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Why an integrated approach between search algorithms and chemical intuition is necessary?
Thimmakondu, Venkatesan S; Sinjari, Aland; Inostroza, Diego; Vairaprakash, Pothiappan; Thirumoorthy, Krishnan; Roy, Saikat; Anoop, Anakuthil; Tiznado, William.
Afiliação
  • Thimmakondu VS; Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA. vthimmakondusamy@sdsu.edu.
  • Sinjari A; School of Mathematics, Biological, Exercise & Physical Sciences, San Diego Miramar College, San Diego, CA, 92126-2910, USA.
  • Inostroza D; Computational and Theoretical Chemistry Group, Departamento de Ciencias Química, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile. wtiznado@unab.cl.
  • Vairaprakash P; Universidad Andres Bello, Programa de Doctorado en Fisicoquímica Molecular, Facultad de Ciencias Exactas, Santiago, Chile.
  • Thirumoorthy K; Department of Chemistry, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur 613 401, Tamil Nadu, India.
  • Roy S; Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore - 632 014, Tamil Nadu, India.
  • Anoop A; Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, West Bengal, India. anoop@chem.iitkgp.ac.in.
  • Tiznado W; Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, West Bengal, India. anoop@chem.iitkgp.ac.in.
Phys Chem Chem Phys ; 24(19): 11680-11686, 2022 May 18.
Article em En | MEDLINE | ID: mdl-35506427
ABSTRACT
Though search algorithms are appropriate tools for identifying low-energy isomers, fixing several constraints seems to be a fundamental prerequisite to successfully running any structural search program. This causes some potential setbacks as far as identifying all possible isomers, close to the lowest-energy isomer, for any elemental composition. The number of explored candidates, the choice of method, basis set, and availability of CPU time needed to analyze the various initial test structures become necessary restrictions in resolving the issues of structural isomerism reasonably. While one could arrive at new structures through chemical intuition, reproducing or achieving those exact same structures requires increasing the number of variables in any given program, which causes further constraints in exploring the potential energy surface in a reasonable amount of time. Thus, it is emphasized here that an integrated approach between search algorithms and chemical intuition is necessary by taking the C12O2Mg2 system as an example. Our initial search through the AUTOMATON program yielded 1450 different geometries. However, through chemical intuition, we found eighteen new geometries within 40.0 kcal mol-1 at the PBE0-D3/def2-TZVP level. These results indirectly emphasize that an integrated approach between search algorithms and chemical intuition is necessary to further our knowledge in chemical space for any given elemental composition.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Intuição Tipo de estudo: Prognostic_studies Idioma: En Revista: Phys Chem Chem Phys Assunto da revista: BIOFISICA / QUIMICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Intuição Tipo de estudo: Prognostic_studies Idioma: En Revista: Phys Chem Chem Phys Assunto da revista: BIOFISICA / QUIMICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos