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1.
Microb Ecol ; 78(3): 603-617, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-30729265

RESUMO

Lake Dziani Dzaha (Mayotte Island, Indian Ocean) is a tropical thalassohaline lake which geochemical and biological conditions make it a unique aquatic ecosystem considered as a modern analogue of Precambrian environments. In the present study, we focused on the diversity of phytoplanktonic communities, which produce very high and stable biomass (mean2014-2015 = 652 ± 179 µg chlorophyll a L-1). As predicted by classical community ecology paradigms, and as observed in similar environments, a single species is expected to dominate the phytoplanktonic communities. To test this hypothesis, we sampled water column in the deepest part of the lake (18 m) during rainy and dry seasons for two consecutive years. Phytoplanktonic communities were characterized using a combination of metagenomic, microscopy-based and flow cytometry approaches, and we used statistical modeling to identify the environmental factors determining the abundance of dominant organisms. As hypothesized, the overall diversity of the phytoplanktonic communities was very low (15 OTUs), but we observed a co-dominance of two, and not only one, OTUs, viz., Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta). We observed a decrease in the abundance of these co-dominant taxa along the depth profile and identified the adverse environmental factors driving this decline. The functional traits measured on isolated strains of these two taxa (i.e., size, pigment composition, and concentration) are then compared and discussed to explain their capacity to cope with the extreme environmental conditions encountered in the aphotic, anoxic, and sulfidic layers of the water column of Lake Dziani Dzaha.


Assuntos
Clorófitas/crescimento & desenvolvimento , Lagos/microbiologia , Fitoplâncton/crescimento & desenvolvimento , Spirulina/crescimento & desenvolvimento , Biodiversidade , Biomassa , Clorofila A/metabolismo , Clorófitas/metabolismo , Ecossistema , Oceano Índico , Ilhas , Fitoplâncton/genética , Estações do Ano , Spirulina/metabolismo
2.
Arch Inst Pasteur Tunis ; 88(1-4): 29-34, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-23461140

RESUMO

In order to survey osmotic and oligotrophic stress consequence on pathogenic enterobacteria discharged in marine areas, we examined enterotoxigenic Escherichia coli (ETEC) and a reference (Ecoli O126:B16) strains during their survival (47 days) in wastewater microcosms, submerged in natural seawater and maintained in laboratory conditions. The results revealed that the survival time for the two strains was prolonged when bacterial cells were previously incubated in wastewater, with less cellular membrane damage. In addition, the wild clinical E. coli strain showed a better survival capacity than the reference E. coli strain one. For both, we noted some modifications in biochemical profiles relatively to the initial state, notably when they were previously incubated in wastewater microcosm.


Assuntos
Escherichia coli Enterotoxigênica/isolamento & purificação , Água do Mar/microbiologia , Águas Residuárias/microbiologia , Microbiologia da Água
3.
Water Environ Res ; 82(11): 2249-57, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21141386

RESUMO

This study investigated survival and virulence of Escherichia coli strains exposed to natural conditions in brackish water. Two E. coli strains (O126:B16 and O55:B5) were incubated in water microcosms in the Bizerte lagoon in northern Tunisia and exposed for 12 days to natural sunlight in June (231 to 386 W/m2, 26 +/- 1 degrees C, 30 g/L) and in April (227 to 330 W/m2, 17 +/- 1 degrees C, 27 g/L) or maintained in darkness for 21 days (17 +/- 1 degrees C, 27 g/L). The results revealed that sunlight was the most significant inactivating factor (decrease of 3 Ulog within 48 hours for the two strains) compared to salinity and temperature (in darkness). Survival time of the strains was prolonged as they were maintained in darkness. Local strain (E. coli O55:B5) showed better survival capacity (T90 = 52 hours) than E. coli O126:B16 (T90 = 11 h). For both, modifications were noted only for some metabolic activities of carbohydrates hydrolysis. Cytotoxicity of the two strains, tested on Vero cell, was maintained during the period of survival.


Assuntos
Escherichia coli/fisiologia , Microbiologia da Água , Água/química , Monitoramento Ambiental , Mar Mediterrâneo , Fatores de Tempo , Tunísia , Poluentes da Água
4.
J Appl Microbiol ; 107(6): 1935-46, 2009 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-19508294

RESUMO

AIMS: The aim of the present work was to characterize the heterotrophic bacterial community of a marine recirculating aquaculture system (RAS). METHODS AND RESULTS: An experimental RAS was sampled for the rearing water (RW) and inside the biofilter. Samples were analysed for bacterial abundances, community structure and composition by using a combination of culture-dependent and -independent techniques. The most represented species detected among biofilter clones was Pseudomonas stutzeri, while Ruegeria spp. and Roseobacter spp. were more abundant among isolates. In comparison, the genera Roseobacter and Ruegeria were well represented in both the biofilter and the RW samples. A variety of possible bacterial pathogens (e.g. Vibrio spp., Erwinia spp. and Coxiella spp.) were also identified in this study. CONCLUSIONS: Results revealed that the bacterial community in the RW was quite different to that associated with the biofilter. Moreover, data obtained suggest that the whole bacterial community can be involved in maintaining an effective and a stable rearing environment (shelter effect). SIGNIFICANCE AND IMPACT OF THE STUDY: Improving the reliability and the sustainability of RAS depends on the correct management of the bacterial populations inside it. This study furnishes more accurate information on the bacterial populations and better clarifies the existing relationships between the bacterial flora in the RW and that associated with the biofilter.


Assuntos
Bactérias/classificação , Pesqueiros , Água do Mar/microbiologia , Bactérias/isolamento & purificação , Bactérias/metabolismo , DNA Bacteriano/genética , Processos Heterotróficos , Polimorfismo de Fragmento de Restrição , RNA Ribossômico 16S/genética
5.
Microb Ecol ; 38(2): 180-189, 1999 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10441710

RESUMO

> Abstract A new procedure to investigate the relationship between bacterial cell size and activity at the cellular level has been developed; it is based on the coupling of radioactive labeling of bacterial cells and cell sorting by flow cytometry after SYTO 13 staining. Before sorting, bacterial cells were incubated in the presence of tritiated leucine using a procedure similar to that used for measuring bacterial production by leucine incorporation and then stained with SYTO 13. Subpopulations of bacterial cells were sorted according to their average right-angle light scatter (RALS) and fluorescence. Average RALS was shown to be significantly related to the average biovolume. Experiments were performed on samples collected at different times in a Mediterranean seawater mesocosm enriched with nitrogen and phosphorus. At four sampling times, bacteria were sorted in two subpopulations (cells smaller and larger than 0.25 µm(3)). The results indicate that, at each sampling time, the growth rate of larger cells was higher than that of smaller cells. In order to confirm this tendency, cell sorting was performed on six subpopulations differing in average biovolume during the mesocosm follow-up. A clear increase of the bacterial growth rates was observed with increasing cell size for the conditions met in this enriched mesocosm.http://link.springer-ny.com/link/service/journals/00248/bibs/38n2p180.html

6.
Microb Ecol ; 40(2): 148-158, 2000 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11029083

RESUMO

The study of relationships between cell size and productivity is of key importance in microbial ecology to understand which members of natural aquatic communities are responsible for the overall activity and/or productivity. Flow sorting of microorganisms from different environmental samples was used to analyze the activity of bacterial cells depending on their biovolume. Bacterial cells from five different natural samples taken along the Mediterranean coast including fresh- and seawaters were incubated with tritiated leucine, then stained with SYTO 13 and sorted by flow cytometry according to their average side-angle-scattered (SSC) light. In all samples, a bell-shaped relationship was found between cell biovolume and activity, whereas activity of a given cell-size class varied between samples. In contrast, an inverse relationship was found between biovolumes and abundances. These results suggest that medium-sized cells with highest growth rates are probably submitted to intense grazing. For one sample, bacteria within five different size classes were sorted and the genetic diversity of cells within each sorted size class and that of the whole community were analyzed by the denaturing gradient gel electrophoresis (DGGE) method. The genetic diversity, as determined at the community level was highly represented into the pool of small cells, whereas only few species were present into larger cell subpopulations. The results suggest that only a few genotypes may be dominant within the largest and most productive cells. Furthermore, cell size polymorphism as well as heterogeneous cellular activities were found within some species.

7.
Water Res ; 37(8): 1711-22, 2003 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-12697215

RESUMO

Consequences of short-term changes in thermotolerant coliform loads on their spatio-temporal distribution in a Mediterranean lagoon with large-scale mollusk farming (Thau lagoon, France) were explored using a simulation approach. Simulations were based on bacterial transport and survival coupled models forced by the input of bacterial loads from the two main rivers (Vène and Pallas) that flow into the lagoon. Different flow types (reference, sudden and constant), bringing the same bacterial load, were considered and subsequent spatial and temporal bacterial contamination of lagoon surface water and shellfish was estimated. Simulation results showed that as long as loads were high, hydrodynamical processes governed the distribution of bacterial abundance in receiving areas. As soon as loads decreased or when time supply increased, biological die-off processes became dominant. Bacterial contamination of shellfish induced by the different flow types appeared to depend on the receiving area. In the case of Pallas River area, a sudden input of bacteria led to a high bacterial contamination of shellfish but only during a short period ( approximately 1 day). A constant input of the same amount of bacteria induced a lower but significant contamination during all the simulation period (10 days). On the contrary, bacterial inputs from the Vène River led to shellfish contamination only when bacteria were delivered through a flood event. Exposure time of bacteria to adverse environmental conditions appeared to be the main explanation to the above-mentioned differences. Consequences of our results in terms of environmental management strategy were discussed.


Assuntos
Aquicultura , Enterobacteriaceae , Contaminação de Alimentos , Modelos Teóricos , Moluscos , Microbiologia da Água , Animais , França , Humanos , Região do Mediterrâneo , Dinâmica Populacional , Medição de Risco , Água do Mar , Temperatura , Distribuição Tecidual , Movimentos da Água
8.
Mar Pollut Bull ; 48(9-10): 852-62, 2004 May.
Artigo em Inglês | MEDLINE | ID: mdl-15111032

RESUMO

The Senegal River estuary was sampled in May 2002 to get the first data on both the trophic and sanitary status of the water of the main river of the northwest African coast. Several physical, chemical and microbiological variables were measured twice along a transect. Inorganic nutrient concentrations were low while phytoplanktonic abundances (0.58-1.8 x 10(5) cells ml(-1)), bacterial abundances (0.27-8.1 x 10(7) cells ml(-1)), activity (22-474 pmol l(-1) h(-1)), were among the highest recorded in such ecosystems. Microbiological variables revealed a eutrophicated status for this estuary. Largest abundances of fecal contamination bacterial indicators were only detected in localized areas (Saint-Louis city and surrounding areas). The apparent good survival of fecal indicator bacteria in the estuarine waters despite a long residence time (4-5 days) has been evaluated by complementary survival experiments. Exposed to a salinity gradient, a local Escherichia coli strain showed a significantly better survival than those of an E. coli reference strain.


Assuntos
Monitoramento Ambiental , Rios/química , Microbiologia da Água , Poluição da Água/análise , Escherichia coli/crescimento & desenvolvimento , Escherichia coli/isolamento & purificação , Eutrofização/fisiologia , Citometria de Fluxo , Plâncton/isolamento & purificação , Senegal , Cloreto de Sódio/análise , Fatores de Tempo
9.
Water Res ; 46(6): 1771-84, 2012 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-22280952

RESUMO

Although microscope analysis is very useful for studying phytoplankton community composition, it does not allow for high frequency (spatial and/or temporal) data acquisition. In an attempt to overcome this issue, fluorescence-based approaches that use selective excitation of pigment antennae have spread rapidly. However, the ability of spectral fluorescence to provide accurate estimates of phytoplankton biomass and composition is still debated, and only a few datasets have been tested to date. In this study, we sampled of a wide range of water bodies (n=50) in the Ile-de-France region (North Central France). We used the resulting extensive dataset to assess the ability of the bbe-Moldaenke FluoroProbe II (FP) to estimate phytoplankton community composition in lakes and reservoirs. We demonstrated that FP data yields better estimates of total phytoplankton biovolume than do spectrophotometric chlorophyll a measures and that FP data can be further corrected using the average chlorophyll a to biovolume ratio among phytoplankton groups. Overall, group-specific relationships between FP and biovolume data were consistent. However, we identified a number of cases where caution is required. We found that Euglenophytes are expected to depart from the global FP vs. biovolume relationship of the 'green' group due to varying Fv/Fm and pigment content in response to environmental conditions (photoautotrophic vs. photoheterotrophic growth). Then, it appears necessary to consider the composition of the Chromophytes community in order to obtain a good agreement between both biomass estimation methods. Finally, we confirmed the misattribution toward the 'red' group of phycoerythrin-containing cyanobacteria and the occurrence of a strong scattering in the relationship between the FP vs. biovolume of the 'blue' group that can be partly attributed to the occurrence of large colony-forming cyanobacteria (e.g., Microcystis spp, Aphanizomenon flos-aquae). We propose correcting procedures to improve the quality of data obtained from spectral fluorescence tools in the context of large-scale sampling of lakes and reservoirs.


Assuntos
Coleta de Dados , Monitoramento Ambiental/métodos , Corantes Fluorescentes/metabolismo , Lagos/microbiologia , Fitoplâncton/isolamento & purificação , Espectrometria de Fluorescência/métodos , Biomassa , Clorofila/isolamento & purificação , Clorofila A , França , Modelos Lineares , Fitoplâncton/classificação , Padrões de Referência
10.
J Appl Microbiol ; 102(1): 184-94, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17184334

RESUMO

AIMS: Microcosm experiments simulating an oil spill event were performed to evaluate the response of the natural microbial community structure of Messina harbour seawater following the accidental load of petroleum. METHODS AND RESULTS: An experimental harbour seawater microcosm, supplemented with nutrients and crude oil, was monitored above 15 days in comparison with unpolluted ones (control microcosms). Bacterial cells were counted with a Live/Dead BacLight viability kit; leucine aminopeptidase, beta-glucosidase, alkaline phosphatase, lipase and esterase enzymes were measured using fluorogenic substrates. The microbial community dynamic was monitored by isolation of total RNA, RT-PCR amplification of 16S rRNA, cloning and sequencing. Oil addition stimulated an increase of the total bacterial abundance, leucine aminopeptidase and phosphatase activity rates, as well as a change in the community structure. This suggested a prompt response of micro-organisms to the load of petroleum hydrocarbons. CONCLUSIONS: The present study on the viability, specific composition and metabolic characteristics of the microbial community allows a more precise assessment of oil pollution. Both structural and functional parameters offer interesting perspectives as indicators to monitor changes caused by petroleum hydrocarbons. SIGNIFICANCE AND IMPACT OF THE STUDY: A better knowledge of microbial structural successions at oil-polluted sites is essential for environmental bioremediation. Data obtained in microcosm studies improve our understanding of natural processes occurring during oil spills.


Assuntos
Desastres , Petróleo/toxicidade , Água do Mar/microbiologia , Microbiologia da Água , Poluentes Químicos da Água/toxicidade , Alcanivoraceae/classificação , Alcanivoraceae/enzimologia , Alcanivoraceae/isolamento & purificação , Biodegradação Ambiental , Contagem de Colônia Microbiana/métodos , Processos Heterotróficos/fisiologia , Hidrocarbonetos/química , Hidrocarbonetos/toxicidade , Leucil Aminopeptidase/metabolismo , Oxigênio/metabolismo , Monoéster Fosfórico Hidrolases/metabolismo , Filogenia , Proteobactérias/classificação , Proteobactérias/enzimologia , Proteobactérias/isolamento & purificação
11.
Environ Microbiol ; 7(1): 78-87, 2005 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-15643938

RESUMO

The distribution of bacterial communities terminal restriction fragment length polymorphism (T-RFLP) fingerprint patterns was evaluated at three proximal hydrocarbon-contaminated sites located within the harbour of Messina. In order to analyse the short-term variability of the individual terminal restriction fragment (T-RF) patterns, water samples were collected at the three sites on three occasions within 3 months (T(0), T(90) and T(91)). Four sample sizes, from 50 to 1000 ml for each collected sample, were analysed separately (36 total analysed samples) to evaluate the relationship between the sample size and the bacterial diversity estimates. The dominant T-RF groups mostly belonged to signatures of putative hydrocarbon-degrading bacteria, as revealed by the virtual analysis of the obtained bands. In order to test whether significant differences were occurring between the analysed samples, the Kruskal-Wallis non-parametric test was applied to the T-RF data set. Neither significant influence of the sample size nor short spatial variability within the three sampled sites was detected for each sampling time. On the contrary, significant temporal changes in the diversity of the bacterial communities were observed. These results were confirmed by the non-metric multidimensional scales (nMDS) analysis of the whole set of samples, which indicated three main groups corresponding to the three different sampling times. In summary, the T-RFLP technique, although a polymerase chain reaction-based method, proved to be a suitable technique for monitoring polluted marine environments, typically characterized by low diversity and high relative abundances of a few dominant groups.


Assuntos
Bactérias/classificação , Hidrocarbonetos/análise , Polimorfismo de Fragmento de Restrição , Água do Mar/microbiologia , Poluição da Água , Bactérias/genética , Bactérias/isolamento & purificação , Impressões Digitais de DNA/métodos , DNA Bacteriano/análise , DNA Ribossômico/análise , Ecossistema , Hidrocarbonetos/metabolismo , Itália , Petróleo/análise , Petróleo/metabolismo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
12.
Microb Ecol ; 7(4): 283-96, 1981 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24227544

RESUMO

Microbial ecologists attempting to describe community structures through the use of synthetic parameters face enormous difficulties. These stem in part from the necessity of using standard taxonomic reference levels in a field where the species level is poorly defined. This paper presents an attempt to obviate this problem. A "functional evenness" index (E) is defined using information measures; it is based directly on the characteristics of the bacteria, as determined, for example, with the API 20B method. Comparisons of this index with classic structure indices, such as taxonomic evenness (Pielou) or systematic dominance (Hulburt), show that it behaves like an evenness index, while bypassing the taxonomic study required before computation of the classic indices. Its use is illustrated with samples of aerobic heterotrophic bacteria obtained from brackish lagoon sediments.

13.
Microb Ecol ; 17(3): 227-35, 1989 May.
Artigo em Inglês | MEDLINE | ID: mdl-24197282

RESUMO

Time series of a population of fecal coliforms and a community of total viable counts were recorded during years 5 and 6 after the "birth" of an eutrophic aquatic ecosystem (sewage treatment lagoons). These time series were used to re-examine models, previously published, describing their temporal dynamics as well as the relationships between bacterial and environmental variables. The dynamics of the fecal coliforms and their relationships to the environment were unchanged; the fecal coliform abundances displayed an annual cycle with maximum reduction in numbers during the summer, which would be due at least partly to environmental variables (hypotheses of control by irradiance and pH, which have a seasonal behavior, are supported by the data). On the contrary, the total viable count dynamics moved towards a closer dependence on phytoplankton, from a situation of relative independence with respect to other biotic components of the ecosystem. Indeed during the first two years, only one of the abiotic variables in the model (the biological oxygen demand, which is an indicator of available organic matter) seemed to have an effect on the total viable counts. The behavior of these bacterial groups, measured during 1980-1982 and 1984-1986, shows that demographic and ecological laws founded on the observation of other organisms also apply to heterotrophic bacteria. A population, such as the fecal coliforms in the present study, has a limited ecological amplitude and is then more likely to react to environmental variables such as irradiance, pH, and phytoplanktonic metabolic products, whose bactericidal action is highest during the summer months and lowest during winter. On the other hand, a community such as that detected by the total viable counts of the present study is composed of many species and thus has a larger ecological amplitude. This makes it easier for the species to occupy the various available habitats and to maintain themselves through ecological succession and endogenous rhythms.

14.
Biol Cell ; 78(1-2): 111-21, 1993.
Artigo em Inglês | MEDLINE | ID: mdl-8220221

RESUMO

Microorganisms (unicellular algae, bacteria) constitute fundamental compartments of aquatic ecosystems because of their high concentrations and activities. The evaluation and understanding of their behavior and role raise different problems for which traditional methodologies are often inadequate, whether they refer to global or classical microscopic analyses. Flow cytometry (FCM) has been recently used to study microorganisms in aquatic environments. Although this technology is still applied on a limited scale in our field, a large number of works has been done showing that FCM seems to be a promising tool for aquatic microbial ecology. This paper summarizes, from the literature produced during the last decade and with original data obtained in our laboratory, the main questions related to the cell identification, the evaluation of cell viability, biomasses and productions and the measurements of bacterial and phytoplanktonic activities. The representatives of sampling and observation scales is also discussed within the framework of the FCM measurements.


Assuntos
Citometria de Fluxo/métodos , Biologia Marinha/métodos , Microbiologia da Água , Bactérias/classificação , Bactérias/isolamento & purificação , DNA Bacteriano/análise , Ecologia , Corantes Fluorescentes , França , Grécia , Indonésia , Mar Mediterrâneo , Fitoplâncton/classificação , Fitoplâncton/isolamento & purificação , Salmonella typhimurium/química , Salmonella typhimurium/citologia , Salmonella typhimurium/isolamento & purificação , Especificidade da Espécie , Tunísia , Poluição da Água/análise
15.
Microb Ecol ; 12(4): 355-79, 1986 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24212926

RESUMO

The process of wastewater treatment was studied by modeling the relationships between physical, chemical, and biological (bacteria, phytoplankton, zooplankton) components of the sewage treatment lagoons of an urban wastewater center, based upon a two-year sampling program. The models of interactions between variables were tested by path analysis. The path coefficients were computed from the results of ridge regression, instead of linear multiple regression. The results show that fecal coliforms were effectively controlled by the environmental variables included in the model, which have a cyclic seasonal behavior. This control grew stronger with distance from the input (R (2)=0.71) to the output (R (2)=0.88) of the treatment plant, resulting in effective elimination of most enteric bacteria. Simultaneously, the ecosystem's community of aerobic heterotrophic bacteria became more independent from the model's predictive variables, with increased distance from the sewage input, thus demonstrating its maturation as an autonomous community in the lagoon ecosystem. Consequences of modeling are discussed, with respect to the understanding of biological wastewater treatment mechanisms and ecosystem dynamics and to plant management.

16.
Appl Environ Microbiol ; 48(3): 586-93, 1984 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-6497372

RESUMO

The spatio-temporal dynamics of pollution-indicator bacteria and aerobic heterotrophic bacteria were studied in the sewage treatment lagoons of an urban wastewater center after 26 months of biweekly sampling at eight stations in these lagoons. Robust statistical methods of time-series analysis were used to study successional steps (through chronological clustering) and rhythmic behavior through time (through contingency periodogram). The aerobic heterotrophic bacterial community showed two types of temporal evolution: in the first four stations, it seems mainly controlled by the nutrient support capacity of the sewage input, whereas in the remaining part of the lagoon, it seems likely that the pollution-indicator bacteria are gradually replaced by other bacterial types that are better adapted to this environment. On the other hand, the pollution-indicator bacteria showed an annual cycle which increased in amplitude at distances further from the wastewater source. The main events in this cycle were produced simultaneously at all stations, indicating control of these bacterial populations by climatic factors, which act through physical and chemical factors, and also through other biological components of this ecosystem (phytoplankton and zooplankton). Finally, we use results from this study to suggest a modified design for a future study program.


Assuntos
Bactérias/crescimento & desenvolvimento , Esgotos , Microbiologia da Água , Bactérias/metabolismo , Bactérias Aeróbias/crescimento & desenvolvimento , Bactérias Aeróbias/metabolismo , Evolução Biológica , Ecologia , Fezes/microbiologia , Periodicidade , Estatística como Assunto , Fatores de Tempo
17.
Appl Environ Microbiol ; 63(7): 2686-94, 1997 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16535646

RESUMO

In this study, we have used different fluorescent dyes and techniques to characterize the heterogeneity and changes of the physiological states encountered by the marine bacterium Deleya aquamarina during a 92-day starvation survival experiment at 20 and 5(deg)C. Changes of physiological states were investigated on a single-cell basis by flow cytometry and epifluorescence microscopy in conjunction with fluorescent dyes specific for various cellular functions and constituents. Heterogeneities within populations with regard to functions (respiration, substrate responsiveness, enzymatic activity, and cytoplasmic membrane permeability), constituent (DNA), and cell volume (light scatter) were compared to the evolution of viable plate counts (CFU). At 20(deg)C, CFU changes were divided into three stages corresponding to stability up to day 13 followed by a rapid drop between days 13 and 42 and then by stabilization at a level of 10 to 20% during the remaining survival period. Most of the cellular fractions showing a metabolic activity were close to the evolution of the culturable cells, suggesting the absence of viable but nonculturable cells. On the other hand, cells with selective cytoplasmic membrane permeability but without any metabolic activity were observed, and this stage was followed by DNA alteration occurring at different rates after the loss of membrane cytoplasmic permeability. We observed a greater maintenance of culturability, physiological functions, DNA, and cellular volume at the lower temperature. These results have different ecological implications from both methodological and conceptual viewpoints.

18.
Cytometry ; 44(3): 164-72, 2001 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-11429766

RESUMO

BACKGROUND: The present review is based on the identification of four major environmental crises that have been approached from a biological oceanographic viewpoint. These crises are the release of contaminants in near shore marine waters, the collapse of marine resources that were renewable until recently, the loss of biodiversity, and global climate change METHODS: The review examines the contribution of cytometry-based biological oceanography to the resolution of the four environmental crises. Using a database of 302 papers, flow cytometric (FCM) studies in biological oceanography over the 1989--1999 decade are examined. Future biological oceanographic applications of FCM are discussed. RESULTS: Most of the published FCM oceanographic studies focus on phytoplankton and bacterioplankton. Analysis of our 1989-1999 database shows the predominance of studies dedicated to phytoplankton (77%), followed by heterotrophic bacteria (21%). The latter progressively increased over the last decade, together with the improved understanding of the biogeochemical and trophic roles of marine bacteria. Most studies on these two microorganisms were conducted in vitro until 1996, after which the trend reversed in favor of in situ research. The most investigated areas were those with major international sampling efforts, related to the changing climate. Concerning environmental topics, 62% of papers on phytoplankton and bacterioplankton focused on the structure of microbial communities and fluxes (e.g., production, grazing); this provides the basis for biological oceanographic studies on resources and climate change. CONCLUSIONS: Future progress in the biological oceanographic use of FCM will likely fall into two categories, i.e., applications where FCM will be combined with the development of other methods and those where FCM will be the main analytical tool. It is expected that FCM and other cytometric approaches will improve the ability of biological oceanography to address the major environmental challenges that are confronting human societies.


Assuntos
Citometria de Fluxo/tendências , Pesquisa/tendências , Animais , Meio Ambiente , Previsões , Humanos , Oceanos e Mares
19.
Cytometry ; 44(3): 188-94, 2001 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-11429769

RESUMO

BACKGROUND: In the past decade, flow cytometry has become a useful and precise alternative to microscopic bacterial cell counts in aquatic samples. However, little evidence of its usefulness for the evaluation of bacterial biovolumes has emerged in from the literature. METHODS: The light scattering and cell volume of starved bacterial strains and natural bacterial communities from the Black Sea were measured by flow cytometry and epifluorescence microscopy, respectively, in order to establish a relationship between light scattering and cell volume. RESULTS: With the arc-lamp flow cytometer, forward angle light scatter (FALS) was related to cell size in both the starved strains and natural communities, although regression parameters differed. We tested the predictive capacity of the FALS verous cell size relationship in a bacterial community from the North Sea. That analysis showed that a reliable bacterial biovolume prediction of a natural bacterial community can be obtained from FALS using a model generated from natural bacterial community data. CONCLUSIONS: Bacterial biovolume is likely to be related to FALS measurements. It is possible to establish a generally applicable model derived from natural bacterial assemblages for flow cytometric estimation of bacterial biovolumes by light scatter.


Assuntos
Citometria de Fluxo/métodos , Transdução de Sinal Luminoso , Aeromonas hydrophila/crescimento & desenvolvimento , Contagem de Colônia Microbiana , Meios de Cultura , Enterobacter cloacae/crescimento & desenvolvimento , Escherichia coli/crescimento & desenvolvimento , Gammaproteobacteria/crescimento & desenvolvimento , Luz , Pseudomonas putida/crescimento & desenvolvimento , Salmonella typhimurium/crescimento & desenvolvimento , Vibrio/crescimento & desenvolvimento
20.
FEMS Microbiol Ecol ; 34(3): 243-253, 2001 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-11137604

RESUMO

A mesocosm experiment was performed to study the influence of nutrients on activity and diversity of bacterial assemblages from the Mediterranean Sea. Changes in the diversity of the predominant bacterial populations were monitored by DGGE fingerprinting of PCR products derived from 16S rRNA encoding genes. Fluctuations in the diversity of the most active populations was inferred by performing the DGGE fingerprinting on the basis of the cellular rRNA after reverse transcription and PCR amplification. DNA-derived DGGE patterns obtained from duplicate control and nutrient-enriched mesocosms showed differences in the development of the bacterial communities between control and nutrient-enriched experimental mesocosms. Multidimensional scaling analysis of the DNA-derived DGGE fingerprints indicated that duplicate treatments were reproducible. DNA- and RNA-derived DGGE fingerprints of bacterial assemblages changed over time, showing that the composition of the bacterial assemblages, as well as the most active bacterial populations changed during different phases of the incubation. Sequences of predominant DGGE bands in RNA-derived patterns were similar to 16S rRNA gene sequences of members of the alpha-, gamma- and delta-Proteobacteria and of the Cytophaga-Flavobacterium-Bacteroides phylum (CFB). Bands corresponding to Ruegeria-like bacteria and members of the CFB became especially dominant during the course of incubation, suggesting that these populations were important contributors to bacterial production and activity in the post-grazing phase of the experiment.

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