STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions.

Katz, Kenneth S; Shutov, Oleg; Lapoint, Richard; Kimelman, Michael; Brister, J Rodney; O'Sullivan, Christopher

Katz, Kenneth S; Shutov, Oleg; Lapoint, Richard; Kimelman, Michael; Brister, J Rodney; O'Sullivan, Christopher.

Afiliação

Katz KS; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA. kskatz@nih.gov.
Shutov O; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Lapoint R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Kimelman M; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Brister JR; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
O'Sullivan C; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.

Genome Biol ; 22(1): 270, 2021 09 20.

Article em En | MEDLINE | ID: mdl-34544477

Assuntos

Sequenciamento de Nucleotídeos em Larga Escala/métodos; Software; Contaminação por DNA; Humanos; Metagenômica/métodos; SARS-CoV-2/genética

Palavras-chave

Metagenomics; MinHash

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Sequenciamento de Nucleotídeos em Larga Escala Limite: Humans Idioma: En Revista: Genome Biol Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos

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