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1.
Cell Mol Biol (Noisy-le-grand) ; 67(2): 56-65, 2021 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-34817338

RESUMO

The study presented here aimed to assess the ability of Desulfovibrio fairfieldensis bacteria to adhere to and form biofilm on the structure of titanium used in implants. D. fairfieldensis was found in the periodontal pockets in the oral environment, indicating that these bacteria can colonize the implant-bone interface and consequently cause bone infection and implant corrosion. Plates of implantable titanium, of which surfaces were characterized by scanning electronic microscopy and Raman spectroscopy, were immersed in several suspensions of D. fairfieldensis cells containing potassium nitrate on the one hand, and artificial saliva or a sulfato-reducing bacterial culture medium on the other hand. Following various incubation timepoints bacteria were counted in different media to determine their doubling time and titanium samples are checked for and determination of the total number of adhered bacteria and biofilm formation. Adhesion of D. fairfieldensis on titanium occurs at rates ranging from 2.105 to 4.6.106 bacteria h-1cm-2 in the first 18 h of incubation on both native and implantable titanium samples. Following that time, the increase in cell numbers per h and cm2 is attributed to growth in adhered bacteria. After 30 days of incubation in a nutrient-rich medium, dense biofilms are observed forming on the implant surface where bacteria became embedded in a layer of polymers D. fairfieldensis is able of adhering to an implantable titanium surface in order to form a biofilm. Further studies are still necessary, however, to assess whether this adhesion still occurs in an environment containing saliva or serum proteins that may alter the implant surface.


Assuntos
Aderência Bacteriana/fisiologia , Biofilmes/crescimento & desenvolvimento , Implantes Dentários/microbiologia , Desulfovibrio/fisiologia , Titânio/química , Desulfovibrio/classificação , Desulfovibrio/genética , Desulfovibrio desulfuricans/fisiologia , Desulfovibrio desulfuricans/ultraestrutura , Humanos , Microscopia Eletrônica de Varredura , Filogenia , Projetos Piloto , Porphyromonas/fisiologia , Porphyromonas/ultraestrutura , RNA Ribossômico 16S/genética
3.
Environ Microbiol ; 21(4): 1395-1406, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30807684

RESUMO

Hydrogen sulfide produced by sulfate-reducing microorganisms (SRM) poses significant health and economic risks, particularly during oil recovery. Previous studies identified perchlorate as a specific inhibitor of SRM. However, constant inhibitor addition to natural systems results in new selective pressures. Consequently, we investigated the ability of Desulfovibrio alaskensis G20 to evolve perchlorate resistance. Serial transfers in increasing concentrations of perchlorate led to robust growth in the presence of 100 mM inhibitor. Isolated adapted strains demonstrated a threefold increase in perchlorate resistance compared to the wild-type ancestor. Whole genome sequencing revealed a single base substitution in Dde_2265, the sulfate adenylyltransferase (sat). We purified and biochemically characterized the Sat from both wild-type and adapted strains, and showed that the adapted Sat was approximately threefold more resistant to perchlorate inhibition, mirroring whole cell results. The ability of this mutation to confer resistance across other inhibitors of sulfidogenesis was also assayed. The generalizability of this mutation was confirmed in multiple evolving G20 cultures and in another SRM, D. vulgaris Hildenborough. This work demonstrates that a single nucleotide polymorphism in Sat can have a significant impact on developing perchlorate resistance and emphasizes the value of adaptive laboratory evolution for understanding microbial responses to environmental perturbations.


Assuntos
Adaptação Fisiológica , Desulfovibrio/efeitos dos fármacos , Desulfovibrio/fisiologia , Percloratos/farmacologia , Sulfatos/metabolismo , Desulfovibrio/enzimologia , Desulfovibrio vulgaris/genética , Farmacorresistência Bacteriana/genética , Sulfeto de Hidrogênio , Mutação , Oxirredução , Polimorfismo de Nucleotídeo Único , Sequenciamento Completo do Genoma
4.
Biofouling ; 35(6): 669-683, 2019 07.
Artigo em Inglês | MEDLINE | ID: mdl-31402749

RESUMO

Desulfovibrio alaskensis G20 biofilms were cultivated on 316 steel, 1018 steel, or borosilicate glass under steady-state conditions in electron-acceptor limiting (EAL) and electron-donor limiting (EDL) conditions with lactate and sulfate in a defined medium. Increased corrosion was observed on 1018 steel under EDL conditions compared to 316 steel, and biofilms on 1018 carbon steel under the EDL condition had at least twofold higher corrosion rates compared to the EAL condition. Protecting the 1018 metal coupon from biofilm colonization significantly reduced corrosion, suggesting that the corrosion mechanism was enhanced through attachment between the material and the biofilm. Metabolomic mass spectrometry analyses demonstrated an increase in a flavin-like molecule under the 1018 EDL condition and sulfonates under the 1018 EAL condition. These data indicate the importance of S-cycling under the EAL condition, and that the EDL is associated with increased biocorrosion via indirect extracellular electron transfer mediated by endogenously produced flavin-like molecules.


Assuntos
Biofilmes , Desulfovibrio/fisiologia , Aço/química , Incrustação Biológica , Transporte Biológico , Corrosão , Elétrons , Oxirredução , Sulfatos/metabolismo
5.
J Proteome Res ; 17(9): 3075-3085, 2018 09 07.
Artigo em Inglês | MEDLINE | ID: mdl-30109807

RESUMO

Bottom-up proteomics is increasingly being used to characterize unknown environmental, clinical, and forensic samples. Proteomics-based bacterial identification typically proceeds by tabulating peptide "hits" (i.e., confidently identified peptides) associated with the organisms in a database; those organisms with enough hits are declared present in the sample. This approach has proven to be successful in laboratory studies; however, important research gaps remain. First, the common-practice reliance on unique peptides for identification is susceptible to a phenomenon known as signal erosion. Second, no general guidelines are available for determining how many hits are needed to make a confident identification. These gaps inhibit the transition of this approach to real-world forensic samples where conditions vary and large databases may be needed. In this work, we propose statistical criteria that overcome the problem of signal erosion and can be applied regardless of the sample quality or data analysis pipeline. These criteria are straightforward, producing a p-value on the result of an organism or toxin identification. We test the proposed criteria on 919 LC-MS/MS data sets originating from 2 toxins and 32 bacterial strains acquired using multiple data collection platforms. Results reveal a > 95% correct species-level identification rate, demonstrating the effectiveness and robustness of proteomics-based organism/toxin identification.


Assuntos
Toxinas Bacterianas/isolamento & purificação , Ciências Forenses/métodos , Peptídeos/análise , Proteômica/estatística & dados numéricos , Bacillus/química , Bacillus/patogenicidade , Bacillus/fisiologia , Toxinas Bacterianas/química , Cromatografia Líquida , Clostridium/química , Clostridium/patogenicidade , Clostridium/fisiologia , Interpretação Estatística de Dados , Desulfovibrio/química , Desulfovibrio/patogenicidade , Desulfovibrio/fisiologia , Escherichia/química , Escherichia/patogenicidade , Escherichia/fisiologia , Ciências Forenses/instrumentação , Ciências Forenses/estatística & dados numéricos , Humanos , Peptídeos/química , Probabilidade , Proteômica/métodos , Pseudomonas/química , Pseudomonas/patogenicidade , Pseudomonas/fisiologia , Salmonella/química , Salmonella/patogenicidade , Salmonella/fisiologia , Sensibilidade e Especificidade , Shewanella/química , Shewanella/patogenicidade , Shewanella/fisiologia , Espectrometria de Massas em Tandem , Yersinia/química , Yersinia/patogenicidade , Yersinia/fisiologia
6.
Appl Environ Microbiol ; 81(7): 2339-48, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25616787

RESUMO

In anaerobic environments, mutually beneficial metabolic interactions between microorganisms (syntrophy) are essential for oxidation of organic matter to carbon dioxide and methane. Syntrophic interactions typically involve a microorganism degrading an organic compound to primary fermentation by-products and sources of electrons (i.e., formate, hydrogen, or nanowires) and a partner producing methane or respiring the electrons via alternative electron accepting processes. Using a transposon gene mutant library of the sulfate-reducing Desulfovibrio alaskensis G20, we screened for mutants incapable of serving as the electron-accepting partner of the butyrate-oxidizing bacterium, Syntrophomonas wolfei. A total of 17 gene mutants of D. alaskensis were identified as incapable of serving as the electron-accepting partner. The genes identified predominantly fell into three categories: membrane surface assembly, flagellum-pilus synthesis, and energy metabolism. Among these genes required to serve as the electron-accepting partner, the glycosyltransferase, pilus assembly protein (tadC), and flagellar biosynthesis protein showed reduced biofilm formation, suggesting that each of these components is involved in cell-to-cell interactions. Energy metabolism genes encoded proteins primarily involved in H2 uptake and electron cycling, including a rhodanese-containing complex that is phylogenetically conserved among sulfate-reducing Deltaproteobacteria. Utilizing an mRNA sequencing approach, analysis of transcript abundance in wild-type axenic and cocultures confirmed that genes identified as important for serving as the electron-accepting partner were more highly expressed under syntrophic conditions. The results imply that sulfate-reducing microorganisms require flagellar and outer membrane components to effectively couple to their syntrophic partners; furthermore, H2 metabolism is essential for syntrophic growth of D. alaskensis G20.


Assuntos
Biofilmes/crescimento & desenvolvimento , Clostridiales/fisiologia , Desulfovibrio/fisiologia , Flagelos/fisiologia , Formiatos/metabolismo , Hidrogênio/metabolismo , Simbiose , Clostridiales/crescimento & desenvolvimento , Clostridiales/metabolismo , Elementos de DNA Transponíveis , Desulfovibrio/genética , Desulfovibrio/crescimento & desenvolvimento , Desulfovibrio/metabolismo , Metabolismo Energético , Genes Bacterianos , Interações Microbianas , Mutagênese Insercional , Compostos Orgânicos/metabolismo
7.
J Contemp Dent Pract ; 16(8): 665-73, 2015 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-26423503

RESUMO

AIM: This study assessed the biocorrosive capacity of two bacteria: Desulfovibrio desulfuricans and Desulfovibrio fairfieldensis on endodontic files, as a preliminary step in the development of a biopharmaceutical, to facilitate the removal of endodontic file fragments from root canals. MATERIALS AND METHODS: In the first stage, the corrosive potential of the artificial saliva medium (ASM), modified Postgate E medium (MPEM), 2.5 % sodium hypochlorite (NaOCl) solution and white medium (WM), without the inoculation of bacteria was assessed by immersion assays. In the second stage, test samples were inoculated with the two species of sulphur-reducing bacteria (SRB) on ASM and modified artificial saliva medium (MASM). In the third stage, test samples were inoculated with the same species on MPEM, ASM and MASM. All test samples were viewed under an infinite focus Alicona microscope. RESULTS: No test sample became corroded when immersed only in media, without bacteria. With the exception of one test sample between those inoculated with bacteria in ASM and MASM, there was no evidence of corrosion. Fifty percent of the test samples demonstrated a greater intensity of biocorrosion when compared with the initial assays. CONCLUSION: Desulfovibrio desulfuricans and D. fairfieldensis are capable of promoting biocorrosion of the steel constituent of endodontic files. CLINICAL SIGNIFICANCE: This study describes the initial development of a biopharmaceutical to facilitate the removal of endodontic file fragments from root canals, which can be successfully implicated in endodontic therapy in order to avoiding parendodontic surgery or even tooth loss in such events.


Assuntos
Desulfovibrio/fisiologia , Endodontia/instrumentação , Preparo de Canal Radicular/instrumentação , Bactérias Redutoras de Enxofre/fisiologia , Corrosão , Desulfovibrio/classificação , Desulfovibrio/efeitos dos fármacos , Endodontia/métodos , Humanos , Preparo de Canal Radicular/métodos , Bactérias Redutoras de Enxofre/classificação , Bactérias Redutoras de Enxofre/efeitos dos fármacos
8.
Bioelectrochemistry ; 159: 108731, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-38759479

RESUMO

Carbon steel microbiologically influenced corrosion (MIC) by sulfate reducing bacteria (SRB) is known to occur via extracellular electron transfer (EET). A higher biofilm sessile cell count leads to more electrons being harvested for sulfate reduction by SRB in energy production. Metal surface roughness can impact the severity of MIC by SRB because of varied biofilm attachment. C1018 carbon steel coupons (1.2 cm2 top working surface) polished to 36 grit (4.06 µm roughness which is relatively rough) and 600 grit (0.13 µm) were incubated in enriched artificial seawater inoculated with highly corrosive Desulfovibrio ferrophilus IS5 at 28 â„ƒ for 7 d and 30 d. It was found that after 7 d of SRB incubation, 36 grit coupons had a 11% higher sessile cell count at (2.0 ± 0.17) × 108 cells/cm2, 52% higher weight loss at 22.4 ± 5.9 mg/cm2 (1.48 ± 0.39 mm/a uniform corrosion rate), and 18% higher maximum pit depth at 53 µm compared with 600 grit coupons. However, after 30 d, the differences diminished. Electrochemical tests with transient information supported the weight loss data trends. This work suggests that a rougher surface facilitates initial biofilm establishment but provides no long-term advantage for increased biofilm growth.


Assuntos
Biofilmes , Carbono , Desulfovibrio , Aço , Propriedades de Superfície , Corrosão , Aço/química , Desulfovibrio/metabolismo , Desulfovibrio/fisiologia , Carbono/química , Carbono/metabolismo , Elétrons , Transporte de Elétrons , Sulfatos/metabolismo , Sulfatos/química
9.
Microbiol Res ; 284: 127725, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38663233

RESUMO

Increasing studies have focused on the relationship between Desulfovibrio bacteria (DSV) and host health in recent years. However, little is known about the mechanisms by which DSV affects host health and the strategies to accurately regulate DSV numbers. This review mainly presents the relationship between DSV and host health, potential modulatory strategies, and the potential mechanisms affecting host health. Evidence suggests that DSV can both promote host health and induce the occurrence and development of disease, and these effects are closely related to its metabolites (e.g., H2S and short-chain fatty acids) and biofilm. DSV abundance in the intestine is influenced by probiotics, prebiotics, diet, lifestyle, and drugs.


Assuntos
Biofilmes , Desulfovibrio , Microbioma Gastrointestinal , Probióticos , Desulfovibrio/metabolismo , Desulfovibrio/fisiologia , Humanos , Microbioma Gastrointestinal/fisiologia , Biofilmes/crescimento & desenvolvimento , Intestinos/microbiologia , Prebióticos , Animais , Ácidos Graxos Voláteis/metabolismo , Sulfeto de Hidrogênio/metabolismo , Dieta
10.
Int J Syst Evol Microbiol ; 62(Pt 1): 33-37, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21317277

RESUMO

A psychrotolerant sulfate-reducing bacterium, designated B15(T), was isolated from supercooled water brine from within permafrost of the Varandey Peninsula, on the southern coast of the Barents Sea. Cells were Gram-negative, motile vibrions (3.0-4.0×0.4-0.5 µm) with a single polar flagellum. The isolate was positive for desulfoviridin as a bisulfite reductase. Strain B15(T) grew at -2 to 28 °C (optimum 24 °C) and with 0-2.0% NaCl (optimum 0.2%). The isolate used H(2) plus acetate, formate, ethanol, lactate, pyruvate and choline as electron donors and used sulfate, sulfite, thiosulfate, elemental sulfur, DMSO and Fe(3+) as electron acceptors. Pyruvate and lactate were not fermented in the absence of sulfate. The G+C content of genomic DNA was 55.2 mol%. Analysis of the 16S rRNA gene sequence showed that the isolate belonged to the genus Desulfovibrio. Its closest relatives were Desulfovibrio idahonensis CY1(T) (98.8% 16S rRNA gene sequence similarity) and Desulfovibrio mexicanus Lup1(T) (96.5%). On the basis of genotypic, phenotypic and phylogenetic characteristics, the isolate represents a novel species, for which the name Desulfovibrio arcticus sp. nov. is proposed; the type strain is B15(T) (=VKM B-2367(T)=DSM 21064(T)).


Assuntos
Desulfovibrio/classificação , Desulfovibrio/isolamento & purificação , Microbiologia Ambiental , Sulfatos/metabolismo , Técnicas de Tipagem Bacteriana , Composição de Bases , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Desulfovibrio/genética , Desulfovibrio/fisiologia , Flagelos/fisiologia , Sulfito de Hidrogênio Redutase/análise , Dados de Sequência Molecular , Oxirredução , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Temperatura
11.
Int J Syst Evol Microbiol ; 62(Pt 7): 1570-1575, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21873514

RESUMO

A taxonomic study was carried out on strain P1(T), which was isolated from mangrove sediment samples collected from Qinglan Port (Hainan, China). Cells were curved rods, that were motile, with a single polar flagellum. The strain was non-spore-forming with a cell size of 0.6×1.5-2.2 µm. Catalase and oxidase activities were not detected. Growth was observed in the temperature range 22-44 °C (optimum, 35-40 °C) and pH range 5.5-8.5 (optimum, pH 7.0). NaCl was required for growth and tolerated at up to 3.5% (w/v) (optimum, 0.5%). Strain P1(T) utilized hydrogen, succinate, L-malate, citrate, oxalate, DL-lactate, pyruvate, or cysteine as electron donors, and sulfate or sulfite as electron acceptors. Fermentation products from pyruvate were acetate, H(2) and CO(2). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain P1(T) formed a distinct evolutionary lineage within the family Desulfovibrionaceae. Strain P1(T) was most closely related to members of the genera Desulfovibrio (92.0-94.3% 16S rRNA gene sequence similarity), Desulfocurvus (91.1%), Bilophila (87.9%) and Lawsonia (86.0%) of the family Desulfovibrionaceae. The DNA G+C content of strain P1(T) was 64.5 mol% and the major cellular fatty acids were iso-C(15:0) (18.8%), anteiso-C(15:0) (5.0%), C(16:0) (14.2%) and iso-C(17:1)ω9c (24.4%). The predominant menaquinone was MK-7 (97%). Major polar lipids were phosphatidylcholine, phosphatidylethanolamine and phosphatidylglycerol. Strain P1(T) was distinguishable from members of phylogenetically related genera by differences in several phenotypic properties. On the basis of the phenotypic and phylogenetic data, strain P1(T) represents a novel species of a new genus, for which the name Desulfobaculum xiamenensis gen. nov., sp. nov. is proposed. The type strain of Desulfobaculum xiamenensis is P1(T) (=CGMCC 1.5166(T)=DSM 24233(T)).


Assuntos
Desulfovibrio/classificação , Desulfovibrio/isolamento & purificação , Sedimentos Geológicos/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , China , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Desulfovibrio/genética , Desulfovibrio/fisiologia , Ácidos Graxos/análise , Fermentação , Flagelos/fisiologia , Concentração de Íons de Hidrogênio , Locomoção , Dados de Sequência Molecular , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Temperatura , Vitamina K 2/análise
12.
J Bacteriol ; 193(16): 4268-9, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21685289

RESUMO

Desulfovibrio alaskensis G20 (formerly Desulfovibrio desulfuricans G20) is a Gram-negative mesophilic sulfate-reducing bacterium (SRB), known to corrode ferrous metals and to reduce toxic radionuclides and metals such as uranium and chromium to sparingly soluble and less toxic forms. We present the 3.7-Mb genome sequence to provide insights into its physiology.


Assuntos
Desulfovibrio/classificação , Desulfovibrio/genética , Genoma Bacteriano , Sequência de Bases , Desulfovibrio/fisiologia , Dados de Sequência Molecular
13.
Syst Appl Microbiol ; 43(5): 126105, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32847780

RESUMO

Two strains of sulfate-reducing bacteria (J.5.4.2-L4.2.8T and J.3.6.1-H7) were isolated from a pyrite-forming enrichment culture and were compared phylogenetically and physiologically to the closest related type strain Desulfovibrio sulfodismutans DSM 3696T. The isolated strains were vibrio-shaped, motile rods that stained Gram-negative. Growth occurred from 15 to 37°C and within a pH range of 6.5-8.5. Both strains used sulfate, thiosulfate, sulfite, and dimethyl sulfoxide (DMSO) as electron acceptor when grown with lactate. Lactate was incompletely oxidized to acetate. Formate and H2 were used as electron donor in the presence of acetate. Dismutation of thiosulfate and pyrosulfite was observed. The two new isolates differed from D. sulfodismutans by the utilization of DMSO as electron acceptor, 82% genome-wide average nucleotide identity (ANI) and 32% digital DNA-DNA hybridization (dDDH), thus representing a novel species. The type strain of the type species Desulfovibrio desulfuricans Essex6T revealed merely 88% 16S rRNA gene identity and 49% genome-wide average amino acid identity (AAI) to the new isolates as well as to D. sulfodismutans. Furthermore, the dominance of menaquinone MK-7 over MK-6 and the dominance of ai-C15:0 fatty acids were observed not only in the two new isolated strains but also in D. sulfodismutans. Therefore, the definition of a new genus is indicated for which the name Desulfolutivibrio is proposed. We propose for strains J.5.4.2-L4.2.8T and J.3.6.1-H7 the name Desulfolutivibrio sulfoxidireducens gen. nov. sp. nov. with strain J.5.4.2-L4.2.8T defined as type strain. In addition, we propose the reclassification of Desulfovibrio sulfodismutans as Desulfolutivibrio sulfodismutans comb. nov.


Assuntos
Desulfovibrio/classificação , Desulfovibrio/isolamento & purificação , Ferro/metabolismo , Sulfetos/metabolismo , Técnicas de Tipagem Bacteriana , Meios de Cultura , Desulfovibrio/citologia , Desulfovibrio/metabolismo , Desulfovibrio/fisiologia , Dimetil Sulfóxido/metabolismo , Ácidos Graxos/análise , Genes de RNAr , Genoma Bacteriano , Concentração de Íons de Hidrogênio , Oxirredução , Filogenia , RNA Ribossômico 16S/genética , Esgotos/microbiologia , Sulfatos/metabolismo , Temperatura
14.
Nat Rev Microbiol ; 18(12): 677-689, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32710089

RESUMO

Advances in imaging technologies have revealed that many bacteria possess organelles with a proteomically defined lumen and a macromolecular boundary. Some are bound by a lipid bilayer (such as thylakoids, magnetosomes and anammoxosomes), whereas others are defined by a lipid monolayer (such as lipid bodies), a proteinaceous coat (such as carboxysomes) or have a phase-defined boundary (such as nucleolus-like compartments). These diverse organelles have various metabolic and physiological functions, facilitating adaptation to different environments and driving the evolution of cellular complexity. This Review highlights that, despite the diversity of reported organelles, some unifying concepts underlie their formation, structure and function. Bacteria have fundamental mechanisms of organelle formation, through which conserved processes can form distinct organelles in different species depending on the proteins recruited to the luminal space and the boundary of the organelle. These complex subcellular compartments provide evolutionary advantages as well as enabling metabolic specialization, biogeochemical processes and biotechnological advances. Growing evidence suggests that the presence of organelles is the rule, rather than the exception, in bacterial cells.


Assuntos
Proteínas de Bactérias/química , Substâncias Macromoleculares/química , Magnetossomos/ultraestrutura , Biogênese de Organelas , Organelas/ultraestrutura , Proteínas de Bactérias/ultraestrutura , Caulobacter crescentus/fisiologia , Caulobacter crescentus/ultraestrutura , Compartimento Celular/fisiologia , Engenharia Celular/métodos , Desulfovibrio/fisiologia , Desulfovibrio/ultraestrutura , Escherichia coli/fisiologia , Escherichia coli/ultraestrutura , Substâncias Macromoleculares/ultraestrutura , Magnetossomos/fisiologia , Magnetospirillum/fisiologia , Magnetospirillum/ultraestrutura , Organelas/classificação , Organelas/fisiologia , Shewanella putrefaciens/fisiologia , Shewanella putrefaciens/ultraestrutura , Especificidade da Espécie
15.
Biochemistry ; 48(5): 873-82, 2009 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-19138103

RESUMO

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmental conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 microM molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.


Assuntos
Proteínas de Bactérias/biossíntese , Desulfovibrio/química , Regulação Bacteriana da Expressão Gênica/fisiologia , Ferro/metabolismo , Metaloproteínas/biossíntese , Molibdênio/química , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Desulfovibrio/fisiologia , Metaloproteínas/genética , Dados de Sequência Molecular , Molibdênio/fisiologia
16.
Environ Microbiol ; 11(4): 1007-15, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19170725

RESUMO

Rs-N31, a 16S rRNA phylotype affiliated with the genus Desulfovibrio, has frequently been detected from the gut of the wood-feeding termite Reticulitermes speratus. In this study, we designed a probe specifically targeting phylotype Rs-N31 and performed fluorescence in situ hybridization to identify the corresponding cells. The signals were detected exclusively inside the cells of the flagellate Trichonympha agilis, which simultaneously harbours another intracellular bacterium belonging to the candidate phylum Termite Group 1 (TG1). The detected cells were coccoid or short rods and specifically localized in the cortical layer of mainly, the anterior part of the flagellate cell. Approximately 1800 cells were contained in a single host cell, accounting for, in total, 2% of the whole prokaryotic gut microbiota. The genes dsrAB and apsA for sulfate reduction and a gene-encoding H(2)-uptake hydrogenase, both possessing a high sequence identity with those of known desulfovibrios, were obtained by polymerase chain reaction (PCR) from the host cells isolated using a micromanipulator, and their expression was verified by reverse-transcription PCR. Thus, we suggest that this endosymbiont acts as a sink for the hydrogen generated by both the flagellates and possibly TG1 symbionts. For this uncultured bacterium, we propose a novel species, 'Candidatus Desulfovibrio trichonymphae'.


Assuntos
Desulfovibrio/classificação , Desulfovibrio/isolamento & purificação , Eucariotos/microbiologia , Trato Gastrointestinal/parasitologia , Isópteros/parasitologia , Simbiose , Animais , Proteínas de Bactérias/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Desulfovibrio/fisiologia , Genes de RNAr , Hibridização in Situ Fluorescente , Dados de Sequência Molecular , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Homologia de Sequência do Ácido Nucleico
17.
Adv Appl Microbiol ; 68: 41-98, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19426853

RESUMO

Chemolithotrophic bacteria that use sulfate as terminal electron acceptor (sulfate-reducing bacteria) constitute a unique physiological group of microorganisms that couple anaerobic electron transport to ATP synthesis. These bacteria (220 species of 60 genera) can use a large variety of compounds as electron donors and to mediate electron flow they have a vast array of proteins with redox active metal groups. This chapter deals with the distribution in the environment and the major physiological and metabolic characteristics of sulfate-reducing bacteria (SRB). This chapter presents our current knowledge of soluble electron transfer proteins and transmembrane redox complexes that are playing an essential role in the dissimilatory sulfate reduction pathway of SRB of the genus Desulfovibrio. Environmentally important activities displayed by SRB are a consequence of the unique electron transport components or the production of high levels of H(2)S. The capability of SRB to utilize hydrocarbons in pure cultures and consortia has resulted in using these bacteria for bioremediation of BTEX (benzene, toluene, ethylbenzene and xylene) compounds in contaminated soils. Specific strains of SRB are capable of reducing 3-chlorobenzoate, chloroethenes, or nitroaromatic compounds and this has resulted in proposals to use SRB for bioremediation of environments containing trinitrotoluene and polychloroethenes. Since SRB have displayed dissimilatory reduction of U(VI) and Cr(VI), several biotechnology procedures have been proposed for using SRB in bioremediation of toxic metals. Additional non-specific metal reductase activity has resulted in using SRB for recovery of precious metals (e.g. platinum, palladium and gold) from waste streams. Since bacterially produced sulfide contributes to the souring of oil fields, corrosion of concrete, and discoloration of stonework is a serious problem, there is considerable interest in controlling the sulfidogenic activity of the SRB. The production of biosulfide by SRB has led to immobilization of toxic metals and reduction of textile dyes, although the process remains unresolved, SRB play a role in anaerobic methane oxidation which not only contributes to carbon cycle activities but also depletes an important industrial energy reserve.


Assuntos
Biotecnologia/métodos , Desulfovibrio , Bactérias Redutoras de Enxofre , Proteínas de Bactérias/metabolismo , Biodegradação Ambiental , Desulfovibrio/genética , Desulfovibrio/metabolismo , Desulfovibrio/fisiologia , Transporte de Elétrons , Oxirredução , Sulfatos/metabolismo , Bactérias Redutoras de Enxofre/genética , Bactérias Redutoras de Enxofre/metabolismo , Bactérias Redutoras de Enxofre/fisiologia
18.
Biometals ; 22(1): 131-9, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19130259

RESUMO

Molybdate is an essential trace element required by biological systems including the anaerobic sulfate-reducing bacteria (SRB); however, detrimental consequences may occur if molybdate is present in high concentrations in the environment. While molybdate is a structural analog of sulfate and inhibits sulfate respiration of SRB, little information is available concerning the effect of molybdate on pure cultures. We followed the growth of Desulfovibrio gigas ATCC 19364, Desulfovibrio vulgaris Hildenborough, Desulfovibrio desulfuricans DSM 642, and D. desulfuricans DSM 27774 in media containing sub-lethal levels of molybdate and observed a red-brown color in the culture fluid. Spectral analysis of the culture fluid revealed absorption peaks at 467, 395 and 314 nm and this color is proposed to be a molybdate-sulfide complex. Reduction of molybdate with the formation of molybdate disulfide occurs in the periplasm D. gigas and D. desulfuricans DSM 642. From these results we suggest that the occurrence of poorly crystalline Mo-sulfides in black shale may be a result from SRB reduction and selective enrichment of Mo in paleo-seawater.


Assuntos
Desulfovibrio/fisiologia , Molibdênio , Sulfatos/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Transporte Biológico/fisiologia , Desulfovibrio/genética , Molibdênio/química , Molibdênio/metabolismo , Oxirredução , Água do Mar/química , Sulfatos/química
19.
J Gen Appl Microbiol ; 55(2): 125-33, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19436129

RESUMO

A strictly anaerobic, mesophilic, sulfate-reducing bacterial strain (MSL79T) isolated from an estuarine sediment in the Sea of Japan of the Japanese islands was characterized phenotypically and phylogenetically. Cells were Gram-negative, motile with a polar flagellum, non-spore-forming, curved rods. Cells had desulfoviridin and c-type cytochrome. Catalase and oxidase activities were not detected. The optimum NaCl concentration for growth was 2.0% (wt/vol). The optimum temperature was 35 degrees C and the optimum pH was 6.5. Strain MSL79T utilized H2, formate, pyruvate, lactate, fumarate, malate, succinate, ethanol, propanol and butanol as electron donors for sulfate reduction. The organic electron donors were incompletely oxidized to mainly acetate. Sulfite and thiosulfate were used as electron acceptors with lactate as an electron donor. Without electron acceptors, pyruvate, fumarate and malate supported the growth. The genomic DNA G+C content was 62.1 mol%. Menaquinone MK-6(H2) was the major respiratory quinone. Major cellular fatty acids were C16:0, iso-C15:0, anteiso-C15:0, iso-C17:0, anteiso-C17:0 and iso-C17:1omega9. Phylogenetic analysis based on the 16S rRNA gene sequence as well as the alpha-subunit of dissimilatory sulfite reductase gene sequence assigned the strain to the family Desulfovibrionaceae within the class Deltaproteobacteria. The closest validly described species based on the 16S rRNA gene sequences were Desulfovibrio aespoeensis (sequence similarity; 95.0%) and Desulfovibrio profundus (94.3%). On the basis of the significant differences in the 16S rRNA gene sequences and the phenotypic characteristics between strain MSL79T and each of the most closely related species, Desulfovibrio portus sp. nov. is proposed. The type strain is MSL79T (=JCM 14722T=DSM 19338T).


Assuntos
Desulfovibrio/classificação , Desulfovibrio/fisiologia , Sedimentos Geológicos/microbiologia , DNA Bacteriano/genética , Desulfovibrio/química , Desulfovibrio/enzimologia , Ácidos Graxos/análise , Filogenia , RNA Ribossômico 16S/genética , Especificidade da Espécie , Bactérias Redutoras de Enxofre/química , Bactérias Redutoras de Enxofre/classificação , Bactérias Redutoras de Enxofre/enzimologia , Bactérias Redutoras de Enxofre/fisiologia
20.
Sci Total Environ ; 657: 945-952, 2019 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-30677960

RESUMO

Sulfur oxide emissions can lead to acidic precipitation and health concerns. Flue gas desulfurization (FGD) systems treat these emissions generating a wastewater with high-sulfate content. This work is the first attempt to treat this effluent with bioelectrochemical systems (BES) in order to recover elemental sulfur, a technology that allows the treatment of several wastewaters that lack of electron donor. The sulfate treatment and elemental sulfur recovery have been studied in a biocathode with simultaneous sulfate reduction to sulfide and partial sulfide oxidation, comparing the performance obtained with synthetic and real wastewater. A decrease of the sulfate removal rate (SRR) from 108 to 73mgS-SO42-L-1d-1 was observed coupled to an increase in the elemental sulfur recovery from 1.4 to 27mgS-S0L-1d-1. This elemental sulfur recovered as a solid from the real wastewater represented a 64% of the theoretical elemental sulfur produced (the elemental sulfur corresponded to a 72% of the solid weight). In addition, microbial communities analysis of the membrane and cathode biofilms and planktonic biomass showed that the real wastewater allowed a higher growth of sulfur oxidizing bacteria (SOB) adapted to more complex waters as Halothiobacillus sp. while decreasing the relative abundance of sulfate reducing bacteria (SRB).


Assuntos
Eletrodos/microbiologia , Consórcios Microbianos/fisiologia , Enxofre/isolamento & purificação , Eliminação de Resíduos Líquidos/métodos , Processos Autotróficos , Indústria Química , Desulfovibrio/fisiologia , Técnicas Eletroquímicas/instrumentação , Técnicas Eletroquímicas/métodos , Sulfatos/química
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