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1.
J Biol Chem ; 291(3): 1411-26, 2016 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-26553876

RESUMO

Phospholipids (PLs) are unusual signaling hormones sensed by the nuclear receptor liver receptor homolog-1 (LRH-1), which has evolved a novel allosteric pathway to support appropriate interaction with co-regulators depending on ligand status. LRH-1 plays an important role in controlling lipid and cholesterol homeostasis and is a potential target for the treatment of metabolic and neoplastic diseases. Although the prospect of modulating LRH-1 via small molecules is exciting, the molecular mechanism linking PL structure to transcriptional co-regulator preference is unknown. Previous studies showed that binding to an activating PL ligand, such as dilauroylphosphatidylcholine, favors LRH-1's interaction with transcriptional co-activators to up-regulate gene expression. Both crystallographic and solution-based structural studies showed that dilauroylphosphatidylcholine binding drives unanticipated structural fluctuations outside of the canonical activation surface in an alternate activation function (AF) region, encompassing the ß-sheet-H6 region of the protein. However, the mechanism by which dynamics in the alternate AF influences co-regulator selectivity remains elusive. Here, we pair x-ray crystallography with molecular modeling to identify an unexpected allosteric network that traverses the protein ligand binding pocket and links these two elements to dictate selectivity. We show that communication between the alternate AF region and classical AF2 is correlated with the strength of the co-regulator interaction. This work offers the first glimpse into the conformational dynamics that drive this unusual PL-mediated nuclear hormone receptor activation.


Assuntos
Modelos Moleculares , Coativador 2 de Receptor Nuclear/metabolismo , Fosfolipídeos/metabolismo , Receptores Citoplasmáticos e Nucleares/metabolismo , 4-Cloro-7-nitrobenzofurazano/análogos & derivados , 4-Cloro-7-nitrobenzofurazano/química , 4-Cloro-7-nitrobenzofurazano/metabolismo , Regulação Alostérica , Apoproteínas , Sítios de Ligação , Bases de Dados de Proteínas , Corantes Fluorescentes/química , Corantes Fluorescentes/metabolismo , Genes Reporter , Células HEK293 , Humanos , Ligantes , Simulação de Dinâmica Molecular , Mutação , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/genética , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Fosfatidiletanolaminas/química , Fosfatidiletanolaminas/metabolismo , Fosfolipídeos/química , Conformação Proteica , Domínios e Motivos de Interação entre Proteínas , Receptores Citoplasmáticos e Nucleares/química , Receptores Citoplasmáticos e Nucleares/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Ativação Transcricional
2.
Angew Chem Int Ed Engl ; 56(20): 5480-5484, 2017 05 08.
Artigo em Inglês | MEDLINE | ID: mdl-28407400

RESUMO

Spiroketals are structural motifs found in many biologically active natural products, which has stimulated considerable efforts toward their synthesis and interest in their use as drug lead compounds. Despite this, the use of spiroketals, and especially bisbenzanulated spiroketals, in a structure-based drug discovery setting has not been convincingly demonstrated. Herein, we report the rational design of a bisbenzannulated spiroketal that potently binds to the retinoid X receptor (RXR) thereby inducing partial co-activator recruitment. We solved the crystal structure of the spiroketal-hRXRα-TIF2 ternary complex, and identified a canonical allosteric mechanism as a possible explanation for the partial agonist behavior of our spiroketal. Our co-crystal structure, the first of a designed spiroketal-protein complex, suggests that spiroketals can be designed to selectively target other nuclear receptor subtypes.


Assuntos
Furanos/química , Coativador 2 de Receptor Nuclear/química , Receptor X Retinoide alfa/química , Compostos de Espiro/química , Cristalografia por Raios X , Humanos , Modelos Moleculares , Estrutura Molecular
3.
J Biol Chem ; 289(2): 814-26, 2014 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-24187139

RESUMO

Retinoid X receptors (RXRs) are obligate partners for several other nuclear receptors, and they play a key role in several signaling processes. Despite being a promiscuous heterodimer partner, this nuclear receptor is a target of therapeutic intervention through activation using selective RXR agonists (rexinoids). Agonist binding to RXR initiates a large conformational change in the receptor that allows for coactivator recruitment to its surface and enhanced transcription. Here we reveal the structural and dynamical changes produced when a coactivator peptide binds to the human RXRα ligand binding domain containing two clinically relevant rexinoids, Targretin and 9-cis-UAB30. Our results show that the structural changes are very similar for each rexinoid and similar to those for the pan-agonist 9-cis-retinoic acid. The four structural changes involve key residues on helix 3, helix 4, and helix 11 that move from a solvent-exposed environment to one that interacts extensively with helix 12. Hydrogen-deuterium exchange mass spectrometry reveals that the dynamics of helices 3, 11, and 12 are significantly decreased when the two rexinoids are bound to the receptor. When the pan-agonist 9-cis-retinoic acid is bound to the receptor, only the dynamics of helices 3 and 11 are reduced. The four structural changes are conserved in all x-ray structures of the RXR ligand-binding domain in the presence of agonist and coactivator peptide. They serve as hallmarks for how RXR changes conformation and dynamics in the presence of agonist and coactivator to initiate signaling.


Assuntos
Ácidos Graxos Insaturados/metabolismo , Naftalenos/metabolismo , Coativador 2 de Receptor Nuclear/metabolismo , Receptor X Retinoide alfa/metabolismo , Tetra-Hidronaftalenos/metabolismo , Alitretinoína , Sequência de Aminoácidos , Bexaroteno , Sítios de Ligação , Cristalografia por Raios X , Ácidos Graxos Insaturados/química , Humanos , Ligantes , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Naftalenos/química , Coativador 2 de Receptor Nuclear/química , Ligação Proteica , Conformação Proteica , Multimerização Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Receptor X Retinoide alfa/química , Tetra-Hidronaftalenos/química , Tretinoína/química , Tretinoína/metabolismo
4.
J Med Genet ; 51(6): 388-94, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24671081

RESUMO

BACKGROUND: The combination of palmoplantar keratoderma and woolly hair is uncommon and reported as part of Naxos and Carvajal syndromes, both caused by mutations in desmosomal proteins and associated with cardiomyopathy. We describe two large consanguineous families with autosomal-recessive palmoplantar keratoderma and woolly hair, without cardiomyopathy and with no mutations in any known culprit gene. The aim of this study was to find the mutated gene in these families. METHODS AND RESULTS: Using whole-exome sequencing, we identified a homozygous missense c.2009C>T mutation in KANK2 in the patients (p.Ala670Val). KANK2 encodes the steroid receptor coactivator (SRC)-interacting protein (SIP), an ankyrin repeat containing protein, which sequesters SRCs in the cytoplasm and controls transcription activation of steroid receptors, among others, also of the vitamin D receptor (VDR). The mutation in KANK2 is predicted to abolish the sequestering abilities of SIP. Indeed, vitamin D-induced transactivation was increased in patient's keratinocytes. Furthermore, SRC-2 and SRC-3, coactivators of VDR and important components of epidermal differentiation, are localised to the nucleus of epidermal basal cells in patients, in contrast to the cytoplasmic distribution in the heterozygous control. CONCLUSIONS: These findings provide evidence that keratoderma and woolly hair can be caused by a non-desmosomal mechanism and further underline the importance of VDR for normal hair and skin phenotypes.


Assuntos
Proteínas de Transporte/genética , Doenças do Cabelo/congênito , Ceratodermia Palmar e Plantar/genética , Mutação , Proteínas Supressoras de Tumor/genética , Repetição de Anquirina/genética , Proteínas Reguladoras de Apoptose , Biópsia por Agulha , Proteínas de Transporte/química , Simulação por Computador , Análise Mutacional de DNA , Feminino , Doenças do Cabelo/genética , Humanos , Espaço Intracelular , Queratinócitos , Masculino , Coativador 2 de Receptor Nuclear/química , Coativador 3 de Receptor Nuclear/química , Linhagem , Receptores de Esteroides , Pele/citologia , Pele/patologia , Proteínas Supressoras de Tumor/química
5.
Int J Mol Sci ; 15(6): 11100-10, 2014 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-24950180

RESUMO

A common feature of nuclear receptors (NRs) is the transformation of external cell signals into specific transcriptions of the signal molecule. Signal molecules function as ligands for NRs and, after their uptake, activated NRs form homo- or heterodimers at promoter recognition sequences of the specific genes in the nucleus. Another common feature of NRs is their dependence on coactivators, which bridge the basic transcriptional machinery and other cofactors to the target genes, in order to initiate transcription and to unwind histone-bound DNA for exposing additional promoter recognition sites via their histone acetyltransferase (HAT) function. In this review, we focus on our recent findings related to the recruitment of steroid receptor coactivator 1 (SRC1/NCoA1) by the estrogen receptor-α (ERα) and by the arylhydrocarbon receptor/arylhydrocarbon receptor nuclear translocator 1 (AhR/ARNT1) complex. We also describe the extension of our previously published findings regarding the binding between ARNT1.1 exon16 and SRC1e exon 21, via in silico analyses of androgen receptor (AR) NH2-carboxyl-terminal interactions, the results of which were verified by in vitro experiments. Based on these data, we suggest a newly derived tentative binding site of nuclear coactivator 2/glucocorticoid receptor interacting protein-1/transcriptional intermediary factor 2 (NCOA-2/ GRIP-1/TIF-2) for ARNT1.1 exon 16. Furthermore, results obtained by immunoprecipitation have revealed a second leucine-rich binding site for hARNT1.1 exon 16 in SRC1e exon 21 (LSSTDLL). Finally, we discuss the role of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) as an endocrine disruptor for estrogen related transcription.


Assuntos
Translocador Nuclear Receptor Aril Hidrocarboneto/metabolismo , Receptores de Hidrocarboneto Arílico/metabolismo , Translocador Nuclear Receptor Aril Hidrocarboneto/química , Translocador Nuclear Receptor Aril Hidrocarboneto/genética , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Disruptores Endócrinos/química , Disruptores Endócrinos/metabolismo , Humanos , Proteínas do Tecido Nervoso/química , Proteínas do Tecido Nervoso/metabolismo , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Domínios e Motivos de Interação entre Proteínas , Receptores de Hidrocarboneto Arílico/química , Receptores de Hidrocarboneto Arílico/genética , Receptores de Estrogênio/química , Receptores de Estrogênio/metabolismo
6.
Biochemistry ; 52(24): 4193-203, 2013 Jun 18.
Artigo em Inglês | MEDLINE | ID: mdl-23713684

RESUMO

A high-throughput screening campaign was conducted to identify small molecules with the ability to inhibit the interaction between the vitamin D receptor (VDR) and steroid receptor coactivator 2. These inhibitors represent novel molecular probes for modulating gene regulation mediated by VDR. Peroxisome proliferator-activated receptor (PPAR) δ agonist GW0742 was among the identified VDR-coactivator inhibitors and has been characterized herein as a pan nuclear receptor antagonist at concentrations of > 12.1 µM. The highest antagonist activity for GW0742 was found for VDR and the androgen receptor. Surprisingly, GW0742 behaved as a PPAR agonist and antagonist, activating transcription at lower concentrations and inhibiting this effect at higher concentrations. A unique spectroscopic property of GW0742 was identified as well. In the presence of rhodamine-derived molecules, GW0742 increased the fluorescence intensity and level of fluorescence polarization at an excitation wavelength of 595 nm and an emission wavelength of 615 nm in a dose-dependent manner. The GW0742-inhibited NR-coactivator binding resulted in a reduced level of expression of five different NR target genes in LNCaP cells in the presence of agonist. Especially VDR target genes CYP24A1, IGFBP-3, and TRPV6 were negatively regulated by GW0742. GW0742 is the first VDR ligand inhibitor lacking the secosteroid structure of VDR ligand antagonists. Nevertheless, the VDR-meditated downstream process of cell differentiation was antagonized by GW0742 in HL-60 cells that were pretreated with the endogenous VDR agonist 1,25-dihydroxyvitamin D3.


Assuntos
Núcleo Celular/metabolismo , Coativador 2 de Receptor Nuclear/química , PPAR delta/agonistas , Receptores de Calcitriol/química , Tiazóis/farmacologia , Linhagem Celular Tumoral , DNA/química , Relação Dose-Resposta a Droga , Células HEK293 , Células HL-60 , Humanos , Concentração Inibidora 50 , Ligantes , Ligação Proteica , Rodaminas/química , Espectrofotometria/métodos
7.
J Biol Chem ; 287(53): 44546-60, 2012 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-23132854

RESUMO

Control of gene transcription by glucocorticoid receptors (GRs) is important for many physiological processes. Like other steroid hormone receptors, the regulation of target genes by GR is mediated by two transactivation domains: activation function 1 (AF1) in the N-terminal domain and AF2 in the C-terminal ligand-binding domain (LBD). Full receptor activity requires both AF1 and -2 plus assorted coregulatory proteins. Crystal structures of the ligand-bound LBD have provided insight regarding how AF2 interacts with specific coactivators. However, despite its being the major activation domain of GRs, knowledge of AF1 structure/function has languished. This is mainly because of the highly disorganized structure of the GR N-terminal domain. This lack of AF1 structure is shared by all members of the steroid/nuclear receptor superfamily for which it has been examined and AF1 is thought to allow productive interactions with assorted cofactors via protein-induced changes in secondary/tertiary structures. To date, there are no reports of a classical coactivator altering the secondary/tertiary structure of the GR AF1 domain. Earlier, we reported an N-terminal fragment of the p160 coactivator TIF2, called TIF2.0, that binds the GR N-terminal domain and alters GR transcriptional activity. We therefore proposed that TIF2.0 binding to AF1 changes both its conformation and transcriptional activity. We now report that TIF2.0 interacts with the GR AF1 domain to increase the amount of α-helical structure in the complex. Furthermore, TIF2 coactivator activity is observed in the absence of the GR LBD in a manner that requires the AF1 domain. This contrasts with previous models where TIF2 receptor interaction domains binding to GR LBD somehow alter AF1 conformation. Our results establish for the first time that coactivators can modify the structure of the AF1 domain directly via the binding of a second region of the coactivator and suggest a molecular explanation for how coactivators increase the transcriptional activity of GR-agonist complexes.


Assuntos
Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Receptores de Glucocorticoides/química , Receptores de Glucocorticoides/metabolismo , Sequência de Aminoácidos , Animais , Linhagem Celular , Humanos , Cinética , Dados de Sequência Molecular , Coativador 2 de Receptor Nuclear/genética , Ligação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Ratos , Receptores de Glucocorticoides/genética , Ativação Transcricional
8.
Artigo em Inglês | MEDLINE | ID: mdl-23989146

RESUMO

Steroid receptors (SRs) are a closely related family of ligand-dependent nuclear receptors that mediate the transcription of genes critical for development, reproduction and immunity. SR dysregulation has been implicated in cancer, inflammatory diseases and metabolic disorders. SRs bind their cognate hormone ligand with exquisite specificity, offering a unique system to study the evolution of molecular recognition. The SR family evolved from an estrogen-sensitive ancestor and diverged to become sensitive to progestagens, corticoids and, most recently, androgens. To understand the structural mechanisms driving the evolution of androgen responsiveness, the ancestral androgen receptor (ancAR1) was crystallized in complex with 5α-dihydrotestosterone (DHT) and a fragment of the transcriptional mediator/intermediary factor 2 (Tif2). Crystals diffracted to 2.1 Šresolution and the resulting structure will permit a direct comparison with its progestagen-sensitive ancestor, ancestral steroid receptor 2 (AncSR2).


Assuntos
Di-Hidrotestosterona/química , Coativador 2 de Receptor Nuclear/química , Receptores Androgênicos/química , Sequência de Aminoácidos , Sítios de Ligação , Cristalografia por Raios X , Di-Hidrotestosterona/metabolismo , Escherichia coli/genética , Evolução Molecular , Expressão Gênica , Humanos , Dados de Sequência Molecular , Coativador 2 de Receptor Nuclear/genética , Coativador 2 de Receptor Nuclear/metabolismo , Ligação Proteica , Estrutura Secundária de Proteína , Receptores Androgênicos/genética , Receptores Androgênicos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
9.
Biochemistry ; 50(1): 93-105, 2011 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-21049972

RESUMO

Retinoid X receptors (RXRs) are ligand-dependent nuclear receptors, which are activated by the potent agonist 9-cis-retinoic acid (9cRA). 9cRA binds to the ligand binding domain (LBD) of RXRs and recruits coactivator proteins for gene transcription. Using isothermal titration calorimetry, the binding of a 13-mer coactivator peptide, GRIP-1, to the hRXRα-LBD homodimer complex containing 9cRA (hRXRα-LBD:9cRA:GRIP-1) is reported between 20 and 37 °C. ΔG is temperature independent (-8.5 kcal/mol), and GRIP-1 binding is driven by ΔH (-9.2 kcal/mol) at 25 °C. ΔC(p) is large and negative (-401 cal mol(-1) K(-1)). The crystal structure of hRXRα-LBD:9cRA:GRIP-1 is reported at 2.05 Å. When the structures of hRXRα-LBD:9cRA:GRIP-1 and hRXRα-LBD:9cRA ( 1FBY ) homodimers are compared, E453 and E456 on helix 12 bury and form ionic interactions with GRIP-1. R302 on helix 4 realigns to form new salt bridges to both E453 and E456. F277 (helix 3), F437 (helix 11), and F450 (helix 12) move toward the hydrophobic interior. The changes in the near-UV spectrum at 260 nm of the hRXRα-LBD:9cRA:GRIP-1 support this structural change. Helix 11 tilts toward helix 12 by ≈1 Å, modifying the ring conformation of 9cRA. Hydrogen-deuterium exchange mass spectroscopy indicates GRIP-1 binding to hRXRα-LBD:9cRA significantly decreases the exchange rates for peptides containing helices 3 (F277), 4 (R302), 11 (F437), and 12 (E453, E456). The structural changes and loss of dynamics of the GRIP-1-bound structure are used to interpret the energetics of coactivator peptide binding to the agonist-bound hRXRα-LBD.


Assuntos
Coativador 2 de Receptor Nuclear/metabolismo , Receptor X Retinoide alfa/metabolismo , Tretinoína/metabolismo , Alitretinoína , Sequência de Aminoácidos , Cristalografia por Raios X , Humanos , Ligantes , Modelos Moleculares , Dados de Sequência Molecular , Coativador 2 de Receptor Nuclear/química , Ligação Proteica , Multimerização Proteica , Estrutura Terciária de Proteína , Receptor X Retinoide alfa/química , Espectrofotometria Ultravioleta , Termodinâmica , Tretinoína/química
10.
J Mol Biol ; 433(9): 166899, 2021 04 30.
Artigo em Inglês | MEDLINE | ID: mdl-33647291

RESUMO

Retinoic acid receptors (RARs) and retinoid X receptors (RXRs) form heterodimers that activate target gene transcription by recruiting co-activator complexes in response to ligand binding. The nuclear receptor (NR) co-activator TIF2 mediates this recruitment by interacting with the ligand-binding domain (LBD) of NRs trough the nuclear receptor interaction domain (TIF2NRID) containing three highly conserved α-helical LxxLL motifs (NR-boxes). The precise binding mode of this domain to RXR/RAR is not clear due to the disordered nature of TIF2. Here we present the structural characterization of TIF2NRID by integrating several experimental (NMR, SAXS, Far-UV CD, SEC-MALS) and computational data. Collectively, the data are in agreement with a largely disordered protein with partially structured regions, including the NR-boxes and their flanking regions, which are evolutionary conserved. NMR and X-ray crystallographic data on TIF2NRID in complex with RXR/RAR reveal a multisite binding of the three NR-boxes as well as an active role of their flanking regions in the interaction.


Assuntos
Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Receptores do Ácido Retinoico/química , Receptores do Ácido Retinoico/metabolismo , Receptores X de Retinoides/química , Receptores X de Retinoides/metabolismo , Sequência de Aminoácidos , Animais , Sítios de Ligação , Cristalografia por Raios X , Polarização de Fluorescência , Humanos , Proteínas Intrinsicamente Desordenadas/química , Proteínas Intrinsicamente Desordenadas/metabolismo , Ligantes , Camundongos , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica , Multimerização Proteica , Estrutura Secundária de Proteína
11.
Sci Rep ; 11(1): 12515, 2021 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-34131228

RESUMO

The glucocorticoid receptor is a key regulator of essential physiological processes, which under the control of the Hsp90 chaperone machinery, binds to steroid hormones and steroid-like molecules and in a rather complicated and elusive response, regulates a set of glucocorticoid responsive genes. We here examine a human glucocorticoid receptor variant, harboring a point mutation in the last C-terminal residues, L773P, that was associated to Primary Generalized Glucocorticoid Resistance, a condition originating from decreased affinity to hormone, impairing one or multiple aspects of GR action. Using in vitro and in silico methods, we assign the conformational consequences of this mutation to particular GR elements and report on the altered receptor properties regarding its binding to dexamethasone, a NCOA-2 coactivator-derived peptide, DNA, and importantly, its interaction with the chaperone machinery of Hsp90.


Assuntos
Glucocorticoides/genética , Proteínas de Choque Térmico HSP90/genética , Conformação Molecular/efeitos dos fármacos , Receptores de Glucocorticoides/genética , Animais , DNA/genética , Dexametasona/farmacologia , Glucocorticoides/química , Proteínas de Choque Térmico HSP90/ultraestrutura , Humanos , Erros Inatos do Metabolismo/genética , Erros Inatos do Metabolismo/patologia , Chaperonas Moleculares/genética , Chaperonas Moleculares/ultraestrutura , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/genética , Peptídeos/genética , Mutação Puntual/genética , Ligação Proteica/genética , Receptores de Glucocorticoides/deficiência , Receptores de Glucocorticoides/ultraestrutura
12.
Nucleic Acids Res ; 36(6): 1847-60, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18267973

RESUMO

Transcriptional activation involves the ordered recruitment of coactivators via direct interactions between distinct binding domains and recognition motifs. The p160/SRC/NCoA coactivator family comprises three members (NCoA-1, -2 and -3), which are organized in multiprotein coactivator complexes. We had identified the PAS-B domain of NCoA-1 as an LXXLL motif binding domain. Here we show that NCoA family members are able to interact with other full-length NCoA proteins via their PAS-B domain and they specifically interact with the CBP-interaction domain (CID/AD1) of NCoA-1. Peptide competition, binding experiments and mutagenesis of LXXLL motifs point at distinct binding motif specificities of the NCoA PAS-B domains. NMR studies of different NCoA-1-PAS-B/LXXLL peptide complexes revealed similar although not identical binding sites for the CID/AD1 and STAT6 transactivation domain LXXLL motifs. In mechanistic studies, we found that overexpression of the PAS-B domain is able to disturb the binding of NCoA-1 to CBP in cells and that a CID/AD1 peptide competes with STAT6 for NCoA-1 in vitro. Moreover, the expression of an endogenous androgen receptor target gene is affected by the overexpression of the NCoA-1 or NCoA-3 PAS-B domains. Our study discloses a new, complementary mechanism for the current model of coactivator recruitment to target gene promoters.


Assuntos
Histona Acetiltransferases/química , Coativador 2 de Receptor Nuclear/química , Transativadores/química , Fatores de Transcrição/química , Ativação Transcricional , Motivos de Aminoácidos , Ligação Competitiva , Proteína de Ligação a CREB/metabolismo , Linhagem Celular , Histona Acetiltransferases/metabolismo , Humanos , Coativador 1 de Receptor Nuclear , Coativador 2 de Receptor Nuclear/metabolismo , Coativador 3 de Receptor Nuclear , Domínios e Motivos de Interação entre Proteínas , Receptores Citoplasmáticos e Nucleares/metabolismo , Fator de Transcrição STAT6/metabolismo , Transativadores/metabolismo , Fatores de Transcrição/metabolismo
13.
Nucleic Acids Res ; 35(7): 2269-82, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17389641

RESUMO

Orphan nuclear receptor TR2 is a preadipocyte proliferator. Knockdown of TR2 in 3T3-L1 preadipocytes reduced their proliferation efficiency, whereas specific elevation of TR2 in these cells facilitated their proliferation. All-trans retinoic acid (RA) stimulates cellular proliferation in 3T3-L1 preadipocytes by activating TR2 through an IR0-type RA response element, which further activates c-Myc expression. In post-differentiated adipocytes, RA becomes a repressive signal for TR2 and rapidly down-regulates its expression. The biphasic effect of RA on TR2 expression in 3T3-L1 is mediated by differential RA-dependent coregulator recruitment to the receptor/Glucocorticoid Receptor-Interacting Protein 1 (GRIP1) complex that binds IR0 on the TR2 promoter. RA induces the recruitment of histone acetyl transferase-containing/GRIP1/p300/CBP-associated factor (PCAF) complex to the TR2 promoter in undifferentiated cells, whereas it triggers recruitment of histone deacetylase-containing/GRIP1/receptor-interacting protein 140 (RIP140) complex in differentiated cells. GRIP1 directly interacts with RIP140 through its carboxyl terminal AD2 domain. GRIP1 interacts with PCAF and RIP140 directly and differentially, functioning as a platform molecule to mediate differential RA-induced coregulator recruitment to TR2 promoter target. This results in a biphasic effect of RA on the expression of TR2 in undifferentiated and differentiated cells, which is required for RA-stimulated preadipocyte proliferation.


Assuntos
Adipócitos/metabolismo , Receptores dos Hormônios Tireóideos/metabolismo , Células-Tronco/metabolismo , Fatores de Transcrição/metabolismo , Tretinoína/farmacologia , Células 3T3-L1 , Proteínas Adaptadoras de Transdução de Sinal/química , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Adipócitos/citologia , Adipócitos/efeitos dos fármacos , Animais , Sítios de Ligação , Proteínas de Ciclo Celular/metabolismo , Diferenciação Celular , Proliferação de Células/efeitos dos fármacos , Histona Acetiltransferases/metabolismo , Camundongos , Proteínas Nucleares/química , Proteínas Nucleares/metabolismo , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Proteína 1 de Interação com Receptor Nuclear , Membro 1 do Grupo C da Subfamília 2 de Receptores Nucleares , Regiões Promotoras Genéticas , Estrutura Terciária de Proteína , Receptores dos Hormônios Tireóideos/antagonistas & inibidores , Receptores dos Hormônios Tireóideos/fisiologia , Proteínas Repressoras/química , Proteínas Repressoras/metabolismo , Células-Tronco/citologia , Células-Tronco/efeitos dos fármacos , Fatores de Transcrição de p300-CBP
14.
J Med Chem ; 51(12): 3349-52, 2008 Jun 26.
Artigo em Inglês | MEDLINE | ID: mdl-18522385

RESUMO

An X-ray crystal structure is reported for the novel enhanced-affinity glucocorticoid agonist fluticasone furoate (FF) in the ligand binding domain of the glucocorticoid receptor. Comparison of this structure with those of dexamethasone and fluticasone propionate shows the 17 alpha furoate ester to occupy more fully the lipophilic 17 alpha pocket on the receptor, which may account for the enhanced glucocorticoid receptor binding of FF.


Assuntos
Androstadienos/química , Receptores de Glucocorticoides/agonistas , Receptores de Glucocorticoides/química , Sítios de Ligação , Cristalografia por Raios X , Humanos , Modelos Moleculares , Coativador 2 de Receptor Nuclear/química , Conformação Proteica
15.
Methods Mol Biol ; 1764: 315-328, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29605924

RESUMO

Purification of proteins containing disordered regions and participating in transient complexes is often challenging because of the small amounts available after purification, their heterogeneity, instability, and/or poor solubility. To circumvent these difficulties, we set up a methodology that enables the production of stable complexes in large amounts for structural and functional studies. In this chapter, we describe the methodology used to establish the best cell culture conditions and buffer compositions to optimize soluble protein production and their stabilization through protein complex formation. Two examples of challenging protein families are described, namely, the human steroid nuclear receptors and the HIV-1 pre-integration complexes.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/isolamento & purificação , Cromatografia de Afinidade/métodos , Integrase de HIV/isolamento & purificação , Coativador 2 de Receptor Nuclear/isolamento & purificação , Domínios e Motivos de Interação entre Proteínas , Receptores Citoplasmáticos e Nucleares/isolamento & purificação , Receptores de Glucocorticoides/isolamento & purificação , Fatores de Transcrição/isolamento & purificação , Proteínas Adaptadoras de Transdução de Sinal/química , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Integrase de HIV/química , Integrase de HIV/metabolismo , Humanos , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Ligação Proteica , Receptores Citoplasmáticos e Nucleares/química , Receptores Citoplasmáticos e Nucleares/metabolismo , Receptores de Glucocorticoides/química , Receptores de Glucocorticoides/metabolismo , Fatores de Transcrição/química , Fatores de Transcrição/metabolismo
16.
PLoS Biol ; 2(9): E274, 2004 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-15328534

RESUMO

Prostate cancer is a leading killer of men in the industrialized world. Underlying this disease is the aberrant action of the androgen receptor (AR). AR is distinguished from other nuclear receptors in that after hormone binding, it preferentially responds to a specialized set of coactivators bearing aromatic-rich motifs, while responding poorly to coactivators bearing the leucine-rich "NR box" motifs favored by other nuclear receptors. Under normal conditions, interactions with these AR-specific coactivators through aromatic-rich motifs underlie targeted gene transcription. However, during prostate cancer, abnormal association with such coactivators, as well as with coactivators containing canonical leucine-rich motifs, promotes disease progression. To understand the paradox of this unusual selectivity, we have derived a complete set of peptide motifs that interact with AR using phage display. Binding affinities were measured for a selected set of these peptides and their interactions with AR determined by X-ray crystallography. Structures of AR in complex with FxxLF, LxxLL, FxxLW, WxxLF, WxxVW, FxxFF, and FxxYF motifs reveal a changing surface of the AR coactivator binding interface that permits accommodation of both AR-specific aromatic-rich motifs and canonical leucine-rich motifs. Induced fit provides perfect mating of the motifs representing the known family of AR coactivators and suggests a framework for the design of AR coactivator antagonists.


Assuntos
Regulação Neoplásica da Expressão Gênica , Peptídeos e Proteínas de Sinalização Intracelular/química , Receptores Androgênicos/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Proteínas de Transporte/química , Cristalografia por Raios X , Proteínas do Citoesqueleto/química , Proteínas de Ligação a DNA/química , Humanos , Cinética , Proteínas com Domínio LIM , Leucina/química , Masculino , Dados de Sequência Molecular , Proteínas do Tecido Nervoso/química , Coativador 2 de Receptor Nuclear/química , Coativadores de Receptor Nuclear , Proteínas Oncogênicas/química , Biblioteca de Peptídeos , Peptídeos/química , Neoplasias da Próstata/metabolismo , Ligação Proteica , Conformação Proteica , Estrutura Secundária de Proteína , Receptores de Estrogênio/química , Receptores de Glucocorticoides/química , Homologia de Sequência de Aminoácidos , Ressonância de Plasmônio de Superfície , Receptores beta dos Hormônios Tireóideos/química , Fatores de Tempo , Fatores de Transcrição/química
17.
Mol Endocrinol ; 20(6): 1276-86, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16322096

RESUMO

In previous studies transcriptional intermediary factor 1alpha (TIF1alpha) was identified as a direct binding partner and potential transcriptional coactivator for nuclear receptors (NRs) but its overexpression inhibited, rather than enhanced, transcriptional activation by NRs. Here we show that TIF1alpha bound to and enhanced the function of the C-terminal activation domain (AD) of coactivator associated arginine methyltransferase 1 (CARM1) and the N-terminal AD of glucocorticoid receptor-interacting protein 1 (GRIP1). Furthermore, although TIF1alpha had little or no NR coactivator activity by itself, it cooperated synergistically with GRIP1 and CARM1 to enhance NR-mediated transcription. Inhibition of endogenous TIF1alpha expression reduced transcriptional activation by the GRIP1 N-terminal domain but not by the CARM1 C-terminal domain, suggesting that TIF1alpha may be more important for mediating the activity of the former than the latter. Reduction of endogenous TIF1alpha levels also compromised the androgen-dependent induction of an endogenous target gene of the androgen receptor. Finally, TIF1alpha formed a ternary complex with the GRIP1 N-terminal and CARM1 C-terminal domains. Thus, we conclude that TIF1alpha cooperates with NR coactivators GRIP1 and CARM1 by forming a stable ternary complex with them and enhancing the AD function of one or both of them.


Assuntos
Proteínas Nucleares/metabolismo , Coativador 2 de Receptor Nuclear/metabolismo , Proteína-Arginina N-Metiltransferases/metabolismo , Fatores de Transcrição/metabolismo , Animais , Sequência de Bases , Proteínas de Transporte/química , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Humanos , Técnicas In Vitro , Modelos Biológicos , Proteínas do Tecido Nervoso/química , Proteínas do Tecido Nervoso/genética , Proteínas do Tecido Nervoso/metabolismo , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/genética , Ligação Proteica , Estrutura Terciária de Proteína , Proteína-Arginina N-Metiltransferases/química , Proteína-Arginina N-Metiltransferases/genética , RNA Interferente Pequeno/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Transdução de Sinais , Ativação Transcricional , Técnicas do Sistema de Duplo-Híbrido
18.
Structure ; 25(10): 1506-1518.e4, 2017 10 03.
Artigo em Inglês | MEDLINE | ID: mdl-28890360

RESUMO

Nuclear receptor (NR) transcription factors bind various coreceptors, small-molecule ligands, DNA response element sequences, and transcriptional coregulator proteins to affect gene transcription. Small-molecule ligands and DNA are known to influence receptor structure, coregulator protein interaction, and function; however, little is known on the mechanism of synergy between ligand and DNA. Using quantitative biochemical, biophysical, and solution structural methods, including 13C-detected nuclear magnetic resonance and hydrogen/deuterium exchange (HDX) mass spectrometry, we show that ligand and DNA cooperatively recruit the intrinsically disordered steroid receptor coactivator-2 (SRC-2/TIF2/GRIP1/NCoA-2) receptor interaction domain to peroxisome proliferator-activated receptor gamma-retinoid X receptor alpha (PPARγ-RXRα) heterodimer and reveal the binding determinants of the complex. Our data reveal a thermodynamic mechanism by which DNA binding propagates a conformational change in PPARγ-RXRα, stabilizes the receptor ligand binding domain dimer interface, and impacts ligand potency and cooperativity in NR coactivator recruitment.


Assuntos
DNA/metabolismo , Complexos Multiproteicos/química , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Sítios de Ligação , Espectroscopia de Ressonância Magnética Nuclear de Carbono-13 , Medição da Troca de Deutério , Regulação da Expressão Gênica , Humanos , Ligantes , PPAR gama/química , PPAR gama/metabolismo , Ligação Proteica , Receptor X Retinoide alfa/química , Receptor X Retinoide alfa/metabolismo
19.
Sci Rep ; 7(1): 12134, 2017 09 21.
Artigo em Inglês | MEDLINE | ID: mdl-28935930

RESUMO

Prion-like behaviour is attracting much attention due to the growing evidences that amyloid-like self-assembly may reach beyond neurodegeneration and be a conserved functional mechanism. The best characterized functional prions correspond to a subset of yeast proteins involved in translation or transcription. Their conformational promiscuity is encoded in Prion Forming Domains (PFDs), usually long and intrinsically disordered protein segments of low complexity. The compositional bias of these regions seems to be important for the transition between soluble and amyloid-like states. We have proposed that the presence of cryptic soft amyloid cores embedded in yeast PFDs can also be important for their assembly and demonstrated their existence and self-propagating abilities. Here, we used an orthogonal approach in the search of human domains that share yeast PFDs compositional bias and exhibit a predicted nucleating core, identifying 535 prion-like candidates. We selected seven proteins involved in transcriptional or translational regulation and associated to disease to characterize the properties of their amyloid cores. All of them self-assemble spontaneously into amyloid-like structures able to propagate their polymeric state. This provides support for the presence of short sequences able to trigger conformational conversion in prion-like human proteins, potentially regulating their functionality.


Assuntos
Amiloide/química , Proteínas Priônicas/química , Sequência de Aminoácidos , RNA Helicases DEAD-box/química , Bases de Dados de Proteínas , Proteínas Fúngicas/química , Humanos , Peptídeos e Proteínas de Sinalização Intracelular/química , Proteínas Intrinsicamente Desordenadas/química , Complexo Mediador/química , Proteínas do Fator Nuclear 90/química , Proteínas Nucleares/química , Coativador 2 de Receptor Nuclear/química , Complexo Repressor Polycomb 1/química , Agregados Proteicos , Domínios Proteicos , Proteínas Tirosina Fosfatases/química , Solubilidade , Antígeno-1 Intracelular de Células T/química , Leveduras/química
20.
Biochem Pharmacol ; 140: 1-7, 2017 09 15.
Artigo em Inglês | MEDLINE | ID: mdl-28390937

RESUMO

Steroid receptor coactivators (SRCs) are essential regulators of nuclear hormone receptor function. SRCs coactivate transcription mediated by hormone stimulation of nuclear receptors and other transcription factors and have essential functions in human physiology and health. The SRCs are over expressed in a number of cancers such as breast, prostate, endometrial and pancreatic cancers where they promote tumor growth, invasion, metastasis and chemo-resistance. With their multiple roles in cancer, the SRCs are promising targets for the development of small molecule agents that can interfere with their function. For instance, perturbing SRC function with small molecule inhibitors and stimulators has been shown to be effective in reducing tumor growth in vivo. These early studies demonstrate that targeting the SRCs might prove effective for cancer treatment and more effort should be made to realize the untapped potential of developing drugs designed to target these coactivators.


Assuntos
Antineoplásicos/uso terapêutico , Desenho de Fármacos , Terapia de Alvo Molecular , Neoplasias Hormônio-Dependentes/tratamento farmacológico , Coativador 1 de Receptor Nuclear/antagonistas & inibidores , Coativador 2 de Receptor Nuclear/antagonistas & inibidores , Coativador 3 de Receptor Nuclear/antagonistas & inibidores , Anti-Inflamatórios/química , Anti-Inflamatórios/farmacologia , Anti-Inflamatórios/uso terapêutico , Anti-Inflamatórios não Esteroides/química , Anti-Inflamatórios não Esteroides/farmacologia , Anti-Inflamatórios não Esteroides/uso terapêutico , Antineoplásicos/química , Antineoplásicos/farmacologia , Resistência a Múltiplos Medicamentos , Resistencia a Medicamentos Antineoplásicos , Humanos , Ligantes , Proteínas de Neoplasias/antagonistas & inibidores , Proteínas de Neoplasias/química , Proteínas de Neoplasias/metabolismo , Neoplasias Hormônio-Dependentes/imunologia , Neoplasias Hormônio-Dependentes/metabolismo , Coativador 1 de Receptor Nuclear/química , Coativador 1 de Receptor Nuclear/metabolismo , Coativador 2 de Receptor Nuclear/química , Coativador 2 de Receptor Nuclear/metabolismo , Coativador 3 de Receptor Nuclear/química , Coativador 3 de Receptor Nuclear/metabolismo , Domínios e Motivos de Interação entre Proteínas
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