Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.

Tsyvina, Viachaslau; Campo, David S; Sims, Seth; Zelikovsky, Alex; Khudyakov, Yury; Skums, Pavel

Tsyvina, Viachaslau; Campo, David S; Sims, Seth; Zelikovsky, Alex; Khudyakov, Yury; Skums, Pavel.

Afiliação

Tsyvina V; Computer Science Department, Georgia State University, 25 Park Place NE, Atlanta, 30303, GA, USA. vtsyvina1@student.gsu.edu.
Campo DS; Molecular Epidemiology and Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Cliffton Road, Atlanta, 30333, GA, USA.
Sims S; Computer Science Department, Georgia State University, 25 Park Place NE, Atlanta, 30303, GA, USA.
Zelikovsky A; Molecular Epidemiology and Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Cliffton Road, Atlanta, 30333, GA, USA.
Khudyakov Y; Computer Science Department, Georgia State University, 25 Park Place NE, Atlanta, 30303, GA, USA.
Skums P; Molecular Epidemiology and Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Cliffton Road, Atlanta, 30333, GA, USA.

BMC Bioinformatics ; 19(Suppl 11): 360, 2018 Oct 22.

Article em En | MEDLINE | ID: mdl-30343669

Assuntos

Algoritmos; Variação Genética; Genoma; Filogenia; Sequência de Bases; Entropia; Sequenciamento de Nucleotídeos em Larga Escala; Humanos; Metagenômica; Reprodutibilidade dos Testes; Fatores de Tempo

Palavras-chave

Edit distance; Filtering; Hamming distance; K-mer; Similarity join; Similarity search

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Filogenia / Variação Genética / Algoritmos / Genoma Limite: Humans Idioma: En Revista: BMC Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Estados Unidos

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