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1.
Mol Phylogenet Evol ; 180: 107675, 2023 03.
Artículo en Inglés | MEDLINE | ID: mdl-36528333

RESUMEN

Mountains play a key role in forming biodiversity by acting both as barriers to gene flow among populations and as corridors for the migration of populations adapted to the conditions prevailing at high elevations. The Anatolian and the Zagros Mountains are located in the Alpine-Himalayan belt. The formation of these mountains has influenced the distribution and isolation of the animal population since the late Cenozoic. Apathya is a genus of lacertid lizards distributed along these mountains with two species, i.e., Apathya cappadocica and Apathya yassujica. The taxonomy status of lineages within the genus is complicated. In this study, we tried to collect extensive samples from throughout the distribution range, especially within the Zagros Mountains. Also, we used five genetic markers, two mitochondrial (COI and Cyt b) and three nuclear (C-mos, NKTR, and MCIR), to resolve the phylogenetic relationships within the genus and explain several possible scenarios that shaped multiple genetic structures. The combination of results in the current study indicated eight well-support monophyletic lineages that separated to two main groups; group 1 including A. c. cappadocica, A. c. muhtari and A. c. wolteri, group 2 contains four regional clades Turkey, Urmia, Baneh and Ilam, and finally a single clade belonging to the species A. yassujica. In contrast to previous studies, Apathya cappadocica urmiana was divided into four clades and three clades were recognized within Iranian boundaries. The clades have dispersed from Anatolia to adjacent regions in the south of Anatolia and the western Zagros Mountains. According to the evidence generated in this study this clade is paraphyletic. Based on our assumption, orogeny activities and also climate fluctuations in Middle Miocene and Pleistocene have influenced to formation of lineages. In this study we revisit the taxonomy of the genus and demonstrate that the species diversity was substantially underestimated. Our findings suggest that each of the eight clades corresponding to subspecies and distinct geographic regions deserve to be promoted to species level.


Asunto(s)
Lagartos , Animales , Filogenia , Lagartos/genética , Irán , ADN Mitocondrial/genética , Evolución Biológica , Variación Genética
2.
Mol Phylogenet Evol ; 155: 106969, 2021 02.
Artículo en Inglés | MEDLINE | ID: mdl-33031930

RESUMEN

Plate tectonics constitute one of the main mechanisms of biological diversification on Earth, often being associated with cladogenetic events at different phylogenetic levels, as well as with exchange of faunas and floras across previously isolated biogeographic regions. North Africa and Arabia share a complex geological history that dates back to the break-up of the Arabian plate from the African plate ~30-25 Mya, followed by various geological events, such as the formation of the Red Sea or the connection between the African, Arabian and Eurasian plates. Species with Saharo-Arabian distributions have shown a close association between their evolutionary history and these geological events. In this study, we investigate the systematics, biogeography and evolution of the genus Tropiocolotes, a group of small ground-dwelling geckos, comprised by 12 species distributed from the Atlantic coast of North Africa to southwestern Iran. Species delimitation analyses uncovered the existence of high levels of undescribed diversity, with forms here considered at the species level including Tropiocolotes tripolitanus (Mauritania and southern Morocco), T. nattereri (southern Israel) and T. scorteccii (Yemen and Oman). Phylogenetic and biogeographic analyses recovered two main clades, an exclusively African clade and a Saharo-Arabian clade, that split ~25 Mya following the vicariant event mediated by the separation of the Arabian and African plates. The complex geological activity around the Red Sea is associated with the diversification within the Saharo-Arabian clade, including the colonization of North Africa from a second Tropiocolotes group. Results also provide new insights into the geographic distribution of Tropiocolotes nubicus, previously considered as exclusively associated to the Nile River valley, extending its known distribution further west, up to the Central Mountains of the Sahara. Accordingly, the Nile River seems to act as a major biogeographic barrier, separating Tropiocolotes nubicus and T. steudneri in their western and eastern margins, respectively.


Asunto(s)
Evolución Biológica , Lagartos/clasificación , Filogeografía , África del Norte , Animales , Teorema de Bayes , Haplotipos/genética , Funciones de Verosimilitud , Filogenia , Especificidad de la Especie , Factores de Tiempo
3.
Mol Phylogenet Evol ; 103: 199-214, 2016 10.
Artículo en Inglés | MEDLINE | ID: mdl-27404043

RESUMEN

Morphological and DNA data support that the East Mediterranean snake-eyed skink Ablepharus kitaibelii represents a species complex that includes four species A. kitaibelii, A. budaki, A. chernovi, and A. rueppellii, highlighting the need of its taxonomic reevaluation. Here, we used Bayesian and Maximum Likelihood methods to estimate the phylogenetic relationships of all members of the complex based on two mitochondrial (cyt b, 16S rRNA) and two nuclear markers (MC1R, and NKTR) and using Chalcides, Eumeces, and Eutropis as outgroups. The biogeographic history of the complex was also investigated through the application of several phylogeographic (BEAST) and biogeographic (BBM) analyses. Paleogeographic and paleoclimatic data were used to support the inferred phylogeographic patterns. The A. kitaibelli species complex exhibits high genetic diversity, revealing cases of hidden diversity and cases of non-monophyletic species such as A. kitaibelii and A. budaki. Our results indicate that A. pannonicus branches off first and a group that comprises specimens of A. kitaibelli and A. budaki from Kastelorizo Island group (southeast Greece) and southwest Turkey, respectively is differentiated from the rest A. kitaibelli and A. budaki populations and may represent a new species. The estimated divergence times place the origin of the complex in the Middle Miocene (∼16Mya) and the divergence of most currently recognized species in the Late Miocene. The inferred ancestral distribution suggests that the complex originated in Anatolia, supposing that several vicariance and dispersal events that are related with the formation of the Mid-Aegean Trench, the Anatolian Diagonal and the orogenesis of the mountain chains in southern and eastern Anatolia have led to current distribution pattern of A. kitaibelii species complex in the Balkans and Middle East.


Asunto(s)
Lagartos/clasificación , Animales , Peninsula Balcánica , Teorema de Bayes , Citocromos b/clasificación , Citocromos b/genética , Citocromos b/metabolismo , ADN/química , ADN/aislamiento & purificación , ADN/metabolismo , ADN Mitocondrial/clasificación , ADN Mitocondrial/genética , ADN Mitocondrial/metabolismo , Variación Genética , Grecia , Funciones de Verosimilitud , Lagartos/genética , Filogenia , Filogeografía , ARN Ribosómico 16S/clasificación , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/metabolismo , Receptor de Melanocortina Tipo 1/clasificación , Receptor de Melanocortina Tipo 1/genética , Receptor de Melanocortina Tipo 1/metabolismo , Receptores Inmunológicos/clasificación , Receptores Inmunológicos/genética , Receptores Inmunológicos/metabolismo , Alineación de Secuencia , Análisis de Secuencia de ADN , Turquía
4.
Mol Phylogenet Evol ; 102: 117-27, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27246100

RESUMEN

Darevskia rock lizards include both sexual and parthenogenetic species, mostly distributed in the heterogeneous and ecologically diverse Caucasus. The parthenogenetic species originated via directional hybridogenesis, with only some of the sexual species known to serve as parentals. However, it remains unclear when and where these events happened and how many parental lineages were involved. A multilocus phylogeographic analysis was performed on the parthenogens D. unisexualis, D. bendimahiensis and D. uzzeli, and their putative maternal species D. raddei. Results show the parthenogenetic species all have relatively recent origins, approximately 200-70kyr ago, and at least three hybridization events were involved in their formation. Ecological niche models identify the region where hybridization events leading to the formation of D. unisexualis took place, namely in the northeast of the current distribution. Models also suggest that the sexual D. raddei might have undergone a habitat shift between the Last Interglacial and the Last Glacial Maximum.


Asunto(s)
Lagartos/genética , Partenogénesis/genética , Animales , Área Bajo la Curva , Citocromos b/clasificación , Citocromos b/genética , ADN Mitocondrial/aislamiento & purificación , ADN Mitocondrial/metabolismo , Haplotipos , Historia Antigua , Hibridación Genética , Lagartos/clasificación , Lagartos/metabolismo , NADH Deshidrogenasa/clasificación , NADH Deshidrogenasa/genética , Filogenia , Filogeografía/historia , Curva ROC
5.
BMC Ecol Evol ; 24(1): 93, 2024 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-38969976

RESUMEN

The Persian fallow deer or Mesopotamian fallow Deer (Dama mesopotamica, Brook 1875), a species of significant ecological importance, had faced the threat of extinction in Iran. One conservation strategy involved the translocation of Persian deer to enclosed areas across Iran, where they were afforded protection from external threats and provided with essential care by human caretakers. While human caretakers diligently attend to their needs and mitigate external threats, climate variables may now become critical factors affecting population dynamics in enclosed areas. This study aims to assess the similarity in climate niches between the original area (Dez and Karkheh) of the Persian deer species and 11 newly enclosed areas. To achieve this, we employed climate data and ecological niche modeling (ENM) techniques to assess the variations in climate among 12 areas. We utilized the environmental equivalency test to determine whether the environmental spaces of area pairs exhibit significant differences and whether these spaces are interchangeable. Extrapolation analyses were also constructed in the next steps to explore climatic conditions in original fallow deer habitats that are non-analogous to those in other parts of Iran. Our results reveal significant disparities in climate conditions between the original and all translocated areas. Based on observations of population growth in specific enclosed areas where translocated deer populations have thrived, we hypothesize that the species may demonstrate a non-equilibrium distribution in Iran. Consequently, these new areas could potentially be regarded as part of the species' potential climate niche. Extrapolation analysis showed that for a significant portion of Iran, extrapolation predictions are highly uncertain and potentially unreliable for the translocation of Persian fallow deer. However, the primary objective of translocation efforts remains the establishment of self-sustaining populations of Persian deer capable of thriving in natural areas beyond enclosed areas, thus ensuring their long-term survival and contributing to preservation efforts. Evaluating the success of newly translocated species requires additional time, with varying levels of success observed. In cases where the growth rate of the species in certain enclosed areas falls below expectations, it is prudent to consider climate variables that may contribute to population declines. Furthermore, for future translocations, we recommend selecting areas with climate similarities to regions where the species has demonstrated growth rates.


Asunto(s)
Clima , Ciervos , Ecosistema , Animales , Irán , Ciervos/fisiología , Conservación de los Recursos Naturales , Dinámica Poblacional
6.
Ecol Evol ; 14(6): e11551, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38863719

RESUMEN

Body mass plays a crucial role in determining the mass-specific energy expenditure during terrestrial locomotion across diverse animal taxa, affecting locomotion patterns. The energy landscape concept offers a framework to explore the relationship between landscape characteristics and energy expenditure, enhancing our understanding of animal movement. Although the energy landscape approach solely considers the topographic obstacles faced by animals, its suitability compared to previous methods for constructing resistance maps and delineating corridors has not been comprehensively examined. In this study, we utilized the enerscape R package to generate resistance maps in kilocalories (kcal) by incorporating digital elevation models (DEMs) and body size data (kg). We assigned body sizes ranging from 0.5 to 100 kg to encompass a wide range of small and large mammals in Iran, adjusting maximum dispersal distances accordingly from 50 to 200 km. By analyzing these scenarios, we produced four resistance maps for each body size. Next, we identified potential corridors between terrestrial protected areas in Iran using the Linkage Mapper toolkit and examined barriers and pinch-points along these paths. Our study revealed significant findings regarding the shared corridors between small and large mammals in Iran's landscape. Despite their differing body sizes and energy requirements, many corridors were found to be utilized by both small and large mammal species. For example, we identified 206 corridors for mammals weighing 500 g, which were also recognized as the least-cost paths for 100 kg mammals. Thus, embracing a comprehensive method in resistance map creation, one that incorporates species-specific traits and human infrastructure becomes imperative for accurately identifying least-cost paths and consequently pinpointing pinch points and barriers.

7.
Heliyon ; 10(1): e23523, 2024 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-38173494

RESUMEN

Earthworms play a crucial role in the invertebrate community of soil by contributing to the belowground biomass and biogeochemical cycle. Environmental stresses, such as human activities and land use changes, have been found to negatively affect their abundance and diversity. To investigate the impact of agricultural land use and pastures on earthworms' genetic diversity in the Northern Zagros Mountains, we used COI molecular marker and DNA barcoding approaches. We collected earthworm specimens from four farmland sites and six pastures and assessed the abundance and species composition of earthworm communities across the two land uses using quadrat sampling. Using the barcoding method, we identified 13 molecular operational taxonomic units (MOTUs) among the captured earthworms. Our results showed that the number of total MOTUs, density, and earthworm communities differed significantly between the two land uses. We also found that pastures had more abundant earthworms, while farmlands had greater diversity. The diversity of OTUs in the Lumbricidae family was dominant in the agricultural system. Overall, the population of invasive earthworm species in cultivation systems is influenced by chemical inputs and organic materials from plant residues, cover crops, manure, or organic fertilizers. Given the rapid rate of land use change worldwide, especially in Iran, it is crucial to understand the impact of disturbances on earthworms.

8.
Sci Rep ; 14(1): 15624, 2024 Jul 07.
Artículo en Inglés | MEDLINE | ID: mdl-38972910

RESUMEN

This study examines the impact of fire incidents on wildlife and habitats in the western oak forests of Iran (Zagros region). These forests are globally recognized for their exceptional biodiversity but are frequently threatened by wildfires. To achieve this, the study uses the space-time scan statistics permutation (STSSP) model to identify areas with a higher frequency of fires. The study also analyzes the effects of fires on the Zagros forests from 2000 to 2021 using remote-sensing MODIS data. Also, to understand the elements at risk of fire, burned areas were assessed based on the richness of vertebrate species, determined by the distribution of 88 vertebrate species. The results show that the annual fire rate in the Zagros forests is 76.2 (fire occurrences per year), calculated using the Poisson distribution. Findings show the highest fire rates are found in the northwest and a part of the south of the Zagros. The northwest of the Zagros also has the largest number of single fires and clusters, indicating a wide spatial distribution of fire in these regions. On the other side, it was unexpectedly found that these regions have the richest number of species and higher habitat value. The results demonstrate a significant correlation between the value of the habitat and the extent of burned areas (p < 0.05). The study also reveals that the greatest impact of fires is on small vertebrates. The overlap of frequent fire spots with the richest regions of Zagros oak forests in terms of vertebrate diversity emphasizes the need for strategic forest risk reduction planning, especially in these priority zones.


Asunto(s)
Biodiversidad , Conservación de los Recursos Naturales , Ecosistema , Bosques , Quercus , Vertebrados , Incendios Forestales , Irán , Animales , Conservación de los Recursos Naturales/métodos , Incendios/prevención & control
9.
Mol Phylogenet Evol ; 66(3): 992-1001, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23261710

RESUMEN

Apathya is a lacertid genus occurring mainly in south-east Turkey and its adjacent regions (part of Iran and Iraq). So far two morphological species have been attributed to the genus; A. cappadocica (with five subspecies, A. c.cappadocica, A. c.muhtari, A. c.schmidtlerorum, A. c. urmiana and A. c.wolteri) and A.yassujica. The first species occupies most of the genus' distribution range, while A. yassujica is endemic of the Zagros Mountains. Here, we explored Apathya's taxonomy and investigated the evolutionary history of the species by employing phylogenetic and phylogeographic approaches and using both mitochondrial (mtDNA) and nuclear markers. The phylogenetic relationships and the genetic distances retrieved, revealed that Apathya is a highly variable genus, which parallels its high morphological variation. Such levels of morphological and genetic differentiation often exceed those between species of other Lacertini genera that are already treated as full species, suggesting the necessity for a taxonomic revision of Apathya. The phylogeographical scenario emerging from the genetic data suggests that the present distribution of the genus was determined by a combination of dispersal and vicariance events between Anatolia and Southwest Asia dating back to the Miocene and continuing up to the Pleistocene. Key geological events for the understanding of the phylogeography of the genus are the movement of the Arabian plate that led to the configuration of Middle East (orogenesis of the mountain ranges of Turkey and Iran) and the formation of Anatolian Diagonal.


Asunto(s)
Distribución Animal , Variación Genética , Fenómenos Geológicos , Lagartos/clasificación , Lagartos/genética , Filogenia , Animales , Secuencia de Bases , Teorema de Bayes , ADN Mitocondrial/genética , Irán , Funciones de Verosimilitud , Región Mediterránea , Modelos Genéticos , Datos de Secuencia Molecular , Filogeografía , Análisis de Secuencia de ADN
10.
Zootaxa ; 3716: 22-38, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-26106762

RESUMEN

The genus Tropiocolotes comprises small, naked toed, ground dwelling and nocturnal desert geckos, ranging from Morocco and Mauritania in northern Africa to south and central Arabia as well as coastal Iran. Herein, we describe a new species of the genus Tropiocolotes from western Iran based on five specimens from Nayband region. This new taxon is described with a statistical approach based on 34 meristic, metric and qualitative morphological characters of more than 300 individuals of related species.


Asunto(s)
Lagartos/anatomía & histología , Lagartos/clasificación , Distribución Animal , Animales , Irán , Lagartos/fisiología , Especificidad de la Especie
11.
Biol Open ; 12(12)2023 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-38014991

RESUMEN

Oligochaetes are the most abundant benthic taxa in aquatic ecosystems that play an important role in food webs. The present study aims to assess the diversity and origin of Eiseniella tetraedra as a non-native species in the Lar National Park of Iran and also its response to current and future climate change. We obtained the specimen from rivers and sequenced the mitochondrial gene Cytochrome Oxidase subunit I (COI) and combined them with 117 sequences from the Jajroud and Karaj rivers in Iran and native regions from GenBank (NCBI). We also ran Species Distribution Modelings (SDMs) using an ensemble model approach that was estimated according to two shared socio-economic pathways (SSPs): 126 and 585 of the MRI-ESM2 based on CMIP6. According to the results, all the samples examined in the current study originated from Spanish rivers, and no unique haplotype was found in the Lar National Park. Moreover, the results also show high haplotype diversity that can positively affect the success of this non-native species in different freshwater. Also, the results of SDMs depict that climate change would remarkably affect the distribution of E. tetraedra and it verifies the invasion power of E. tetraedra in Iran's freshwater ecosystems over time.


Asunto(s)
Cambio Climático , Oligoquetos , Animales , Ecosistema , Irán , Agua Dulce
12.
Zootaxa ; 5047(1): 17-32, 2021 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-34811012

RESUMEN

Acanthodactylus boskianus is a widespread species in Northern Africa and Western Asia. In this study, we used morphological and genetic approaches to study populations of A. boskianus from the Zagros Mountains in western Iran, the easternmost limit of the species distribution. Our morphological and genetic data indicate that populations of A. boskianus in Iran are distinct from other populations of A. boskianus. Therefore, we describe the Iranian populations as Acanthodactylus zagrosicus sp. nov. The new species is the third endemic species of Acanthodactylus in Iran and the ninth Acanthodactylus species distributed in Iran overall. According to our surveys, this species is distributed widely in the Zagros Mountains including Kermanshah, Lorestan, Ilam, and Khuzestan Provinces.


Asunto(s)
Lagartos , Animales , Irán , Lagartos/genética
13.
Ecol Evol ; 11(11): 6927-6940, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-34141266

RESUMEN

Green lizards of the genus Lacerta have served as excellent models for studying the impact of Pleistocene climatic oscillations on genetic structures. The Caspian green lizard, Lacerta strigata, occupies various habitats across the Caucasus and the South Caspian Sea, with the Hyrcanian Forests and north of the Alborz Mountains forming the core of the range. This study aimed to re-examine the phylogenetic relationships of L. strigata with other congeneric members and to assess the genetic structure and historical demography of the species. Furthermore, Species Distribution Models (SDMs) were performed to infer the species' potential habitat suitability and were then projected on climate scenarios reflecting current and past (6 ky and 21 ky before present) conditions. A total of 39 individuals collected from most of the distribution range, together with additional lacertid species sequences from the GenBank database, were examined using mtDNA (Cyt b and 12S ribosomal RNA) and nuclear (C-mos and ß-fibrinogen) sequence data. Based on the phylogenetic analyses, L. strigata was found to be a sister taxon to all other members of the genus. The species included two main clades (regional western and eastern) that diverged in a period between the Early and Middle Pleistocene. Based on the BBM and S-Diva analyses, both dispersal and vicariance events explained the phylogeographic structure of the species in the Hyrcanian Forests. The historical demographic analyses using Bayesian skyline plots showed a mild increase in the effective population size from about 120 Kya for the western regional clade. According to phylogeographic structures and SDMs evidence, as in other species within the region, it appears that the south of the Caspian Sea (Hyrcanian Forests), and the Alborz Mountains acted as multiple refugia during cold periods and promoted expansion outwards amid the warm periods. Overall, the results provided evidence that the genetic structure of the species has been influenced by the Pleistocene climatic fluctuations.

14.
Zootaxa ; 4768(4): zootaxa.4768.4.7, 2020 May 05.
Artículo en Inglés | MEDLINE | ID: mdl-33055640

RESUMEN

We describe a new species of Lacertid lizard of the genus Eremias from the border of the northeastern side of Markazi Province to the western side of Tehran Province in Iran. Eremias fahimii sp. nov. is part of the Eremias subgenus (or morphotype) by virtue of lacking lateral fringes on the fourth toe, having movable eyelids, a lower nasal shield that rests on two supralabials, and ventral plates arranged in oblique longitudinal rows. It can be further differentiated from previously described species assigned to this morphotype by the absence of distinctly keeled upper caudal scales, gular scales that do not extend to the second inframaxiallary scales, shape and relative size of frontoparietals, parietal and parietals, scale counts and absence of lateral color ocellus. In addition, the molecular phylogeny of the most common Iranian racerunners including Eremias fahimii sp. nov. was studied using mitochondrial Cytochrome b (Cyt b) and 12S ribosomal RNA (12S) genes. Our results support the validation of the new species which depicts a sister group relationship to E. persica. Of the 20 species of Eremias known from Iran, E. fahimii sp. nov. is the seventh endemic species along with E. andersoni, E. isfahanica, E. lalezharica, E. kavirensis, E. montana and E. papenfussi. Despite the fact that up to now E. fahimii sp. nov. is only known from the type locality, it is highly probable that it also occurs in Tehran, Alborz, Qom, Qazvin and Zanjan Provinces due to topological characteristics and habitat similarities in these areas.


Asunto(s)
Lagartos , Estructuras Animales , Animales , Tamaño Corporal , Irán
15.
Sci Rep ; 10(1): 18167, 2020 10 23.
Artículo en Inglés | MEDLINE | ID: mdl-33097758

RESUMEN

Spatial gradients of species richness can be shaped by the interplay between historical and ecological factors. They might interact in particularly complex ways in heterogeneous mountainous landscapes with strong climatic and geological contrasts. We mapped the distribution of 171 lizard species to investigate species richness patterns for all species (171), diurnal species (101), and nocturnal species (70) separately. We related species richness with the historical (past climate change, mountain uplifting) and ecological variables (climate, topography and vegetation). We found that assemblages in the Western Zagros Mountains, north eastern and north western parts of Central Iranian Plateau have the highest number of lizard species. Among the investigated variables, annual mean temperature explained the largest variance for all species (10%) and nocturnal species (31%). For diurnal species, temperature change velocity shows strongest explained variance in observed richness pattern (26%). Together, our results reveal that areas with annual temperature of 15-20 °C, which receive 400-600 mm precipitation and experienced moderate level of climate change since the Last Glacial Maximum (LGM) have highest number of species. Documented patterns of our study provide a baseline for understanding the potential effect of ongoing climate change on lizard diversity in Iran.


Asunto(s)
Distribución Animal , Biodiversidad , Lagartos/fisiología , Animales , Cambio Climático , Geografía , Irán , Temperatura
16.
Zoology (Jena) ; 134: 8-15, 2019 06.
Artículo en Inglés | MEDLINE | ID: mdl-31146909

RESUMEN

Pristurus rupestris is a member of Semaphore geckos with a wide distribution range. Recently, 14 candidate species of P. rupestris rupestris have been identified in the Hajar Mountains (Arabia), yet the knowledge on the Iranian counterparts is limited. The present study elucidates the phylogenetic position of the Iranian P. rupestris and investigates the hypothesis on its historical colonization from Oman to Iran and the associated islands. Therefore, 20 Iranian specimens along with 115 individuals from Oman were examined using two mitochondrial genes including the Cytochrome b and the 12S ribosomal RNA. The molecular phylogenetic analyses revealed that the individuals collected from Iran are well nested within the candidate Species 3 of P. r. rupestris, demonstrating a single population with high gene flow. Additionally, the molecular analyses showed that the genetic diversity within the Iranian Blanford's Semaphore geckos is low and that the candidate Species 3 experienced a recent expansion approximately 17 thousand years ago (Kya). The historical demographic analyses (BSP) showed a mild increase in the effective population size between 15-20 Kya. These time estimations coincide with the Last Glacial Maximum, when the Persian Gulf was almost dry, reinforcing the hypothesis that the species might have colonized southern Iran from Oman through the Persian Gulf. In addition, we propose P. r. iranicus to be synonymized with P. r. rupestris.


Asunto(s)
Lagartos/fisiología , Filogenia , Animales , Haplotipos , Irán , Lagartos/clasificación , Lagartos/genética , Omán
17.
Nat Commun ; 10(1): 4077, 2019 09 09.
Artículo en Inglés | MEDLINE | ID: mdl-31501432

RESUMEN

Climatic conditions changing over time and space shape the evolution of organisms at multiple levels, including temperate lizards in the family Lacertidae. Here we reconstruct a dated phylogenetic tree of 262 lacertid species based on a supermatrix relying on novel phylogenomic datasets and fossil calibrations. Diversification of lacertids was accompanied by an increasing disparity among occupied bioclimatic niches, especially in the last 10 Ma, during a period of progressive global cooling. Temperate species also underwent a genome-wide slowdown in molecular substitution rates compared to tropical and desert-adapted lacertids. Evaporative water loss and preferred temperature are correlated with bioclimatic parameters, indicating physiological adaptations to climate. Tropical, but also some populations of cool-adapted species experience maximum temperatures close to their preferred temperatures. We hypothesize these species-specific physiological preferences may constitute a handicap to prevail under rapid global warming, and contribute to explaining local lizard extinctions in cool and humid climates.


Asunto(s)
Ambiente , Variación Genética , Genoma , Lagartos/genética , Lagartos/fisiología , Temperatura , Animales , Regulación de la Temperatura Corporal/fisiología , Clima , Evolución Molecular , Filogenia
18.
Zootaxa ; 4441(1): 46-58, 2018 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-30314019

RESUMEN

The meadow lizard Darevskia praticola (Eversmann, 1834) displays a wide distribution range from the Western Balkans and Caucasus to the Hyrcanian forest in Iran. Based on previous studies, four subspecies have been described (D. p. praticola, D. p. pontica, D. p. hyrcanica and D. p. loriensis), but molecular evidence suggests two main phylogenetic lineages, Balkan and Caucasus. In this study we incorporated geographic records and analysed new samples from Alborz Mountains (Gilan Province, Iran), exploring their phylogenetic affinities using two mitochondrial markers (Cyt b and ND4). For the first time, Iranian samples are included in a molecular phylogeny. Our results meet the previous suggestions regarding the presence of a nuclear mitochondrial DNA fragment (numt) in Cyt b, causing misleading phylogenetic inferences since it renders the species paraphyletic. In contrast, the ND4 genealogy groups the species into a monophyletic clade, as expected. Samples attributed to D. p. hyrcanica (Azerbaijan and Iran) and D. p. loriensis (Armenia) are settled in a single clade with minute genetic distance, suggesting synonymisation.


Asunto(s)
Lagartos , Filogenia , Animales , Armenia , Azerbaiyán , Peninsula Balcánica , ADN Mitocondrial , Pradera , Irán , Análisis de Secuencia de ADN
19.
Zootaxa ; 3835(1): 33-58, 2014 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-25081434

RESUMEN

A molecular phylogeny of the sphaerodactylid geckos of the genus Pristurus is inferred based on an alignment of 1845 base pairs (bp) of concatenated mitochondrial (12S) and nuclear (acm4, cmos, rag1 and rag2) genes for 80 individuals, representing 18 of the 23-26 species, and the three subspecies of P. rupestris. The results indicate that P. rupestris is polyphyletic and includes two highly divergent clades: the eastern clade, found in coastal Iran and throughout the Hajar Mountain range in northern Oman and eastern UAE; and the western clade, distributed from central coastal Oman, through Yemen, Saudi Arabia and north to southern Jordan. Inferred haplotype networks for the four nuclear genes show that the eastern and western clades of "P. rupestris" are highly differentiated and do not share any alleles. Moreover, although the two clades are differentiated by a morphological multivariate analysis, no one character or set of characters was found to be diagnostic. Based on the molecular analysis of specimens from the type locality of P. rupestris rupestris, the name P. rupestris is applied to the eastern clade. The name that should apply to the western clade cannot be clarified until morphological and genetic data for "P. rupestris" is available from the vicinity of Bosaso, Somalia, and therefore we refer to it as Pristurus sp. 1. The phylogenetic tree of Pristurus supports the hypothesis that P. celerrimus is sister to all the other species in the analyses and that the Socotra Archipelago was independently colonized a minimum of two times.


Asunto(s)
Lagartos/clasificación , Filogenia , Distribución Animal , Animales , ADN Mitocondrial/genética , Lagartos/genética , Medio Oriente , Somalia
20.
PLoS One ; 8(12): e83890, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24349557

RESUMEN

We used pitfall trapping to investigate the effects of elevation, plant density and soil structure on species diversity and the impact of these habitat factors on lizard habitat selectivity in the Qom Province in the Central Plateau of Iran. From a total of 12 1-ha plots, we captured 363 individuals of 15 species of lizards (six species of Lacertidae, five species of Agamidae, two species of Gekkonidae, one species of Varanidae and one species of Scincidae). A generalized linear model (GLM) determined that elevation was the most important factor impacting species diversity. The highest species diversity was at the intermediate elevation (1289 m). Abundance of 6 out of 15 species showed strong relationships with some habitat factors. These relationships were demonstrated by habitat selectivity index (Ivlev's index). Our result supports other surveys that showed that elevation plays an important role in determining lizard species diversity.


Asunto(s)
Biodiversidad , Lagartos/clasificación , Lagartos/fisiología , Animales , Irán
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