PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.
Nucleic Acids Res
; 32(Web Server issue): W318-20, 2004 Jul 01.
Article
em En
| MEDLINE
| ID: mdl-15215402
ABSTRACT
An interactive web server is developed for predicting the potential binding sites and its target operons for a given regulatory protein in prokaryotic genomes. The program allows users to submit known or experimentally determined binding sites of a regulatory protein as ungapped multiple sequence alignments. It analyses the upstream regions of all genes in a user-selected prokaryote genome and returns the potential binding sites along with the downstream co-regulated genes (operons). The known binding sites of a regulatory protein can also be used to identify its orthologue binding sites in phylogeneticaly related genomes where the trans-acting regulator protein and cognate cis-acting DNA sequences could be conserved. PredictRegulon can be freely accessed from a link on our world wide web server http//www.cdfd.org.in/predictregulon/.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Óperon
/
Fatores de Transcrição
/
Software
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Sequências Reguladoras de Ácido Nucleico
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Genoma Bacteriano
Tipo de estudo:
Prognostic_studies
/
Risk_factors_studies
Idioma:
En
Revista:
Nucleic Acids Res
Ano de publicação:
2004
Tipo de documento:
Article
País de afiliação:
Índia