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1.
J Low Genit Tract Dis ; 25(4): 287-290, 2021 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-34456270

RESUMO

OBJECTIVE: The aim of the study was to estimate human papillomavirus (HPV) vaccination efficacy in reducing recurrence risk within 4 years after conization for high-grade cervical neoplasia. MATERIALS AND METHODS: From January 2012 to June 2015, we performed a longitudinal, observational study (case-series study) on patients diagnosed with cervical intraepithelial neoplasia 2-3 neoplasia. Efficacy was estimated by a 95% CI of the relative risk, relative risk reduction, attributable risk, and number needed to treat. Parametric and nonparametric tests were used as appropriate to compare 160 vaccinated with 171 nonvaccinated patients. To estimate the hazard ratio of the vaccinated status, patients were subjected to multivariable analyses based on the Cox proportional hazard model. To compare recurrence-free survival, a Kaplan-Meier model and a log-rank test were applied. RESULTS: The overall recurrence was 9.4% in the nonvaccinated and 2.5% in the vaccinated group (p = .009). Vaccination was associated with a significant decrease in the relative risk (73.5%, 95% CI = 21.8%-90.9%) with a mean number needed to treat of 14 patients per relapse prevented. Although positive conization margins were related to the highest recurrence risk, not being vaccinated independently increased this risk 3.5-fold in a 4-year follow-up (p = .025). Cumulative recurrence-free rates differed significantly between both groups (log-rank test: p = .009). CONCLUSIONS: Our study corroborates the benefits of HPV vaccination, recommends a closer and longer follow-up in nonvaccinated women, and offers a 4-year prognosis for patients undergoing conization for high-grade cervical lesions.


Assuntos
Alphapapillomavirus , Infecções por Papillomavirus , Vacinas contra Papillomavirus , Neoplasias do Colo do Útero , Conização , Feminino , Gammapapillomavirus , Humanos , Recidiva Local de Neoplasia , Infecções por Papillomavirus/complicações , Infecções por Papillomavirus/prevenção & controle , Neoplasias do Colo do Útero/prevenção & controle , Neoplasias do Colo do Útero/cirurgia , Vacinação
2.
Virol J ; 17(1): 44, 2020 03 31.
Artigo em Inglês | MEDLINE | ID: mdl-32234038

RESUMO

A complete genome sequence of human papillomaviruses (HPV) named as HPV-ujs-21015 was determined by viral metagenomic and PCR methods. The complete genome is 7354 bp in length with GC content of 41.7%, of which the genome was predicted to contain six ORFs (Open Reading Frame, ORF) coding for four early proteins (E7, E1, E4, and E2) and two late proteins (L1 and L2). Phylogenetic analysis based on the complete genome and the L1 protein showed that HPV-ujs-21015 belongs to a type 214 member within genus Gamma-6 papillomavirus. It is the first complete genome of Gamma-6 papillomavirus discovered from pregnant women in China.


Assuntos
Gammapapillomavirus/genética , Gammapapillomavirus/isolamento & purificação , Genoma Viral , Metagenoma , Vagina/virologia , Povo Asiático , Proteínas do Capsídeo/genética , China , Feminino , Humanos , Fases de Leitura Aberta , Infecções por Papillomavirus/virologia , Filogenia , Gravidez , Análise de Sequência de DNA , Proteínas Virais/genética
3.
BMC Infect Dis ; 20(1): 274, 2020 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-32264841

RESUMO

BACKGROUND: Human papillomaviruses (HPVs) have been divided into mucosal and cutaneous types according to their primary epithelial tissue tropism. However, recent studies showed the presence of several cutaneous types in mucosal lesions and healthy mucosa from different anatomical sites. METHODS: Here, the HPV prevalence and type-specific distribution were assessed in a variety of mucosal samples from 435 individuals using a combination of two established broad-spectrum primer systems: Gamma-PV PCR and CUT PCR. RESULTS: Overall HPV prevalence in anal canal swabs, cervical cancer biopsies, genital warts and oral swabs was 85, 47, 62 and 4%, respectively. In anal canal swabs, Alpha-PVs were most frequently found (59%), followed by Gamma- (37%) and Beta-PVs (4%). The prevalence and persistence of HPV infection in the anal canal of 226 individuals were further explored. Overall HPV, Gamma-PVs and multiple HPV infections were significantly higher in men vs. women (p = 0.034, p = 0.027 and p = 0.003, respectively); multiple HPV infections were more common in individuals ≤40 years (p = 0.05), and significantly higher prevalence of Gamma-PVs and multiple HPV infections was observed in HIV-1-positive vs. HIV-1-negative individuals (p = 0.003 and p = 0.04, respectively). Out of 21 patients with follow-up anal swabs, only one persistent infection with the same type (HPV58) was detected. CONCLUSIONS: Our findings suggest that Gamma-PVs (except species Gamma-6) are ubiquitous viruses with dual muco-cutaneous tissue tropism. Anal canal Gamma-PV infections may be associated with sexual behavior and the host immune status. This study expands the knowledge on Gamma-PVs' tissue tropism, providing valuable data on the characteristics of HPV infection in the anal canal.


Assuntos
Doenças do Ânus/complicações , Gammapapillomavirus/genética , Soropositividade para HIV/complicações , HIV-1/imunologia , Mucosa Bucal/virologia , Infecções por Papillomavirus/complicações , Infecções por Papillomavirus/epidemiologia , Reação em Cadeia da Polimerase/métodos , Adolescente , Adulto , Idoso , Doenças do Ânus/virologia , Sequência de Bases/genética , Condiloma Acuminado/virologia , Epitélio/virologia , Feminino , Seguimentos , Humanos , Masculino , Pessoa de Meia-Idade , Infecções por Papillomavirus/virologia , Prevalência , Neoplasias do Colo do Útero/patologia , Neoplasias do Colo do Útero/virologia , Adulto Jovem
4.
Molecules ; 25(7)2020 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-32290261

RESUMO

The human gamma-herpesviruses Epstein-Barr virus (EBV) (HHV-4) and Kaposi's sarcoma-associated herpesvirus (KSHV) (HHV-8) are responsible for a number of diseases, including various types of cancer. Epstein-Barr nuclear antigen 1 (EBNA1) from EBV and latency-associated nuclear antigen (LANA) from KSHV are viral-encoded DNA-binding proteins that are essential for the replication and maintenance of their respective viral genomes during latent, oncogenic infection. As such, EBNA1 and LANA are attractive targets for the development of small-molecule inhibitors. To this end, we performed a biophysical screen of EBNA1 and LANA using a fragment library by saturation transfer difference (STD)-NMR spectroscopy and surface plasmon resonance (SPR). We identified and validated a number of unique fragment hits that bind to EBNA1 or LANA. We also determined the high-resolution crystal structure of one fragment bound to EBNA1. Results from this screening cascade provide new chemical starting points for the further development of potent inhibitors for this class of viral proteins.


Assuntos
Antígenos Virais/química , DNA Viral/química , Proteínas de Ligação a DNA/química , Descoberta de Drogas , Antígenos Nucleares do Vírus Epstein-Barr/química , Proteínas Nucleares/química , Antígenos Virais/metabolismo , DNA Viral/metabolismo , Proteínas de Ligação a DNA/metabolismo , Descoberta de Drogas/métodos , Antígenos Nucleares do Vírus Epstein-Barr/metabolismo , Gammapapillomavirus , Herpesvirus Humano 4 , Herpesvirus Humano 8/metabolismo , Humanos , Ligantes , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Proteínas Nucleares/metabolismo , Bibliotecas de Moléculas Pequenas , Relação Estrutura-Atividade
5.
J Infect Dis ; 219(7): 1067-1075, 2019 03 15.
Artigo em Inglês | MEDLINE | ID: mdl-30395247

RESUMO

BACKGROUND: Little is known about the epidemiology of ß and γ human papillomaviruses (HPVs) in oral cavities of healthy women. METHODS: We performed multiplex polymerase chain reaction analysis for detection of 46 ß-HPVs and 51 γ-HPVs in stored oral rinse samples from healthy mid-adult women (age, 30-50 years). A total of 407 women were tested for ß-HPVs, and 310 were tested for γ-HPVs. We used log-binomial regression to identify determinants of ß-HPV and γ-HPV in separate models. Using paired fingernail data from a subset of 184 women, we also evaluated whether fingernail ß-HPV detection was associated with concurrent detection of the same type in the oral cavity. RESULTS: Oral HPV prevalence was 20.6% for ß-HPV and 10.7% for γ-HPV. In multivariate analysis, oral ß-HPV detection was associated with increasing age (adjusted prevalence ratio [aPR] per 5-year difference, 1.37; 95% confidence interval [CI], 1.01-1.86) and a greater lifetime number of oral sex partners (aPR for reporting ≥6 vs 0-5 partners, 2.06; 95% CI, 1.01-4.20). In a separate model, concurrent detection of the same ß-HPV type in fingernails was strongly associated with oral ß-HPV detection (aPR, 31.44; 95% CI, 19.81-49.49). No significant determinants of γ-HPV detection were identified. CONCLUSIONS: Our results suggest a sexual transmission route for ß-HPVs and support the hypothesis that fingers may serve as a source of transmission or autoinoculation of ß-HPVs to the oral cavity.


Assuntos
Betapapillomavirus , Portador Sadio/epidemiologia , Portador Sadio/virologia , Gammapapillomavirus , Infecções por Papillomavirus/epidemiologia , Infecções por Papillomavirus/virologia , Adulto , Betapapillomavirus/genética , Feminino , Gammapapillomavirus/genética , Genótipo , Humanos , Masculino , Boca/virologia , Unhas/virologia , Prevalência , Fatores de Risco , Comportamento Sexual , Parceiros Sexuais
6.
BMC Genomics ; 20(1): 368, 2019 May 14.
Artigo em Inglês | MEDLINE | ID: mdl-31088349

RESUMO

BACKGROUND: Human papillomaviruses (HPVs) are genetically diverse, belonging to five distinct genera: Alpha, Beta, Gamma, Mu and Nu. All papillomaviruses have double stranded DNA genomes that are thought to evolve slowly because they co-opt high-fidelity host cellular DNA polymerases for their replication. Despite extensive efforts to catalogue all the HPV species that infect humans, it is likely that many still remain undiscovered. Here we use the sequences of ten novel Gammapapillomaviruses (Gamma-PVs) characterized in previous studies and related HPVs to analyse the evolutionary dynamics of these viruses at the whole genome and individual gene scales. RESULTS: We found statistically significant incongruences between the phylogenetic trees of different genes which imply gene-to-gene variation in the evolutionary processes underlying the diversification of Gamma-PVs. We were, however, only able to detect convincing evidence of a single recombination event which, on its own, cannot explain the observed incongruences between gene phylogenies. The divergence times of the last common ancestor (LCA) of the Alpha, Beta, Mu, Nu and Gamma genera was predicted to have existed between 49.7-58.5 million years ago, before splitting into the five main lineages. The LCA of the Gamma-PVs at this time was predicted to have existed between 45.3 and 67.5 million years ago: approximately at the time when the simian and tarsier lineages of the primates diverged. CONCLUSION: Consequently, we report here phylogenetic tree incongruence without strong evidence of recombination.


Assuntos
DNA Viral/análise , Gammapapillomavirus/classificação , Análise de Sequência de DNA/métodos , Animais , Evolução Molecular , Gammapapillomavirus/genética , Genoma Viral , Humanos , Filogenia , Recombinação Genética
7.
Br J Dermatol ; 180(6): 1449-1458, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30431148

RESUMO

BACKGROUND: Cutaneous viral infections and immune suppression are risk factors for some forms of nonmelanoma skin cancer; however, their interrelationship is poorly understood. OBJECTIVES: To examine cross-sectional associations between cutaneous viral infections and circulating forkhead-box P3 (FOXP3)-expressing T-regulatory (Treg) cells, suppressive cells that dampen effective antitumour immunity. MATERIALS AND METHODS: Blood, eyebrow hair (EBH) and skin swab (SSW) samples were collected from 352 patients 60 years and older undergoing skin screening, without prevalent skin cancer, while participating in an ongoing prospective cohort study of cutaneous viral infections and skin cancer. DNA corresponding to 98 cutaneous human papillomavirus (HPV) types and five human polyomaviruses (HPyV) was assessed in EBH and SSW. Distinct classes of circulating Treg-cell subpopulations were defined by flow cytometry including cutaneous lymphocyte antigen (CLA) and CCR4high Treg cells, both previously associated with cutaneous diseases. Age- and sex-adjusted associations between circulating T-cell populations and infection were estimated using logistic regression. RESULTS: Total Treg-cell proportion in peripheral blood was not associated with ß HPV or HPyV infection. However, the proportion of circulating CLA+ Treg cells was inversely associated with γ HPV EBH infection [odds ratio (OR) 0·54, 95% confidence interval (CI) 0·35-0·84]. Interestingly, circulating Treg cells expressing markers indicative of antigen activation (CD27- CD45RA- FOXP3+ CD4+ ) were also inversely associated with γ HPV infection in SSW (OR 0·55, 95% CI 0·30-0·99) and EBH (OR 0·56, 95% CI 0·36-0·86). CONCLUSIONS: Inverse associations between circulating Treg cells and γ HPV infection suggest that localized viral infection may promote immunosuppressive cell migration into skin.


Assuntos
Gammapapillomavirus/isolamento & purificação , Tolerância Imunológica , Infecções por Papillomavirus/imunologia , Dermatopatias Virais/imunologia , Linfócitos T Reguladores/imunologia , Idoso , Carcinogênese/imunologia , Estudos Transversais , DNA Viral/isolamento & purificação , Sobrancelhas/imunologia , Sobrancelhas/virologia , Feminino , Gammapapillomavirus/genética , Gammapapillomavirus/imunologia , Humanos , Masculino , Pessoa de Meia-Idade , Infecções por Papillomavirus/sangue , Infecções por Papillomavirus/virologia , Polyomavirus/genética , Polyomavirus/imunologia , Polyomavirus/isolamento & purificação , Infecções por Polyomavirus/sangue , Infecções por Polyomavirus/imunologia , Infecções por Polyomavirus/virologia , Estudos Prospectivos , Pele/imunologia , Pele/virologia , Dermatopatias Virais/sangue , Dermatopatias Virais/virologia , Neoplasias Cutâneas/imunologia , Infecções Tumorais por Vírus/sangue , Infecções Tumorais por Vírus/imunologia , Infecções Tumorais por Vírus/virologia
8.
J Infect Dis ; 218(3): 388-397, 2018 07 02.
Artigo em Inglês | MEDLINE | ID: mdl-29982800

RESUMO

Background: Knowledge of the prevalence of and risk factors for oral human papillomavirus (HPV) infection, especially cutaneous types, is limited. Methods: A population-based study using next-generation sequencing consecutively recruited asymptomatic individuals aged 18-64 years from a proportional sampling of the general population of Hong Kong, according to age groups, gender, and regions of residence. We examined associations of alpha-, beta-, and gamma-HPVs from oral rinse samples with participants' sociodemographics by logistic regression models. Results: The prevalence of oral HPV infection among 1426 ethnic Chinese was 15.5% (95% confidence interval [CI], 13.7%-17.5%), 2.5% (95% CI, 1.8%-3.5%), 11.9% (95% CI, 10.3%-13.6%), and 2.9% (95% CI, 2.1%-3.9%) for any type, alpha-, beta-, and gamma-HPV, respectively. Prevalence of any high-risk HPV was 0.8% (95% CI, 0.4%-1.4%), and that of HPV-16 was 0.4% (95% CI, 0.2%-0.8%). HPV-8 and HPV-98 were the most common beta types detected, while HPV-4 and HPV-SD2R were the most common gamma types. Prevalence of alpha- and beta/gamma-HPV infection showed a similar pattern of increase with age, and was higher in men than women. Smoking, drinking, oral sex, and more sexual partners were associated with alpha-HPV. Teeth brushing before sleep was protective for beta/gamma-HPVs. Discussion: The epidemiologic factors associated with oral infection with alpha-HPVs are different from those of beta/gamma-HPVs, suggesting different modes of acquisition and persistence.


Assuntos
Alphapapillomavirus/isolamento & purificação , Betapapillomavirus/isolamento & purificação , Gammapapillomavirus/isolamento & purificação , Doenças da Boca/epidemiologia , Papillomaviridae/isolamento & purificação , Infecções por Papillomavirus/epidemiologia , Adolescente , Adulto , Idoso , Alphapapillomavirus/classificação , Alphapapillomavirus/genética , Povo Asiático , Doenças Assintomáticas , Betapapillomavirus/classificação , Betapapillomavirus/genética , Demografia , Feminino , Gammapapillomavirus/classificação , Gammapapillomavirus/genética , Sequenciamento de Nucleotídeos em Larga Escala , Hong Kong/epidemiologia , Humanos , Masculino , Pessoa de Meia-Idade , Doenças da Boca/virologia , Papillomaviridae/classificação , Infecções por Papillomavirus/virologia , Prevalência , Fatores de Risco , Fatores Socioeconômicos , Inquéritos e Questionários , Adulto Jovem
9.
J Gen Virol ; 99(1): 109-118, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29244018

RESUMO

A modified pan-PV consensus-degenerate hybrid oligonucleotide primer (CODEHOP) PCR was developed for generic and sensitive detection of a broad-spectrum of human papillomaviruses (HPVs) infecting the cutaneous epithelium. To test the analytical sensitivity of the assay we examined 149 eyebrow hair follicle specimens from immunocompetent male patients. HPV DNA was detected in 60 % (89/149) of analysed eyebrow samples with a total of 48 different HPV sequences, representing 21 previously described HPVs and 27 putative novel HPV types. Evidence for ten novel HPV subtypes and seven viral variants, clustering to three out of five genera containing cutaneous HPVs, was also obtained. Thus, we have shown that the modified pan-PV CODEHOP PCR assay is able to identify multiple HPV types, even from different genera, in the same clinical sample. Overall, these results demonstrate that the pan-PV CODEHOP PCR is an excellent tool for screening and identification of novel cutaneous HPVs, even in samples with low viral loads.


Assuntos
Betapapillomavirus/isolamento & purificação , Primers do DNA/química , DNA Viral/genética , Gammapapillomavirus/isolamento & purificação , Genótipo , Infecções por Papillomavirus/diagnóstico , Reação em Cadeia da Polimerase/métodos , Adulto , Sequência de Bases , Betapapillomavirus/classificação , Betapapillomavirus/genética , Primers do DNA/metabolismo , Sobrancelhas/virologia , Gammapapillomavirus/classificação , Gammapapillomavirus/genética , Folículo Piloso/virologia , Humanos , Masculino , Tipagem Molecular/métodos , Infecções por Papillomavirus/epidemiologia , Infecções por Papillomavirus/virologia , Filogenia , Prevalência , Sensibilidade e Especificidade , Eslovênia/epidemiologia
10.
Gynecol Obstet Invest ; 82(3): 307-310, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28380476

RESUMO

We describe here a case of high-grade vaginal squamous lesion in a 54-year-old woman with a papillomaviruses (HPV) genital infection that developed from a cervical low-grade squamous intraepithelial lesion (SIL) to a high-grade SIL (H-SIL) on cytological examination. A colposcopy exam led to the detection of suspect vaginal lesions with granulomatous infiltrations, which were classified as a Vaginal Intra-Epithelial Neoplasia grade 2 after pathologists' analyses. After a laser vaginal surgery and a loop excision of the transformation zone, the analyses of the anatomical pieces using a near-complete HPV screening panel revealed an HPV-4 infection that was not detected before in cervical smears. This HPV-infection is associated with a high human herpesvirus type 6A (HHV-6A) viral load in the same anatomical piece. The presence of an inherited chromosomally integrated HHV-6A (iciHHV-6A) was proved in this patient by real-time polymerase chain reaction on hair follicles and nail. This case suggests reconsidering both the benign nature of low-grade lesions in the female genital tract and the well-known "good" prognosis of low-risk HPV infection, especially when iciHHV-6A is diagnosed. This clinical course insists on the benefits of the multiplex panel use or global sequencing in order to optimize biological testing sensitivity, and so enhance clinical management of infection-induced neoplasia.


Assuntos
Herpesvirus Humano 6 , Infecções por Roseolovirus/complicações , Neoplasias Vaginais/virologia , Anticorpos Antivirais/sangue , Colposcopia , DNA Viral/análise , Feminino , Gammapapillomavirus , Herpesvirus Humano 6/imunologia , Humanos , Pessoa de Meia-Idade , Papillomaviridae/genética , Infecções por Papillomavirus/diagnóstico , Infecções por Papillomavirus/genética , Infecções por Papillomavirus/virologia , Infecções por Roseolovirus/imunologia , Lesões Intraepiteliais Escamosas Cervicais/patologia , Lesões Intraepiteliais Escamosas Cervicais/virologia , Neoplasias do Colo do Útero/patologia , Vagina/patologia , Neoplasias Vaginais/patologia , Neoplasias Vaginais/cirurgia , Integração Viral/genética , Displasia do Colo do Útero/patologia , Displasia do Colo do Útero/virologia
11.
Pol J Pathol ; 68(4): 330-342, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29517204

RESUMO

Human papillomaviruses (HPVs) are a large and ubiquitous group of viruses that some of them have been suggested as a co-factor in the development of non-melanoma skin cancers. The aim of this meta-analysis study was to evaluate HPVs' prevalence in basal cell carcinoma (BCC) of the skin and the risk of them in the BCC patients compared with the healthy controls. Five databases were searched from January 1980 to February 2017. A random-effects meta-analysis was done with the event rate (ER) for the prevalence of HPVs and odds ratio (OR) for estimation of the incidence of HPVs. Out of 1087 studies, 45 studies were included in the review. The pooled analysis demonstrated that the incidence of γ-HPV was effective in the BCC patients compared with the healthy controls [OR = 1.97; 95% CI: 1.52-2.55; p < 0.00001], but not for α-HPV, ß-HPV and epidermodysplasia verruciformis (EV)-HPV (p > 0.05). The pooled ER of incidence of ß1-HPV in the BCC patients was z3.3% and for ß2-HPV in BCC patients was 44.2%. In conclusion, this meta-analysis showed that probably the risk of γ-HPV was more on BCC patients and also the rate of γ-HPV was higher than α-, ß- and EV-HPVs in the BCC patients.


Assuntos
Carcinoma Basocelular/virologia , Transformação Celular Viral , Gammapapillomavirus/patogenicidade , Infecções por Papillomavirus/virologia , Neoplasias Cutâneas/virologia , Alphapapillomavirus/genética , Alphapapillomavirus/patogenicidade , Betapapillomavirus/genética , Betapapillomavirus/patogenicidade , Carcinoma Basocelular/epidemiologia , Carcinoma Basocelular/patologia , Distribuição de Qui-Quadrado , DNA Viral/genética , Gammapapillomavirus/genética , Interações Hospedeiro-Patógeno , Testes de DNA para Papilomavírus Humano , Humanos , Incidência , Razão de Chances , Infecções por Papillomavirus/epidemiologia , Infecções por Papillomavirus/patologia , Prevalência , Fatores de Risco , Neoplasias Cutâneas/epidemiologia , Neoplasias Cutâneas/patologia
12.
Virol J ; 13: 122, 2016 07 04.
Artigo em Inglês | MEDLINE | ID: mdl-27411548

RESUMO

BACKGROUND: The number of members in the genus Gammapapillomavirus of Family Papillomaviridae has recently been expanding most rapidly. The aim of this study was to characterize a novel human gammapapillomavirus type identified in a vaginal swab from a 25-year-old pregnant woman suffering from vaginitis. METHODS: Viral metagenomics method was used to detect the viral sequences in 88 vaginal swab samples collected from 88 pregnant women with vaginitis. A novel papillomavirus, named HPV-ZJ01 (GenBank no. KX082661), was detected in one sample and its complete genome sequence was amplified by PCR and sequenced by Sanger walking. Phylogenetic analyses based on the complete genome and the L1 protein of HPV-ZJ01 and other representative human papillomaviruses were done, respectively. Further PCR screening was performed in vaginal swabs (n = 135), cervical smears (n = 40) and cervical cancer tissues (n = 40) using nested-PCR primers designed based on HPV-ZJ01 sequence to investigate the prevalence of HPV-ZJ01. RESULTS: The genome of HPV-ZJ01 is 7,358 bp in length with a GC content of 37.8 %. HPV-ZJ01 was predicted to contain six open reading frames (E6, E7, E1, E2, L2, and L1) and a non-coding long control region (LCR). The genome shared the highest overall similarity to HPV-166, with 70.6 % nucleotide sequence identity while its L1 gene shared the highest nucleotide similarity to HPV-162, with 71.1 % sequence identity. Phylogenetic analysis suggested that HPV-ZJ01 belongs to a novel HPV type in the Gamma-PV genus, species Gamma-19, already containing HPV161, HPV162 and HPV166. PCR screening results indicated that none of the other samples were positive for HPV-ZJ01 except the original HPV-ZJ01 positive vaginal swab specimen. CONCLUSION: The genome sequence of a novel type of species Gamma-19 HPV was characterized. The screening PCR results suggested that HPV-ZJ01 is not associated with any of the cervical cancer samples tested. In order to confirm the prevalence and disease association, if any, for HPV-ZJ01, a further study with different sample types and a larger sample size is needed.


Assuntos
Gammapapillomavirus/isolamento & purificação , Infecções por Papillomavirus/virologia , Complicações na Gravidez/virologia , Vagina/virologia , Adulto , Feminino , Gammapapillomavirus/classificação , Gammapapillomavirus/genética , Genoma Viral , Humanos , Metagenômica , Fases de Leitura Aberta , Filogenia , Gravidez , Gestantes , Proteínas Virais/genética
13.
Arch Virol ; 160(2): 549-52, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25362545

RESUMO

A highly divergent human papillomavirus, named HPV-CH2, was identified in fecal samples from children with diarrhea in China by 454 high-throughput sequencing. Here, we report the complete genome sequence and genetic organization of the virus. The full-length nucleotide sequence of HPV-CH2 shares the highest sequence similarity with HPV-156, with 72 % nucleotide sequence identity. The L1 gene of the HPV-CH2 shared <70 % nucleotide identity with previously reported HPVs, suggesting HPV-CH2 as a new type of papillomavirus. Phylogenetic analysis revealed that the HPV-CH2 belongs to the genus Gammapapillomavirus. No HPV-CH2 was detected by PCR in samples from children with both gastroenteritis and respiratory infection.


Assuntos
DNA Viral/genética , Diarreia/virologia , Gammapapillomavirus/genética , Genoma Viral/genética , Sequência de Bases , Pré-Escolar , China , Fezes/virologia , Gammapapillomavirus/classificação , Gammapapillomavirus/isolamento & purificação , Variação Genética , Humanos , Lactente , Metagenômica , Infecções por Papillomavirus/virologia , Filogenia , Análise de Sequência de DNA
15.
Int J Cancer ; 133(7): 1713-20, 2013 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-23536363

RESUMO

Human papillomavirus (HPV) infection is common worldwide and, in immunodeficient populations, may contribute to the pathogenesis of keratinocyte cancers, particularly squamous cell carcinomas (SCC). However, their role in SCC in the general population is less clear. We conducted a comprehensive analysis to investigate the independent effects of seropositivity for cutaneous alpha, beta and gamma HPV types on risk of SCC, and a meta-analysis of the available literature. In a population-based case-control study from New Hampshire, USA (n = 1,408), histologically confirmed SCC cases and controls were tested for L1 antibodies to alpha, beta and gamma cutaneous HPV types 2-5, 7-10, 15, 17, 20, 23, 24, 27b, 36, 38, 48-50, 57, 65, 75-77, 88, 92, 95, 96, 101, 103 and 107 using multiplex serology. An increasing risk of SCC with number of beta HPVs to which an individual tested positive was observed even among those seronegative for gamma types (p for trend = 0.016) with an odds ratio of 1.95 (95% confidence interval (CI) = 1.07-3.56) for four or more beta types positive. In a meta-analysis of six case-control studies, increased SCC risks in relation to beta HPV seropositivity were found across studies (meta odds ratio = 1.45, CI = 1.27-1.66). While the prevalence of gamma HPVs assayed was somewhat higher among SCC cases than controls, the association was only weakly evident among those seronegative for beta HPVs. Overall, the association between cutaneous HPVs and skin cancers appears to be specific to SCC and to genus beta HPVs in a general US population.


Assuntos
Carcinoma de Células Escamosas , Infecções por Papillomavirus/epidemiologia , Neoplasias Cutâneas , Adulto , Idoso , Alphapapillomavirus , Betapapillomavirus , Carcinoma de Células Escamosas/epidemiologia , Carcinoma de Células Escamosas/etiologia , Carcinoma de Células Escamosas/virologia , Estudos de Casos e Controles , Estudos de Coortes , Feminino , Gammapapillomavirus , Humanos , Masculino , Pessoa de Meia-Idade , Prevalência , Fatores de Risco , Pele/virologia , Neoplasias Cutâneas/epidemiologia , Neoplasias Cutâneas/etiologia , Neoplasias Cutâneas/virologia , Estados Unidos
16.
J Gen Virol ; 94(Pt 3): 524-533, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23136368

RESUMO

This study developed a hanging-droplet long PCR, a generic and highly sensitive strategy to facilitate the identification of new human papillomavirus (HPV) genomes. This novel procedure used for the first time the hanging-droplet PCR technique for the amplification of long DNA fragments with generic primers targeting the L1 and E1 regions. It was first applied to the amplification of types belonging to the highly divergent genus Gammapapillovirus (γ-PV). The hanging-droplet long PCR was 100-fold more sensitive than a simple long PCR procedure, detecting as few as ten copies of HPV-4. Nineteen skin samples, potentially containing putative HPV types from the γ-PV genus, were also screened. The method identified four γ-PV genomic halves from new and previously described putative types, and made the full characterization of HPV-156 possible. This novel virus meets the criteria for a new species within the γ-PV genus, with nucleotide identities in the L1 ORF ranging from 58.3 to 67.3 % compared with representative types of the current γ-PV species. HPV-156 showed the highest identity to HPV-60 (67.3 %) from species γ-4, and was consistently closely related to it in both late- and early-gene-derived phylogenies. In conclusion, this report provides a versatile and highly sensitive approach that allowed identification of the prototype of a new species within the γ-PV genus. Its application with primers targeting the different genera in which both human and non-human PVs are distributed may facilitate characterization of the missing members of the family Papillomaviridae.


Assuntos
Alphapapillomavirus/classificação , DNA Viral/genética , Gammapapillomavirus/classificação , Gammapapillomavirus/genética , Reação em Cadeia da Polimerase/métodos , Alphapapillomavirus/genética , Especiação Genética , Humanos , Dados de Sequência Molecular , Filogenia
17.
J Gen Virol ; 94(Pt 11): 2480-2488, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23997181

RESUMO

More than 170 human papillomavirus (HPV) types have been completely sequenced, curated and divided into five genera: Alphapapillomavirus, Betapapillomavirus, Gammapapillomavirus, Mupapillomavirus and Nupapillomavirus. With the application of PCR methods, hundreds of putative novel HPV types have been identified as PCR amplicons in mucosa and skin. However, at present there are no studies reporting a systematic search of the currently known L1 amplicons and their phylogenetic relationships. This survey revealed the existence of at least 202 different putative HPV types that are pending for full-genome characterization: five alphapapillomaviruses, 37 betapapillomaviruses, 159 gammapapillomaviruses and one mupapillomavirus. All potential viruses of the genera Alphapapillomavirus and Betapapillomavirus were grouped in the defined species, while 59 putative gammapapillomaviruses types were segregated in 21 unidentified putative species. These data highlight the need for progress in the identification of additional taxa of the family Papillomaviridae in order to elucidate the diversity, evolution and medical implications of these viruses.


Assuntos
Variação Genética , Papillomaviridae/classificação , Papillomaviridae/genética , Infecções por Papillomavirus/virologia , Filogenia , Alphapapillomavirus/classificação , Alphapapillomavirus/genética , Betapapillomavirus/classificação , Betapapillomavirus/genética , Proteínas do Capsídeo/genética , Primers do DNA , DNA Viral/análise , DNA Viral/genética , Gammapapillomavirus/classificação , Gammapapillomavirus/genética , Genoma Viral , Humanos , Mupapillomavirus/classificação , Mupapillomavirus/genética , Proteínas Oncogênicas Virais/genética , Infecções por Papillomavirus/diagnóstico , Infecções por Papillomavirus/epidemiologia , Reação em Cadeia da Polimerase , Análise de Sequência de DNA
18.
J Virol ; 86(21): 11936, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23043169

RESUMO

Nine novel human papillomavirus (HPV) types were isolated from healthy skin of individuals in rural Anyang, China. All of these isolates belong to the genus Gammapapillomavirus. These data will provide us with useful information for a better understanding of PV evolution and the relationship of PV with the host.


Assuntos
DNA Viral/química , DNA Viral/genética , Gammapapillomavirus/genética , Genoma Viral , China , Gammapapillomavirus/classificação , Gammapapillomavirus/isolamento & purificação , Genótipo , Humanos , Dados de Sequência Molecular , População Rural , Análise de Sequência de DNA , Pele/virologia
19.
J Pathol ; 227(1): 62-71, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22127961

RESUMO

In 20-40% of cervical intra-epithelial neoplasia (CIN) and in 4-8% of cervical carcinoma tissue specimens, multiple HPV genotypes have been detected. Whole tissue section (WTS) PCR does not determine how the individual types relate causally to complex and multiple CIN. Our objective was to determine whether laser capture micro-dissection (LCM) with HPV PCR genotyping (LCM-PCR) could accurately recover type-specific HPV DNA from epithelial cells in individual areas of CIN and normal epithelium, and whether one or more viruses are present in one lesion. For that, histologically selected samples of CIN and normal epithelium were isolated by LCM and analysed by the SPF(10) PCR/LiPA(25) (version 1) HPV genotyping system for 25 HPV genotypes. HPV genotypes detected in 756 areas of CIN (grade 1, 2 or 3) by LCM-PCR were compared with results obtained by WTS-PCR in 60 cases (74 biopsies). We showed that when a single HPV type is detected by WTS-PCR, that type was almost always (94%; 29/31) recovered by LCM-PCR from CIN. When multiple HPV types were present by WTS-PCR, their distribution within histological sections could be mapped by LCM-PCR. Association of a single HPV type with a discrete area of CIN was found for 93% (372/399) of LCM fragments analysed by PCR. We found colliding CIN lesions associated with separate HPV types and only 62% (61/99) of HPV types detected by WTS-PCR were found in CIN by LCM-PCR. Therefore, the LCM-PCR technique was found very accurate for high-resolution HPV genotyping and for assigning an individual HPV type to an area of CIN. At LCM level, in cervical biopsy sections with multiple HPV infections, the relation between HPV types and CIN lesions is often complex. Almost every HPV type found in CIN by LCM-PCR is associated with a biological separate independent CIN lesion-one virus, one lesion.


Assuntos
Gammapapillomavirus/genética , Infecções por Papillomavirus/virologia , Displasia do Colo do Útero/virologia , Neoplasias do Colo do Útero/virologia , DNA Viral/análise , Feminino , Gammapapillomavirus/classificação , Gammapapillomavirus/isolamento & purificação , Genótipo , Humanos , Microdissecção e Captura a Laser/métodos , Infecções por Papillomavirus/diagnóstico , Análise de Célula Única , Neoplasias do Colo do Útero/diagnóstico , Displasia do Colo do Útero/diagnóstico
20.
Epidemiol Prev ; 36(2): 88-94, 2012.
Artigo em Italiano | MEDLINE | ID: mdl-22706358

RESUMO

OBJECTIVE: causal relation between high risk Papilloma virus and cervical carcinoma is definitely ascertained. HPV test is suggested both as primary screening test and as triage test for selecting women who should undergo colposcopy examination. Evidence is clear for triage after ASC-US cytology. A recent study suggested the implementation after LSIL cytology in women 35 or older but the issue is controversial.We present a pilot study on the implementation of HPV test triage in the framework of cervical cancer screening. The study was conducted in respect to: participation, predictive value, and cost analysis, separately for ASC-US and LSIL cytology. DESIGN: HPV test was offered to women with Pap test result ASC-US or LSIL (35 and over), as an add-on to the "Prevenzione serena Screening Program" protocol. All samples were analyzed in the same specialized laboratory. HPV positive women were invited to colposcopy, negative will be invited at the scheduled interval for negative screening tests. SETTING AND PARTICIPANTS: Piedmont (NW Italy), LHAs of Novara and Verbano. In the 1-year study period 15,614 Pap tests were performed: 153 women were eligible for the triage. MAIN OUTCOME MEASURES: Participation at HPV test, HPV test results, costs. RESULTS: ninety two percent of women invited to HPV test actually participated: 66.9% of them were positive (52.8% after ASC-US and 82.8% after LSIL). Regarding colposcopy and histological results, CIN2+ were 9.4% of positive HPV tests in ASC-US group and 17.1% in LSIL group. Cost analysis showed limited differences between triage (offered after ASC-US and LSIL cytology) and traditional protocol. Triage is economically convenient when limited to women with ASC-US cytology. CONCLUSION: the pilot study demonstrated the feasibility of adding a triage phase with HPV test in cervical cancer screening protocol. Additional cost is balanced by the saving due to the reduction in the number of colposcopy exams: the process is economically convenient when limited to women with ASC-US cytology. When extended to LSIL cytology the marginal cost increases because of the higher prevalence of HPV positive results and total cost of triage with HPV test is close to the cost of immediate colposcopy referral.


Assuntos
Alphapapillomavirus/isolamento & purificação , Detecção Precoce de Câncer/estatística & dados numéricos , Gammapapillomavirus/isolamento & purificação , Teste de Papanicolaou/estatística & dados numéricos , Infecções por Papillomavirus/epidemiologia , Triagem/estatística & dados numéricos , Neoplasias do Colo do Útero/epidemiologia , Adulto , Colposcopia/economia , Colposcopia/estatística & dados numéricos , Análise Custo-Benefício , Custos e Análise de Custo , Sondas de DNA de HPV , Detecção Precoce de Câncer/economia , Feminino , Humanos , Itália/epidemiologia , Pessoa de Meia-Idade , Teste de Papanicolaou/economia , Infecções por Papillomavirus/diagnóstico , Infecções por Papillomavirus/economia , Infecções por Papillomavirus/patologia , Infecções por Papillomavirus/virologia , Projetos Piloto , Valor Preditivo dos Testes , Prevalência , Risco , Triagem/economia , Displasia do Colo do Útero/diagnóstico , Displasia do Colo do Útero/economia , Displasia do Colo do Útero/epidemiologia , Displasia do Colo do Útero/patologia , Displasia do Colo do Útero/virologia , Neoplasias do Colo do Útero/diagnóstico , Neoplasias do Colo do Útero/economia , Neoplasias do Colo do Útero/patologia , Neoplasias do Colo do Útero/virologia , Adulto Jovem
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