ID: mdl-26763711

RESUMO

Skin microbes play a role in human body odour, health and disease. Compared with gut microbes, we know little about the changes in the composition of skin microbes in response to evolutionary changes in hosts, or more recent behavioural and cultural changes in humans. No studies have used sequence-based approaches to consider the skin microbe communities of gorillas and chimpanzees, for example. Comparison of the microbial associates of non-human primates with those of humans offers unique insights into both the ancient and modern features of our skin-associated microbes. Here we describe the microbes found on the skin of humans, chimpanzees, gorillas, rhesus macaques and baboons. We focus on the bacterial and archaeal residents in the axilla using high-throughput sequencing of the 16S rRNA gene. We find that human skin microbial communities are unique relative to those of other primates, in terms of both their diversity and their composition. These differences appear to reflect both ancient shifts during millions of years of primate evolution and more recent changes due to modern hygiene.


Assuntos
Microbiota , Primatas/microbiologia , Pele/microbiologia , Animais , Biodiversidade , Evolução Biológica , Gorilla gorilla/microbiologia , Humanos , Macaca mulatta/microbiologia , Pan troglodytes/microbiologia , Papio/microbiologia , RNA Arqueal/química , RNA Bacteriano/química , RNA Ribossômico/química
3.
Proc Biol Sci ; 283(1832): 20160992, 2016 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-31265523

RESUMO

[This corrects the article DOI: 10.1098/rspb.2015.2586.].

4.
Epilepsia ; 57(3): 376-85, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26799155

RESUMO

OBJECTIVE: Hippocampal sclerosis is the most common neuropathologic finding in cases of medically intractable mesial temporal lobe epilepsy. In this study, we analyzed the gene expression profiles of dentate granule cells of patients with mesial temporal lobe epilepsy with and without hippocampal sclerosis to show that next-generation sequencing methods can produce interpretable genomic data from RNA collected from small homogenous cell populations, and to shed light on the transcriptional changes associated with hippocampal sclerosis. METHODS: RNA was extracted, and complementary DNA (cDNA) was prepared and amplified from dentate granule cells that had been harvested by laser capture microdissection from surgically resected hippocampi from patients with mesial temporal lobe epilepsy with and without hippocampal sclerosis. Sequencing libraries were sequenced, and the resulting sequencing reads were aligned to the reference genome. Differential expression analysis was used to ascertain expression differences between patients with and without hippocampal sclerosis. RESULTS: Greater than 90% of the RNA-Seq reads aligned to the reference. There was high concordance between transcriptional profiles obtained for duplicate samples. Principal component analysis revealed that the presence or absence of hippocampal sclerosis was the main determinant of the variance within the data. Among the genes up-regulated in the hippocampal sclerosis samples, there was significant enrichment for genes involved in oxidative phosphorylation. SIGNIFICANCE: By analyzing the gene expression profiles of dentate granule cells from surgically resected hippocampal specimens from patients with mesial temporal lobe epilepsy with and without hippocampal sclerosis, we have demonstrated the utility of next-generation sequencing methods for producing biologically relevant results from small populations of homogeneous cells, and have provided insight on the transcriptional changes associated with this pathology.


Assuntos
Giro Denteado/metabolismo , Giro Denteado/patologia , Epilepsia do Lobo Temporal/diagnóstico , Epilepsia do Lobo Temporal/metabolismo , Análise de Componente Principal/métodos , Adulto , Giro Denteado/cirurgia , Eletroencefalografia/métodos , Epilepsia do Lobo Temporal/cirurgia , Feminino , Regulação da Expressão Gênica , Hipocampo/metabolismo , Hipocampo/patologia , Hipocampo/cirurgia , Humanos , Masculino , Pessoa de Meia-Idade , Esclerose , Adulto Jovem
5.
Soc Cogn Affect Neurosci ; 18(1)2023 02 23.
Artigo em Inglês | MEDLINE | ID: mdl-36264228

RESUMO

Jury decisions are among the most consequential social decisions in which bias plays a notable role. While courts take measures to reduce the influence of non-evidentiary factors, jurors may still incorporate biases into their decisions. One common bias, crime-type bias, is the extent to which the perceived strength of a prosecutor's case depends on the severity of the crime. Moral judgment, affect and social cognition have been proposed as core processes underlying this and other biases. Behavioral evidence alone has been insufficient to distinguish these explanations. To identify the mechanism underlying crime-type bias, we collected functional magnetic resonance imaging patterns of brain activation from mock jurors reading criminal scenarios. Brain patterns from crime-type bias were most similar to those associated with social cognition (mentalizing and racial bias) but not affect or moral judgment. Our results support a central role for social cognition in juror decisions and suggest that crime-type bias and cultural bias may arise from similar mechanisms.


Assuntos
Tomada de Decisões , Julgamento , Humanos , Princípios Morais , Viés , Cognição , Direito Penal
6.
Sci Adv ; 8(15): eabl5794, 2022 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-35417242

RESUMO

Reproduction and survival in most primate species reflects management of both competitive and cooperative relationships. Here, we investigated the links between neuroanatomy and sociality in free-ranging rhesus macaques. In adults, the number of social partners predicted the volume of the mid-superior temporal sulcus and ventral-dysgranular insula, implicated in social decision-making and empathy, respectively. We found no link between brain structure and other key social variables such as social status or indirect connectedness in adults, nor between maternal social networks or status and dependent infant brain structure. Our findings demonstrate that the size of specific brain structures varies with the number of direct affiliative social connections and suggest that this relationship may arise during development. These results reinforce proposed links between social network size, biological success, and the expansion of specific brain circuits.


Assuntos
Encéfalo , Comportamento Social , Animais , Encéfalo/diagnóstico por imagem , Humanos , Macaca mulatta , Lobo Temporal
7.
J Cell Biol ; 108(2): 613-24, 1989 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-2918027

RESUMO

Growth cones, the motile apparatus at the ends of elongating axons, are sites of extensive and dynamic membrane-cytoskeletal interaction and insertion of new membrane into the growing axon. One of the most abundant proteins in growth cone membranes is a protein designated GAP-43, whose synthesis increases dramatically in most neurons during periods of axon development or regeneration. We have begun to explore the role of GAP-43 in growth cone membrane functions by asking how the protein interacts with those membranes. Membrane-washing experiments indicate that mature GAP-43 is tightly bound to growth cone membranes, and partitioning of Triton X-114-solubilized GAP-43 between detergent-enriched and detergent-depleted phases indicates considerable hydrophobicity. The hydrophobic behavior of the protein is modulated by divalent cations, particularly zinc and calcium. In vivo labeling of GAP-43 in neonatal rat brain with [35S]methionine shows that GAP-43 is initially synthesized as a soluble protein that becomes attached to membranes posttranslationally. In tissue culture, both rat cerebral cortex cells and neuron-like PC12 cells actively incorporate [3H]palmitic acid into GAP-43. Isolated growth cones detached from their cell bodies also incorporate labeled fatty acid into GAP-43, suggesting active turnover of the fatty acid moieties on the mature protein. Hydrolysis of ester-like bonds with neutral hydroxylamine removes the bound fatty acid and exposes new thiol groups on GAP-43, suggesting that fatty acid is attached to the protein's only two cysteine residues, located in a short hydrophobic domain at the amino terminus. Modulation of the protein's hydrophobic behavior by divalent cations suggests that other domains, containing large numbers of negatively charged residues, might also contribute to GAP-43-membrane interactions. Our observations suggest a dynamic and reversible interaction of GAP-43 with growth cone membranes.


Assuntos
Axônios/metabolismo , Encéfalo/ultraestrutura , Membrana Celular/metabolismo , Ácidos Graxos/metabolismo , Proteínas de Membrana/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Neurônios/ultraestrutura , Processamento de Proteína Pós-Traducional , Acilação , Animais , Cálcio/farmacologia , Cátions Bivalentes , Córtex Cerebral/ultraestrutura , Cisteína/metabolismo , Proteína GAP-43 , Substâncias de Crescimento , Ácido Palmítico , Ácidos Palmíticos/metabolismo , Fosfoproteínas , Ratos , Ratos Endogâmicos , Solubilidade , Zinco/farmacologia
8.
J Cell Biol ; 89(1): 86-95, 1981 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-6164682

RESUMO

In an effort to understand the regulation of the transition of a mature neuron to the growth, or regenerating, state we have analyzed the composition of the axonally transported proteins in the retinal ganglion cells of the toad Bufo marinus after inducing axon regeneration by crushing the optic nerve. At increasing intervals after axotomy, we labeled the retinal ganglion cells with [35S]methionine and subsequently analyzed the labeled transported polypeptides in the crushed optic nerve by means of one- and two-dimensional electrophoretic techniques. The most significant conclusion from these experiments is that, while the transition from the mature to the regenerating state does not require a gross qualitative alteration in the composition of axonally transported proteins, the relative labeling of a small subset of rapidly transported proteins is altered dramatically (changes of more than 20-fold) and reproducibly (more than 30 animals) by axotomy. One of these growth-associated proteins (GAPs) was soluble in an aqueous buffer, while three were associated with a crude membrane fraction. The labeling of all three of the membrane-associated GAPs increased during the first 8 d after axotomy, and they continued to be labeled for at least 4 wk. The modulation of these proteins after axotomy is consistent with the possibility that they are involve in growth-specific functions and that the altered expression of a small number of genes is a crucial regulatory event in the transition of a mature neuron to a growth state. In addition to these selective changes in rapidly transported proteins, we observed the following more general metabolic correlates of the regeneration process: The total radioactive label associated with the most rapidly transported proteins (groups I and II) increased three to fourfold during the first 8 d after the nerve was crushed, while the total label associated with more slowly moving proteins (group IV) increased about 10-fold during this same period. Among these more slowly transported polypeptides, five were observed whose labeling increased much more than the average. Three of these five polypeptides resemble actin and alpha- and beta-tubulin in their electrophoretic properties.


Assuntos
Transporte Axonal , Axônios/fisiologia , Regeneração Nervosa , Proteínas do Tecido Nervoso/metabolismo , Retina/fisiologia , Animais , Bufo marinus , Eletroforese em Gel de Poliacrilamida , Cinética , Nervo Óptico/fisiologia
9.
J Cell Biol ; 89(1): 96-103, 1981 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-6164683

RESUMO

In an effort to determine whether the "growth state" and the "mature state" of a neuron are differentiated by different programs of gene expression, we have compared the rapidly transported (group I) proteins in growing and nongrowing axons in rabbits. We observed two polypeptides (GAP-23 and GAP-43) which were of particular interest because of their apparent association with axon growth. GAP-43 was rapidly transported in the central nervous system (CNS) (retinal ganglion cell) axons of neonatal animals, but its relative amount declined precipitously with subsequent development. It could not be reinduced by axotomy of the adult optic nerves, which do not regenerate; however, it was induced after axotomy of an adult peripheral nervous system nerve (the hypoglossal nerve, which does regenerate) which transported only very low levels of GAP-43 before axotomy. The second polypeptide, GAP-23 followed the same pattern of growth-associated transport, except that it was transported at significant levels in uninjured adult hypoglossal nerves and not further induced by axotomy. These observations are consistent with the "GAP hypothesis" that the neuronal growth state can be defined as an altered program of gene expression exemplified in part by the expression of GAP genes whose products are involved in critical growth-specific functions. When interpreted in terms of GAP hypothesis, they lead to the following conclusions: (a) the growth state can be subdivided into a "synaptogenic state" characterized by the transport of GAP-23 but not GAP-43, and an "axon elongation state" requiring both GAPs; (b) with respect to the expression of GAP genes, regeneration involves a recapitulation of a neonatal state of the neuron; and (c) the failure of mammalian CNS neurons to express the GAP genes may underly the failure of CNS axons to regenerate after axon injury.


Assuntos
Transporte Axonal , Axônios/fisiologia , Nervo Hipoglosso/fisiologia , Proteínas do Tecido Nervoso/metabolismo , Nervo Óptico/fisiologia , Retina/fisiologia , Nervo Vago/fisiologia , Animais , Eletroforese em Gel de Poliacrilamida , Peso Molecular , Coelhos
10.
J Cell Biol ; 124(4): 521-36, 1994 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8106550

RESUMO

In neuronal growth cones, the advancing tips of elongating axons and dendrites, specific protein substrates appear to undergo cycles of posttranslational modification by covalent attachment and removal of long-chain fatty acids. We show here that ongoing fatty acylation can be inhibited selectively by long-chain homologues of the antibiotic tunicamycin, a known inhibitor of N-linked glycosylation. Tunicamycin directly inhibits transfer of palmitate to protein in a cell-free system, indicating that tunicamycin inhibition of protein palmitoylation reflects an action of the drug separate from its previously established effects on glycosylation. Tunicamycin treatment of differentiated PC12 cells or dissociated rat sensory neurons, under conditions in which protein palmitoylation is inhibited, produces a prompt cessation of neurite elongation and induces a collapse of neuronal growth cones. These growth cone responses are rapidly reversed by washout of the antibiotic, even in the absence of protein synthesis, or by addition of serum. Two additional lines of evidence suggest that the effects of tunicamycin on growth cones arise from its ability to inhibit protein long-chain acylation, rather than its previously established effects on protein glycosylation and synthesis. (a) The abilities of different tunicamycin homologues to induce growth cone collapse very systematically with the length of the fatty acyl side-chain of tunicamycin, in a manner predicted and observed for the inhibition of protein palmitoylation. Homologues with fatty acyl moieties shorter than palmitic acid (16 hydrocarbons), including potent inhibitors of glycosylation, are poor inhibitors of growth cone function. (b) The tunicamycin-induced impairment of growth cone function can be reversed by the addition of excess exogenous fatty acid, which reverses the inhibition of protein palmitoylation but has no effect on the inhibition of protein glycosylation. These results suggest an important role for dynamic protein acylation in growth cone-mediated extension of neuronal processes.


Assuntos
Ácidos Graxos/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Neuritos/metabolismo , Tunicamicina/farmacologia , Acilação/efeitos dos fármacos , Animais , Células Cultivadas , Proteína GAP-43 , Glicoproteínas de Membrana/metabolismo , Células PC12 , Ácidos Palmíticos/metabolismo , Processamento de Proteína Pós-Traducional/efeitos dos fármacos , Ratos , Solubilidade
11.
Science ; 233(4765): 783-6, 1986 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-3738509

RESUMO

Growth cones are specialized structures that form the distal tips of growing axons. During both normal development of the nervous system and regeneration of injured nerves, growth cones are essential for elongation and guidance of growing axons. Developmental and regenerative axon growth is frequently accompanied by elevated synthesis of a protein designated GAP-43. GAP-43 has now been found to be a major component of growth-cone membranes in developing rat brains. Relative to total protein, GAP-43 is approximately 12 times as abundant in growth-cone membranes as in synaptic membranes from adult brains. Immunohistochemical localization of GAP-43 in frozen sections of developing brain indicates that the protein is specifically associated with neuropil areas containing growth cones and immature synaptic terminals. The results support the proposal that GAP-43 plays a role in axon growth.


Assuntos
Encéfalo/fisiologia , Substâncias de Crescimento/biossíntese , Proteínas de Membrana/biossíntese , Regeneração Nervosa , Proteínas do Tecido Nervoso/biossíntese , Nervo Óptico/fisiologia , Envelhecimento , Animais , Animais Recém-Nascidos , Anuros , Axônios/fisiologia , Encéfalo/crescimento & desenvolvimento , Membrana Celular/metabolismo , Feto , Proteína GAP-43 , Substâncias de Crescimento/isolamento & purificação , Proteínas de Membrana/isolamento & purificação , Proteínas do Tecido Nervoso/isolamento & purificação , Nervo Óptico/citologia , Ratos , Membranas Sinápticas/metabolismo
12.
Biophys J ; 94(1): 125-33, 2008 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-17827240

RESUMO

The lipid phosphatidylinositol 4,5-bisphosphate (PIP(2)) is critical for a number of physiological functions, and its presence in membrane microdomains (rafts) appears to be important for several of these spatially localized events. However, lipids like PIP(2) that contain polyunsaturated hydrocarbon chains are usually excluded from rafts, which are enriched in phospholipids (such as sphingomyelin) containing saturated or monounsaturated chains. Here we tested a mechanism by which multivalent PIP(2) molecules could be transferred into rafts through electrostatic interactions with polybasic cytoplasmic proteins, such as GAP-43, which bind to rafts via their acylated N-termini. We analyzed the interactions between lipid membranes containing raft microdomains and a peptide (GAP-43P) containing the linked N-terminus and the basic effector domain of GAP-43. In the absence or presence of nonacylated GAP-43P, PIP(2) was found primarily in detergent-soluble membranes thought to correspond to nonraft microdomains. However, when GAP-43P was acylated by palmitoyl coenzyme A, both the peptide and PIP(2) were greatly enriched in detergent-resistant membranes that correspond to rafts; acylation of GAP-43P changed the free energy of transfer of PIP(2) from detergent-soluble membranes to detergent-resistant membranes by -1.3 kcal/mol. Confocal microscopy of intact giant unilamellar vesicles verified that in the absence of GAP-43P PIP(2) was in nonraft microdomains, whereas acylated GAP-43P laterally sequestered PIP(2) into rafts. These data indicate that sequestration of PIP(2) to raft microdomains could involve interactions with acylated basic proteins such as GAP-43.


Assuntos
Proteína GAP-43/química , Microdomínios da Membrana/química , Fosfatidilinositol 4,5-Difosfato/química , Lipossomas Unilamelares/química , Ligação Proteica
13.
Neuron ; 3(3): 299-310, 1989 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-2641999

RESUMO

GAP-43 (a.k.a. B-50, F1, pp46, or neuromodulin) is a major growth cone membrane protein whose expression is widely correlated with successful axon elongation, but whose function remains unknown. To distinguish the structural features of GAP-43 most relevant to its cellular functions, we have determined features of the protein that are most highly conserved in vertebrate evolution. Comparison of fish and mammalian GAP-43 distinguishes two domains of the protein. A strictly conserved amino-terminal domain contains the putative site for fatty acylation and membrane attachment, a calmodulin binding domain, and a proposed phosphorylation site. In the much larger carboxy-terminal domain, amino acid composition is strongly conserved without extensive sequence conservation. This amino acid composition predicts an extended, negatively charged rod conformation with some similarity to the side arms of neurofilaments. The results suggest that the biological roles of GAP-43 may depend on an ability to form a dynamic membrane-cytoskeleton-calmodulin complex.


Assuntos
Glicoproteínas de Membrana/genética , Proteínas do Tecido Nervoso/genética , Vertebrados/genética , Animais , Sequência de Bases , Evolução Biológica , DNA , Peixes/genética , Proteína GAP-43 , Genes , Substâncias de Crescimento/genética , Mamíferos/genética , Dados de Sequência Molecular
14.
Nat Neurosci ; 4(1): 38-43, 2001 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-11135643

RESUMO

In contrast to peripheral nerves, damaged axons in the mammalian brain and spinal cord rarely regenerate. Peripheral nerve injury stimulates neuronal expression of many genes that are not generally induced by CNS lesions, but it is not known which of these genes are required for regeneration. Here we show that co-expressing two major growth cone proteins, GAP-43 and CAP-23, can elicit long axon extension by adult dorsal root ganglion (DRG) neurons in vitro. Moreover, this expression triggers a 60-fold increase in regeneration of DRG axons in adult mice after spinal cord injury in vivo. Replacing key growth cone components, therefore, could be an effective way to stimulate regeneration of CNS axons.


Assuntos
Axônios/metabolismo , Proteínas de Ligação a Calmodulina , Cones de Crescimento/metabolismo , Regeneração Nervosa/fisiologia , Proteínas do Tecido Nervoso , Neurônios/metabolismo , Medula Espinal/metabolismo , Animais , Axônios/efeitos dos fármacos , Axotomia , Separação Celular , Proteínas do Citoesqueleto/genética , Proteínas do Citoesqueleto/metabolismo , Proteínas do Citoesqueleto/farmacologia , Proteína GAP-43/genética , Proteína GAP-43/metabolismo , Proteína GAP-43/farmacologia , Gânglios Espinais/citologia , Gânglios Espinais/efeitos dos fármacos , Gânglios Espinais/metabolismo , Expressão Gênica , Cones de Crescimento/efeitos dos fármacos , Técnicas In Vitro , Camundongos , Camundongos Transgênicos , Fatores de Crescimento Neural/biossíntese , Fatores de Crescimento Neural/genética , Fatores de Crescimento Neural/farmacologia , Regeneração Nervosa/efeitos dos fármacos , Neurônios/efeitos dos fármacos , Medula Espinal/citologia , Medula Espinal/efeitos dos fármacos
15.
Nat Hum Behav ; 2(11): 856-866, 2018 11.
Artigo em Inglês | MEDLINE | ID: mdl-30931399

RESUMO

Concerns over wrongful convictions have spurred an increased focus on understanding criminal justice decision-making. This study describes an experimental approach that complements conventional mock-juror experiments and case studies by providing a rapid, high-throughput screen for identifying preconceptions and biases that can influence how jurors and lawyers evaluate evidence in criminal cases. The approach combines an experimental decision task derived from marketing research with statistical modeling to explore how subjects evaluate the strength of the case against a defendant. The results show that, in the absence of explicit information about potential error rates or objective reliability, subjects tend to overweight widely used types of forensic evidence, but give much less weight than expected to a defendant's criminal history. Notably, for mock jurors, the type of crime also biases their confidence in guilt independent of the evidence. This bias is positively correlated with the seriousness of the crime. For practicing prosecutors and other lawyers, the crime-type bias is much smaller, yet still correlates with the seriousness of the crime.


Assuntos
Crime/psicologia , Psicologia Forense , Julgamento , Modelos Psicológicos , Crime/legislação & jurisprudência , Culpa , Humanos
16.
J Neurosci ; 26(18): 4729-39, 2006 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-16672645

RESUMO

The NG2 chondroitin sulfate proteoglycan inhibits axon growth in vitro. Levels of NG2 increase rapidly in the glial scars that form at sites of CNS injury, suggesting that NG2 may inhibit axon regeneration. To determine the functions of NG2, we infused mixtures of neutralizing or non-neutralizing anti-NG2 monoclonal antibodies into the dorsally transected adult rat spinal cord and analyzed the regeneration of ascending mechanosensory axons anatomically. At 1 week after injury, ascending sensory axons in control animals terminated caudal to the lesion within an area containing dense deposits of NG2 immunoreactivity. In animals treated with the neutralizing anti-NG2 antibodies, labeled axons penetrated the caudal border of the lesion and grew into and beyond the lesion center. The low intrinsic growth capacity of adult neurons may also limit the ability of damaged axons to regenerate. To enhance growth, we combined antibody treatment with a peripheral nerve conditioning lesion. After a conditioning lesion and treatment with control, non-neutralizing antibodies, many sensory axons grew into the lesion core. These axons did not grow past the rostral border of the lesion; rather, they grew along the dorsal surface of the spinal cord and within any remaining pieces of the dorsal roots. In contrast, combining a peripheral nerve conditioning lesion with neutralizing anti-NG2 antibodies resulted in sensory axon regeneration past the glial scar and into the white matter rostral to the injury site. The combinatorial approach used here that neutralizes extrinsic inhibition and increases intrinsic growth results in anatomically correct axon regeneration, a prerequisite for functional recovery.


Assuntos
Anticorpos Monoclonais/uso terapêutico , Antígenos/imunologia , Axônios/efeitos dos fármacos , Regeneração Nervosa/efeitos dos fármacos , Neurônios Aferentes/patologia , Proteoglicanas/imunologia , Traumatismos da Medula Espinal/tratamento farmacológico , Análise de Variância , Animais , Western Blotting/métodos , Antígeno CD11b/metabolismo , Modelos Animais de Doenças , Ectodisplasinas , Feminino , Fibronectinas/metabolismo , Imunofluorescência/métodos , Proteína Glial Fibrilar Ácida/metabolismo , Imunoprecipitação/métodos , Laminectomia/métodos , Proteínas de Membrana/metabolismo , Proteínas da Mielina/metabolismo , Neuroglia/efeitos dos fármacos , Neuroglia/patologia , Proteínas Nogo , Doenças do Sistema Nervoso Periférico/tratamento farmacológico , Doenças do Sistema Nervoso Periférico/patologia , Ratos , Ratos Sprague-Dawley , Traumatismos da Medula Espinal/patologia , Fatores de Tempo , Fatores de Necrose Tumoral/metabolismo
17.
BMC Bioinformatics ; 8: 338, 2007 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-17854506

RESUMO

BACKGROUND: Biomedical ontologies are being widely used to annotate biological data in a computer-accessible, consistent and well-defined manner. However, due to their size and complexity, annotating data with appropriate terms from an ontology is often challenging for experts and non-experts alike, because there exist few tools that allow one to quickly find relevant ontology terms to easily populate a web form. RESULTS: We have produced a tool, OntologyWidget, which allows users to rapidly search for and browse ontology terms. OntologyWidget can easily be embedded in other web-based applications. OntologyWidget is written using AJAX (Asynchronous JavaScript and XML) and has two related elements. The first is a dynamic auto-complete ontology search feature. As a user enters characters into the search box, the appropriate ontology is queried remotely for terms that match the typed-in text, and the query results populate a drop-down list with all potential matches. Upon selection of a term from the list, the user can locate this term within a generic and dynamic ontology browser, which comprises the second element of the tool. The ontology browser shows the paths from a selected term to the root as well as parent/child tree hierarchies. We have implemented web services at the Stanford Microarray Database (SMD), which provide the OntologyWidget with access to over 40 ontologies from the Open Biological Ontology (OBO) website 1. Each ontology is updated weekly. Adopters of the OntologyWidget can either use SMD's web services, or elect to rely on their own. Deploying the OntologyWidget can be accomplished in three simple steps: (1) install Apache Tomcat 2 on one's web server, (2) download and install the OntologyWidget servlet stub that provides access to the SMD ontology web services, and (3) create an html (HyperText Markup Language) file that refers to the OntologyWidget using a simple, well-defined format. CONCLUSION: We have developed OntologyWidget, an easy-to-use ontology search and display tool that can be used on any web page by creating a simple html description. OntologyWidget provides a rapid auto-complete search function paired with an interactive tree display. We have developed a web service layer that communicates between the web page interface and a database of ontology terms. We currently store 40 of the ontologies from the OBO website 1, as well as a several others. These ontologies are automatically updated on a weekly basis. OntologyWidget can be used in any web-based application to take advantage of the ontologies we provide via web services or any other ontology that is provided elsewhere in the correct format. The full source code for the JavaScript and description of the OntologyWidget is available from http://smd.stanford.edu/ontologyWidget/.


Assuntos
Biologia Computacional/métodos , Software , Terminologia como Assunto , Linguagens de Programação , Interface Usuário-Computador , Vocabulário Controlado
18.
Cell Rep ; 16(2): 295-303, 2016 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-27346357

RESUMO

Here, we describe a targeted reverse genetic screen for thermal nociception genes in Drosophila larvae. Using laser capture microdissection and microarray analyses of nociceptive and non-nociceptive neurons, we identified 275 nociceptor-enriched genes. We then tested the function of the enriched genes with nociceptor-specific RNAi and thermal nociception assays. Tissue-specific RNAi targeted against 14 genes caused insensitive thermal nociception while targeting of 22 genes caused hypersensitive thermal nociception. Previously uncategorized genes were named for heat resistance (i.e., boilerman, fire dancer, oven mitt, trivet, thawb, and bunker gear) or heat sensitivity (firelighter, black match, eucalyptus, primacord, jet fuel, detonator, gasoline, smoke alarm, and jetboil). Insensitive nociception phenotypes were often associated with severely reduced branching of nociceptor neurites and hyperbranched dendrites were seen in two of the hypersensitive cases. Many genes that we identified are conserved in mammals.


Assuntos
Proteínas de Drosophila/genética , Drosophila melanogaster/genética , Nociceptividade , Nociceptores/fisiologia , Animais , Células Cultivadas , Sequência Conservada , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/citologia , Evolução Molecular , Feminino , Técnicas de Silenciamento de Genes , Larva/citologia , Larva/genética , Masculino , Morfogênese , Interferência de RNA , Resposta Táctica
19.
Anim Behav ; 103: 267-275, 2015 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-26034313

RESUMO

An ethological approach to attention predicts that organisms orient preferentially to valuable sources of information in the environment. For many gregarious species, orienting to other individuals provides valuable social information but competes with food acquisition, water consumption and predator avoidance. Individual variation in vigilance behaviour in humans spans a continuum from inattentive to pathological levels of interest in others. To assess the comparative biology of this behavioural variation, we probed vigilance rates in free-ranging macaques during water drinking, a behaviour incompatible with the gaze and postural demands of vigilance. Males were significantly more vigilant than females. Moreover, vigilance showed a clear genetic component, with an estimated heritability of 12%. Monkeys carrying a relatively infrequent 'long' allele of TPH2, a regulatory gene that influences serotonin production in the brain, were significantly less vigilant compared to monkeys that did not carry the allele. These findings resonate with the hypothesis that the serotonin pathway regulates vigilance in primates and by extension provoke the idea that individual variation in vigilance and its underlying biology may be adaptive rather than pathological.

20.
Curr Biol ; 24(24): 2920-5, 2014 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-25454784

RESUMO

The Drosophila gene pickpocket (ppk) encodes an ion channel subunit of the degenerin/epithelial sodium channel (DEG/ENaC) family. PPK is specifically expressed in nociceptive, class IV multidendritic (md) neurons and is functionally required for mechanical nociception responses. In this study, in a genome-wide genetic screen for other ion channel subunits required for mechanical nociception, we identify a gene that we name balboa (also known as CG8546, ppk26). Interestingly, the balboa locus encodes a DEG/ENaC ion channel subunit highly similar in amino acid sequence to PPK. Moreover, laser-capture isolation of RNA from larval neurons and microarray analyses reveal that balboa is also highly enriched in nociceptive neurons. The requirement for Balboa and PPK in mechanical nociception behaviors and their specific expression in larval nociceptors led us to hypothesize that these DEG/ENaC subunits form an ion channel complex in vivo. In nociceptive neurons, Balboa::GFP proteins distribute uniformly throughout dendrites but remarkably localize to discrete foci when ectopically expressed in other neuron subtypes (where PPK is not expressed). Indeed, ectopically coexpressing ppk transforms this punctate Balboa::GFP expression pattern to the uniform distribution observed in its native cell type. Furthermore, ppk-RNAi in class IV neurons alters the broad Balboa::GFP pattern to a punctate distribution. Interestingly, this interaction is mutually codependent as balboa-RNAi eliminates Venus::PPK from the sensory dendrites of nociceptors. Finally, using a GFP-reconstitution approach in transgenic larvae, we directly detect in vivo physical interactions among PPK and Balboa subunits. Combined, our results indicate a critical mechanical nociception function for heteromeric PPK and Balboa channels in vivo.


Assuntos
Proteínas de Drosophila/genética , Drosophila melanogaster/fisiologia , Canais Epiteliais de Sódio/genética , Nociceptividade , Canais de Sódio/genética , Animais , Animais Geneticamente Modificados/genética , Animais Geneticamente Modificados/crescimento & desenvolvimento , Animais Geneticamente Modificados/fisiologia , Canais de Sódio Degenerina/genética , Canais de Sódio Degenerina/metabolismo , Dendritos/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/genética , Drosophila melanogaster/crescimento & desenvolvimento , Canais Epiteliais de Sódio/metabolismo , Larva/fisiologia , Análise de Sequência com Séries de Oligonucleotídeos , Análise de Sequência de Proteína , Canais de Sódio/metabolismo
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