CONSEL: for assessing the confidence of phylogenetic tree selection.
Bioinformatics
; 17(12): 1246-7, 2001 Dec.
Article
em En
| MEDLINE
| ID: mdl-11751242
ABSTRACT
UNLABELLED CONSEL is a program to assess the confidence of the tree selection by giving the p-values for the trees. The main thrust of the program is to calculate the p-value of the Approximately Unbiased (AU) test using the multi-scale bootstrap technique. This p-value is less biased than the other conventional p-values such as the Bootstrap Probability (BP), the Kishino-Hasegawa (KH) test, the Shimodaira-Hasegawa (SH) test, and the Weighted Shimodaira-Hasegawa (WSH) test. CONSEL calculates all these p-values from the output of the phylogeny program packages such as Molphy, PAML, and PAUP*. Furthermore, CONSEL is applicable to a wide class of problems where the BPs are available. AVAILABILITY:
The programs are written in C language. The source code for Unix and the executable binary for DOS are found at http//www.ism.ac.jp/~shimo/ CONTACT shimo@ism.ac.jp
Buscar no Google
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Software
/
Funções Verossimilhança
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2001
Tipo de documento:
Article
País de afiliação:
Japão