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Transformation of PET raw data into images for event classification using convolutional neural networks.
Konieczka, Pawel; Raczynski, Lech; Wislicki, Wojciech; Fedoruk, Oleksandr; Klimaszewski, Konrad; Kopka, Przemyslaw; Krzemien, Wojciech; Shopa, Roman Y; Baran, Jakub; Coussat, Aurélien; Chug, Neha; Curceanu, Catalina; Czerwinski, Eryk; Dadgar, Meysam; Dulski, Kamil; Gajos, Aleksander; Hiesmayr, Beatrix C; Kacprzak, Krzysztof; Kaplon, Lukasz; Korcyl, Grzegorz; Kozik, Tomasz; Kumar, Deepak; Niedzwiecki, Szymon; Parzych, Szymon; Río, Elena Pérez Del; Sharma, Sushil; Shivani, Shivani; Skurzok, Magdalena; Stepien, Ewa Lucja; Tayefi, Faranak; Moskal, Pawel.
Afiliação
  • Konieczka P; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Raczynski L; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Wislicki W; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Fedoruk O; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Klimaszewski K; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Kopka P; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Krzemien W; High Energy Physics Division, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Shopa RY; Department of Complex Systems, National Centre for Nuclear Research, 05-400 Swierk, Poland.
  • Baran J; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Coussat A; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Chug N; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Curceanu C; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Czerwinski E; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Dadgar M; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Dulski K; INFN, National Laboratory of Frascati, 00044 Frascati, Italy.
  • Gajos A; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Hiesmayr BC; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Kacprzak K; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Kaplon L; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Korcyl G; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Kozik T; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Kumar D; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Niedzwiecki S; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Parzych S; University of Vienna, Faculty of Physics, 1090 Vienna, Austria.
  • Río EPD; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Sharma S; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Shivani S; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Skurzok M; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Stepien EL; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
  • Tayefi F; Center for Theranostics, Jagiellonian University, 31-348 Cracow, Poland.
  • Moskal P; Marian Smoluchowski Institute of Physics, Jagiellonian University, 31-348 Cracow, Poland.
Math Biosci Eng ; 20(8): 14938-14958, 2023 Jul 12.
Article em En | MEDLINE | ID: mdl-37679166
ABSTRACT
In positron emission tomography (PET) studies, convolutional neural networks (CNNs) may be applied directly to the reconstructed distribution of radioactive tracers injected into the patient's body, as a pattern recognition tool. Nonetheless, unprocessed PET coincidence data exist in tabular format. This paper develops the transformation of tabular data into n-dimensional matrices, as a preparation stage for classification based on CNNs. This method explicitly introduces a nonlinear transformation at the feature engineering stage and then uses principal component analysis to create the images. We apply the proposed methodology to the classification of simulated PET coincidence events originating from NEMA IEC and anthropomorphic XCAT phantom. Comparative studies of neural network architectures, including multilayer perceptron and convolutional networks, were conducted. The developed method increased the initial number of features from 6 to 209 and gave the best precision results (79.8) for all tested neural network architectures; it also showed the smallest decrease when changing the test data to another phantom.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Math Biosci Eng Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Polônia

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Math Biosci Eng Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Polônia