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STAMP: statistical analysis of taxonomic and functional profiles.
Parks, Donovan H; Tyson, Gene W; Hugenholtz, Philip; Beiko, Robert G.
Afiliação
  • Parks DH; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Advanced Water Management Centre, The University of Queensland, Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia and Dalhousie University, Halifax
  • Tyson GW; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Advanced Water Management Centre, The University of Queensland, Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia and Dalhousie University, Halifax
  • Hugenholtz P; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Advanced Water Management Centre, The University of Queensland, Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia and Dalhousie University, Halifax
  • Beiko RG; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Advanced Water Management Centre, The University of Queensland, Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia and Dalhousie University, Halifax
Bioinformatics ; 30(21): 3123-4, 2014 Nov 01.
Article em En | MEDLINE | ID: mdl-25061070
ABSTRACT
UNLABELLED STAMP is a graphical software package that provides statistical hypothesis tests and exploratory plots for analysing taxonomic and functional profiles. It supports tests for comparing pairs of samples or samples organized into two or more treatment groups. Effect sizes and confidence intervals are provided to allow critical assessment of the biological relevancy of test results. A user-friendly graphical interface permits easy exploration of statistical results and generation of publication-quality plots. AVAILABILITY AND IMPLEMENTATION STAMP is licensed under the GNU GPL. Python source code and binaries are available from our website at http//kiwi.cs.dal.ca/Software/STAMP.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bactérias / Software Limite: Humans Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2014 Tipo de documento: Article
Texto completo
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bactérias / Software Limite: Humans Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2014 Tipo de documento: Article